Wall clock time and date at job start Tue Mar 31 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33658 * 125.80107 * 2 1 4 4 C 1.34219 * 110.90795 * 180.28779 * 3 2 1 5 5 C 1.34183 * 109.12397 * 359.72204 * 4 3 2 6 6 C 1.36415 * 125.80613 * 179.80863 * 2 1 3 7 7 C 1.47380 * 127.18807 * 0.02562 * 6 2 1 8 8 O 1.21616 * 120.00136 * 359.97438 * 7 6 2 9 9 N 1.34772 * 120.00041 * 179.71167 * 7 6 2 10 10 C 1.46507 * 119.99978 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46816 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46816 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99734 * 269.99748 * 12 11 10 14 14 H 1.07997 * 119.99910 * 144.92113 * 13 12 11 15 15 C 1.38816 * 120.00071 * 324.92146 * 13 12 11 16 16 N 1.31618 * 119.99950 * 337.94951 * 15 13 12 17 17 Si 1.86794 * 120.00005 * 157.94838 * 15 13 12 18 18 H 1.48504 * 109.47193 * 59.99833 * 17 15 13 19 19 H 1.48504 * 109.47190 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47591 * 300.00139 * 17 15 13 21 21 C 1.46496 * 120.00027 * 89.99666 * 12 11 10 22 22 C 1.53001 * 117.49607 * 183.23786 * 21 12 11 23 23 C 1.53004 * 117.49775 * 114.58036 * 21 12 11 24 24 H 1.08999 * 109.47451 * 270.19414 * 1 2 3 25 25 H 1.09002 * 109.46968 * 30.19255 * 1 2 3 26 26 H 1.09003 * 109.47367 * 150.18967 * 1 2 3 27 27 H 1.08000 * 125.43867 * 179.68825 * 4 3 2 28 28 H 1.07998 * 127.02519 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00246 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46708 * 299.99296 * 10 9 7 31 31 H 1.08996 * 109.47276 * 59.99760 * 10 9 7 32 32 H 1.09000 * 109.47024 * 299.99246 * 11 10 9 33 33 H 1.08996 * 109.47276 * 59.99903 * 11 10 9 34 34 H 0.97004 * 119.99808 * 175.77065 * 16 15 13 35 35 H 1.08991 * 115.55218 * 328.90804 * 21 12 11 36 36 H 1.08998 * 117.50232 * 0.02562 * 22 21 12 37 37 H 1.08998 * 117.49658 * 145.02581 * 22 21 12 38 38 H 1.09001 * 117.49989 * 214.98030 * 23 21 12 39 39 H 1.08999 * 117.49840 * 359.97144 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0063 5 6 3.6849 -0.5991 -0.0045 6 6 2.3050 -1.1063 0.0037 7 6 1.8740 -2.5157 0.0079 8 8 0.6890 -2.7892 0.0088 9 7 2.7930 -3.5014 0.0054 10 6 2.3645 -4.9024 0.0090 11 6 3.5948 -5.8120 0.0044 12 7 3.1663 -7.2130 0.0086 13 6 2.9718 -7.8659 1.1965 14 1 2.1854 -8.6006 1.2864 15 6 3.7855 -7.5834 2.2851 16 7 4.9740 -7.0500 2.0975 17 14 3.1936 -7.9602 4.0163 18 1 2.9204 -9.4146 4.1404 19 1 4.2408 -7.5686 4.9937 20 1 1.9493 -7.1977 4.2911 21 6 2.9459 -7.9154 -1.2579 22 6 2.4264 -9.3528 -1.1875 23 6 3.8782 -9.0822 -1.5902 24 1 -0.3634 0.0035 1.0276 25 1 -0.3633 0.8883 -0.5168 26 1 -0.3634 -0.8917 -0.5109 27 1 4.4172 1.4285 -0.0124 28 1 4.5927 -1.1840 -0.0087 29 1 3.7382 -3.2834 0.0004 30 1 1.7707 -5.0984 0.9017 31 1 1.7632 -5.1008 -0.8782 32 1 4.1883 -5.6159 -0.8886 33 1 4.1964 -5.6138 0.8914 34 1 5.5174 -6.7959 2.8598 35 1 2.6008 -7.2955 -2.0854 36 1 2.2482 -9.7757 -0.1988 37 1 1.7398 -9.6786 -1.9689 38 1 4.1461 -9.2301 -2.6364 39 1 4.6558 -9.3268 -0.8667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753151853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:39 Heat of formation + Delta-G solvation = 3.598052 kcal Electronic energy + Delta-G solvation = -21298.018256 eV Core-core repulsion = 18015.130026 eV Total energy + Delta-G solvation = -3282.888229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -43.52099 -40.43450 -38.82926 -36.33966 -35.01806 -34.02535 -32.88017 -32.50772 -29.61435 -27.76721 -26.33939 -24.42424 -23.31142 -22.89275 -21.88444 -21.59666 -20.78961 -18.96557 -18.12201 -17.37519 -17.28299 -16.99747 -16.69142 -16.27112 -16.22091 -15.62210 -15.33692 -14.50147 -14.42576 -14.40912 -14.02001 -13.82510 -13.80274 -13.71861 -13.27529 -12.92539 -12.68050 -12.64432 -12.50054 -12.14349 -11.92437 -11.69476 -11.38820 -11.10653 -10.90491 -10.84318 -10.50389 -10.06804 -9.51256 -8.58991 -7.85270 -5.49229 0.33190 1.14083 1.42902 1.46414 1.52268 1.84068 2.25782 2.33195 2.49953 3.12752 3.39539 3.54115 3.63716 3.83388 3.91276 4.29198 4.34621 4.35859 4.40483 4.51081 4.59279 4.61405 4.66556 4.74631 4.79816 4.90576 4.94235 5.03601 5.18890 5.23182 5.32061 5.38238 5.47018 5.54240 5.65559 5.74359 6.04115 6.40860 6.59968 7.09958 7.22982 7.79293 8.28667 9.06670 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.004281 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.687319 B = 6538.504886 C = 7112.302057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 O -0.179 6.179 4 C -0.026 4.026 5 C -0.202 4.202 6 C -0.272 4.272 7 C 0.579 3.421 8 O -0.585 6.585 9 N -0.706 5.706 10 C 0.123 3.877 11 C 0.144 3.856 12 N -0.565 5.565 13 C -0.264 4.264 14 H 0.060 0.940 15 C -0.030 4.030 16 N -0.908 5.908 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.286 1.286 21 C 0.097 3.903 22 C -0.183 4.183 23 C -0.211 4.211 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.253 0.747 28 H 0.174 0.826 29 H 0.410 0.590 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.253 0.747 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 14.913 -6.321 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 O -0.075 6.075 4 C -0.090 4.090 5 C -0.221 4.221 6 C -0.277 4.277 7 C 0.368 3.632 8 O -0.467 6.467 9 N -0.356 5.356 10 C -0.003 4.003 11 C 0.017 3.983 12 N -0.282 5.282 13 C -0.394 4.394 14 H 0.077 0.923 15 C -0.228 4.228 16 N -0.551 5.551 17 Si 0.777 3.223 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.212 1.212 21 C -0.011 4.011 22 C -0.222 4.222 23 C -0.251 4.251 24 H 0.112 0.888 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.269 0.731 28 H 0.192 0.808 29 H 0.245 0.755 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.385 14.967 -6.187 16.370 hybrid contribution 0.535 -0.686 1.175 1.462 sum -1.850 14.280 -5.012 15.247 Atomic orbital electron populations 1.20611 0.82898 1.05269 1.04858 1.23086 0.94934 0.83129 0.97318 1.83785 1.18026 1.34387 1.71282 1.24694 0.83499 0.96556 1.04287 1.23174 0.96043 0.95584 1.07292 1.21252 0.95533 0.92760 1.18127 1.17673 0.85163 0.84893 0.75471 1.90702 1.18062 1.84890 1.53079 1.45718 1.10169 1.05867 1.73889 1.21823 0.99446 0.79457 0.99560 1.20956 0.93007 0.82272 1.02081 1.43404 1.77763 1.06514 1.00523 1.19193 1.09808 1.21452 0.88967 0.92251 1.25669 0.94096 1.01279 1.01771 1.70117 1.08409 1.46129 1.30455 0.85648 0.77299 0.78328 0.81071 1.20086 1.21492 1.21231 1.21543 1.01782 0.87909 0.89841 1.23050 0.96960 1.00056 1.02086 1.23262 0.92965 1.08386 1.00532 0.88816 0.87790 0.89283 0.73101 0.80827 0.75453 0.94901 0.93289 0.93587 0.90047 0.93759 0.87146 0.90705 0.87163 0.87839 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.89 71.23 0.70 -1.02 16 2 C 0.07 1.74 7.37 25.26 0.19 1.93 16 3 O -0.18 -3.78 10.52 4.37 0.05 -3.74 16 4 C -0.03 -0.42 12.03 66.89 0.80 0.38 16 5 C -0.20 -4.31 10.60 23.65 0.25 -4.05 16 6 C -0.27 -7.87 6.31 -18.99 -0.12 -7.99 16 7 C 0.58 20.88 7.81 86.65 0.68 21.56 16 8 O -0.58 -24.63 14.84 -4.08 -0.06 -24.69 16 9 N -0.71 -24.79 5.55 -466.41 -2.59 -27.38 16 10 C 0.12 5.12 6.00 86.38 0.52 5.64 16 11 C 0.14 6.40 5.45 86.38 0.47 6.87 16 12 N -0.56 -27.34 2.78 -678.03 -1.88 -29.23 16 13 C -0.26 -14.15 8.63 84.03 0.73 -13.43 16 14 H 0.06 3.22 6.55 -2.91 -0.02 3.20 16 15 C -0.03 -1.64 4.96 84.86 0.42 -1.22 16 16 N -0.91 -50.69 11.33 21.65 0.25 -50.44 16 17 Si 0.95 44.42 29.61 68.60 2.03 46.45 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 C 0.10 4.00 6.56 44.99 0.30 4.30 16 22 C -0.18 -6.93 9.80 30.62 0.30 -6.63 16 23 C -0.21 -8.19 10.36 30.62 0.32 -7.87 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 2.32 6.48 -2.39 -0.02 2.30 16 27 H 0.25 1.53 8.06 -2.91 -0.02 1.50 16 28 H 0.17 2.98 7.74 -2.91 -0.02 2.95 16 29 H 0.41 12.21 7.64 -92.71 -0.71 11.50 16 30 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.88 8.07 -2.39 -0.02 1.86 16 33 H 0.08 4.10 5.35 -2.39 -0.01 4.09 16 34 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 35 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.07 3.19 6.37 -2.39 -0.02 3.17 16 37 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -67.83 331.46 3.70 -64.14 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.36 Total: 26.42 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.55 Total: -1.53 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -4.23 Total: -107.05 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.01 Total: -28.43 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.83 3.70 -64.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753151853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.734 kcal (2) G-P(sol) polarization free energy of solvation -67.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds