Wall clock time and date at job start Tue Mar 31 2020 00:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33658 * 125.80107 * 2 1 4 4 C 1.34219 * 110.90795 * 180.28779 * 3 2 1 5 5 C 1.34183 * 109.12397 * 359.72204 * 4 3 2 6 6 C 1.36415 * 125.80613 * 179.80863 * 2 1 3 7 7 C 1.47380 * 127.18807 * 0.02562 * 6 2 1 8 8 O 1.21616 * 120.00136 * 359.97438 * 7 6 2 9 9 N 1.34772 * 120.00041 * 179.71167 * 7 6 2 10 10 C 1.46507 * 119.99978 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46816 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46816 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99734 * 269.99748 * 12 11 10 14 14 H 1.07997 * 119.99910 * 144.92113 * 13 12 11 15 15 C 1.38816 * 120.00071 * 324.92146 * 13 12 11 16 16 N 1.31618 * 119.99950 * 337.94951 * 15 13 12 17 17 Si 1.86794 * 120.00005 * 157.94838 * 15 13 12 18 18 H 1.48504 * 109.47193 * 59.99833 * 17 15 13 19 19 H 1.48504 * 109.47190 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47591 * 300.00139 * 17 15 13 21 21 C 1.46496 * 120.00027 * 89.99666 * 12 11 10 22 22 C 1.53001 * 117.49607 * 183.23786 * 21 12 11 23 23 C 1.53004 * 117.49775 * 114.58036 * 21 12 11 24 24 H 1.08999 * 109.47451 * 270.19414 * 1 2 3 25 25 H 1.09002 * 109.46968 * 30.19255 * 1 2 3 26 26 H 1.09003 * 109.47367 * 150.18967 * 1 2 3 27 27 H 1.08000 * 125.43867 * 179.68825 * 4 3 2 28 28 H 1.07998 * 127.02519 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00246 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46708 * 299.99296 * 10 9 7 31 31 H 1.08996 * 109.47276 * 59.99760 * 10 9 7 32 32 H 1.09000 * 109.47024 * 299.99246 * 11 10 9 33 33 H 1.08996 * 109.47276 * 59.99903 * 11 10 9 34 34 H 0.97004 * 119.99808 * 175.77065 * 16 15 13 35 35 H 1.08991 * 115.55218 * 328.90804 * 21 12 11 36 36 H 1.08998 * 117.50232 * 0.02562 * 22 21 12 37 37 H 1.08998 * 117.49658 * 145.02581 * 22 21 12 38 38 H 1.09001 * 117.49989 * 214.98030 * 23 21 12 39 39 H 1.08999 * 117.49840 * 359.97144 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0063 5 6 3.6849 -0.5991 -0.0045 6 6 2.3050 -1.1063 0.0037 7 6 1.8740 -2.5157 0.0079 8 8 0.6890 -2.7892 0.0088 9 7 2.7930 -3.5014 0.0054 10 6 2.3645 -4.9024 0.0090 11 6 3.5948 -5.8120 0.0044 12 7 3.1663 -7.2130 0.0086 13 6 2.9718 -7.8659 1.1965 14 1 2.1854 -8.6006 1.2864 15 6 3.7855 -7.5834 2.2851 16 7 4.9740 -7.0500 2.0975 17 14 3.1936 -7.9602 4.0163 18 1 2.9204 -9.4146 4.1404 19 1 4.2408 -7.5686 4.9937 20 1 1.9493 -7.1977 4.2911 21 6 2.9459 -7.9154 -1.2579 22 6 2.4264 -9.3528 -1.1875 23 6 3.8782 -9.0822 -1.5902 24 1 -0.3634 0.0035 1.0276 25 1 -0.3633 0.8883 -0.5168 26 1 -0.3634 -0.8917 -0.5109 27 1 4.4172 1.4285 -0.0124 28 1 4.5927 -1.1840 -0.0087 29 1 3.7382 -3.2834 0.0004 30 1 1.7707 -5.0984 0.9017 31 1 1.7632 -5.1008 -0.8782 32 1 4.1883 -5.6159 -0.8886 33 1 4.1964 -5.6138 0.8914 34 1 5.5174 -6.7959 2.8598 35 1 2.6008 -7.2955 -2.0854 36 1 2.2482 -9.7757 -0.1988 37 1 1.7398 -9.6786 -1.9689 38 1 4.1461 -9.2301 -2.6364 39 1 4.6558 -9.3268 -0.8667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753151853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:43 Heat of formation + Delta-G solvation = 22.627998 kcal Electronic energy + Delta-G solvation = -21297.193055 eV Core-core repulsion = 18015.130026 eV Total energy + Delta-G solvation = -3282.063029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58526 -38.99276 -37.10351 -34.75513 -33.31033 -32.91979 -31.88458 -30.75203 -27.99739 -26.66372 -24.53377 -23.11187 -21.82945 -21.33466 -20.70442 -19.88834 -19.49961 -17.85744 -16.37870 -16.32134 -15.66172 -15.49375 -15.33663 -14.73626 -14.57043 -14.18897 -13.86781 -13.29476 -13.09213 -13.00567 -12.87107 -12.70355 -12.56027 -11.94013 -11.76628 -11.56721 -11.04231 -10.76527 -10.72457 -10.33122 -10.13308 -9.88717 -9.82818 -9.65982 -9.62941 -9.29927 -8.70729 -8.53151 -8.39906 -6.65674 -5.86272 -3.46671 1.41081 2.03015 2.75869 3.33860 3.39948 3.43779 3.62075 3.65364 4.42092 4.47163 4.84237 4.89158 4.93386 5.21354 5.27429 5.31085 5.45588 5.49434 5.63150 5.80320 5.89184 6.03508 6.10723 6.11478 6.19591 6.23752 6.30509 6.48732 6.52895 6.61041 6.88166 6.96664 6.98268 7.06925 7.20248 7.52570 7.74979 7.96585 8.39940 8.61081 9.07285 9.70152 10.24970 11.10060 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.004281 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.687319 B = 6538.504886 C = 7112.302057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.069 3.931 3 O -0.180 6.180 4 C -0.045 4.045 5 C -0.186 4.186 6 C -0.239 4.239 7 C 0.582 3.418 8 O -0.550 6.550 9 N -0.711 5.711 10 C 0.100 3.900 11 C 0.136 3.864 12 N -0.547 5.547 13 C -0.259 4.259 14 H 0.068 0.932 15 C 0.012 3.988 16 N -0.884 5.884 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.207 0.793 28 H 0.158 0.842 29 H 0.397 0.603 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 13.477 -5.377 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.017 3.983 3 O -0.076 6.076 4 C -0.110 4.110 5 C -0.205 4.205 6 C -0.244 4.244 7 C 0.369 3.631 8 O -0.430 6.430 9 N -0.361 5.361 10 C -0.025 4.025 11 C 0.009 3.991 12 N -0.264 5.264 13 C -0.388 4.388 14 H 0.086 0.914 15 C -0.188 4.188 16 N -0.526 5.526 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.207 1.207 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.223 0.777 28 H 0.176 0.824 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.697 13.527 -5.229 14.751 hybrid contribution 0.627 -0.281 0.944 1.167 sum -2.070 13.246 -4.285 14.075 Atomic orbital electron populations 1.20589 0.83831 1.04907 1.04334 1.22803 0.94092 0.83111 0.98332 1.83744 1.17158 1.35078 1.71646 1.23810 0.83517 0.96381 1.07340 1.22940 0.96897 0.94549 1.06106 1.21335 0.93230 0.94323 1.15480 1.17211 0.85719 0.83622 0.76552 1.90729 1.16668 1.84109 1.51528 1.45883 1.09369 1.07049 1.73791 1.22328 1.00787 0.77945 1.01406 1.21105 0.92760 0.82588 1.02675 1.43214 1.77477 1.05651 1.00024 1.19063 1.10362 1.21800 0.87623 0.91442 1.25115 0.93870 1.00637 0.99218 1.70027 1.07718 1.44831 1.30067 0.86458 0.78152 0.78522 0.84276 1.20573 1.21549 1.20730 1.21235 1.00470 0.87019 0.90274 1.23039 0.96566 1.01558 1.02138 1.23358 0.93703 1.09434 0.99587 0.89469 0.90680 0.87210 0.77691 0.82437 0.76911 0.91499 0.93078 0.95021 0.87665 0.93457 0.89468 0.88418 0.90688 0.91185 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 9.89 36.00 0.36 -0.54 16 2 C 0.07 0.92 7.37 -34.97 -0.26 0.66 16 3 O -0.18 -2.14 10.52 7.63 0.08 -2.06 16 4 C -0.04 -0.45 12.03 29.30 0.35 -0.09 16 5 C -0.19 -2.17 10.60 -37.45 -0.40 -2.56 16 6 C -0.24 -3.53 6.31 -103.28 -0.65 -4.19 16 7 C 0.58 10.35 7.81 -12.54 -0.10 10.25 16 8 O -0.55 -11.25 14.84 5.26 0.08 -11.17 16 9 N -0.71 -12.35 5.55 -61.39 -0.34 -12.69 16 10 C 0.10 2.04 6.00 -4.04 -0.02 2.02 16 11 C 0.14 2.99 5.45 -4.04 -0.02 2.97 16 12 N -0.55 -13.13 2.78 -165.66 -0.46 -13.59 16 13 C -0.26 -6.82 8.63 -15.06 -0.13 -6.95 16 14 H 0.07 1.79 6.55 -52.49 -0.34 1.44 16 15 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 16 N -0.88 -24.25 11.33 55.49 0.63 -23.62 16 17 Si 0.90 21.24 29.61 -169.99 -5.03 16.21 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 22 C -0.19 -3.82 9.80 -26.69 -0.26 -4.08 16 23 C -0.22 -4.42 10.36 -26.69 -0.28 -4.70 16 24 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.11 1.41 6.48 -51.93 -0.34 1.07 16 27 H 0.21 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.16 1.51 7.74 -52.49 -0.41 1.11 16 29 H 0.40 5.94 7.64 -40.82 -0.31 5.63 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.11 2.59 5.35 -51.93 -0.28 2.31 16 34 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 331.46 15.07 4.99 4.99 Total: -1.00 -30.70 331.46 -7.36 -38.06 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.37 Total: 8.79 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.94 Total: -4.92 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.17 Total: -49.90 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.16 Total: -13.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.70 -7.36 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753151853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.686 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds