Wall clock time and date at job start Mon Mar 30 2020 23:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47270 * 59.99280 * 11 10 9 13 13 O 1.42910 * 109.46693 * 299.99900 * 11 10 9 14 14 C 1.53003 * 109.47404 * 180.02562 * 11 10 9 15 15 N 1.46495 * 109.46852 * 184.99625 * 14 11 10 16 16 C 1.36942 * 119.99570 * 179.97438 * 15 14 11 17 17 H 1.07991 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99779 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99757 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47287 * 60.00408 * 20 18 16 22 22 H 1.48507 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47290 * 299.99864 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47333 * 299.99984 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 0.96696 * 113.99704 * 299.99825 * 13 11 10 35 35 H 1.08998 * 109.46453 * 304.99603 * 14 11 10 36 36 H 1.08998 * 109.47167 * 64.99453 * 14 11 10 37 37 H 0.97000 * 120.00804 * 359.97438 * 15 14 11 38 38 H 0.97003 * 119.99859 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1846 -2.8792 0.8741 13 8 8.2658 -2.6893 -1.1817 14 6 8.6935 -4.7688 -0.0274 15 7 10.1283 -4.4989 0.0945 16 6 11.0212 -5.5370 0.1104 17 1 10.6679 -6.5545 0.0326 18 6 12.3808 -5.2813 0.2253 19 7 12.8115 -4.0412 0.3196 20 14 13.5989 -6.6973 0.2462 21 1 13.4845 -7.4675 -1.0183 22 1 14.9780 -6.1621 0.3772 23 1 13.3029 -7.5881 1.3969 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3094 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 8.0608 -3.1342 -2.0153 35 1 8.3671 -5.3845 0.8107 36 1 8.5010 -5.2956 -0.9620 37 1 10.4458 -3.5850 0.1640 38 1 13.7616 -3.8625 0.3996 39 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753903787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:18 Heat of formation + Delta-G solvation = -58.861580 kcal Electronic energy + Delta-G solvation = -20431.061348 eV Core-core repulsion = 17145.464666 eV Total energy + Delta-G solvation = -3285.596682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40021 -38.79145 -37.54934 -34.52884 -34.04835 -33.12130 -31.53364 -31.21395 -29.11165 -27.23213 -25.66988 -23.80869 -22.37890 -22.12398 -21.43284 -20.14049 -18.02284 -17.17849 -16.52301 -16.43147 -15.99309 -15.59207 -15.05540 -14.82264 -14.54741 -14.45628 -14.00960 -13.86481 -13.67618 -13.26564 -12.97987 -12.76516 -12.58226 -12.39434 -12.18731 -11.90124 -11.85806 -11.37805 -10.97649 -10.81037 -10.64290 -10.22802 -10.13457 -9.82106 -9.52438 -9.32758 -9.11800 -8.99937 -8.90856 -6.95496 -5.77254 -3.07069 0.59640 1.04198 2.70428 3.03995 3.43741 3.47903 3.49135 3.61394 4.43362 4.44367 4.53138 4.55587 4.69546 4.81998 4.85374 4.94956 5.02558 5.21886 5.25327 5.29008 5.41755 5.54513 5.60052 5.63630 5.73199 5.78774 5.93081 6.02635 6.07462 6.17412 6.20376 6.34636 6.49706 6.58650 6.65444 7.41968 7.67043 7.90462 8.11489 8.40868 9.52412 10.08681 10.44378 11.45041 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048536 B = 0.002629 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.757054 B =10647.117412 C =11098.361912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.128 4.128 7 C 0.555 3.445 8 O -0.541 6.541 9 N -0.715 5.715 10 C 0.089 3.911 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.127 3.873 15 N -0.726 5.726 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.062 4.062 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.405 0.595 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.374 0.626 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 11.602 -1.120 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.131 4.131 7 C 0.342 3.658 8 O -0.420 6.420 9 N -0.367 5.367 10 C -0.035 4.035 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.001 4.001 15 N -0.371 5.371 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.081 4.081 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.241 0.759 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.221 0.779 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.223 0.777 38 H 0.066 0.934 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.266 11.093 -0.675 25.784 hybrid contribution 0.986 -0.504 -0.321 1.153 sum -22.280 10.589 -0.996 24.688 Atomic orbital electron populations 1.20804 0.90674 1.03034 1.02588 1.19918 0.96483 0.92812 1.00525 1.21258 0.94347 0.97662 0.98350 1.21116 0.94246 0.98132 1.00598 1.21378 1.00089 0.91801 0.97666 1.19975 0.94384 0.92978 1.05794 1.18292 0.82174 0.88813 0.76521 1.90768 1.68586 1.32539 1.50105 1.45838 1.05858 1.10404 1.74614 1.22137 0.92314 0.85697 1.03369 1.22414 0.90124 0.94849 0.89742 0.87686 1.86572 1.86871 1.46581 1.15783 1.21196 0.86908 0.93210 0.98821 1.42231 0.98982 1.07205 1.88658 1.19176 0.87507 0.87988 1.42900 0.91240 1.24769 0.96966 0.96388 1.02748 1.69668 1.14021 1.17395 1.56774 0.86244 0.80551 0.81364 0.77856 1.21231 1.21644 1.21228 1.21165 0.92650 0.98398 0.95880 0.90965 0.91373 0.91248 0.85644 0.85243 0.85337 0.75893 0.90240 0.90877 0.77931 0.95323 0.95866 0.77725 0.93409 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.10 -0.82 5.87 -104.68 -0.61 -1.44 16 3 C -0.10 -0.74 9.69 -39.49 -0.38 -1.12 16 4 C -0.12 -0.97 10.03 -39.64 -0.40 -1.37 16 5 C -0.09 -0.84 9.54 -39.19 -0.37 -1.21 16 6 C -0.13 -1.46 5.87 -104.97 -0.62 -2.08 16 7 C 0.55 7.58 7.77 -12.33 -0.10 7.48 16 8 O -0.54 -9.17 16.35 5.32 0.09 -9.08 16 9 N -0.72 -8.77 5.40 -61.25 -0.33 -9.10 16 10 C 0.09 1.19 5.34 -4.04 -0.02 1.17 16 11 C 0.09 1.35 3.09 -26.73 -0.08 1.27 16 12 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 13 O -0.55 -8.60 13.03 -35.23 -0.46 -9.06 16 14 C 0.13 2.46 5.90 -4.04 -0.02 2.44 16 15 N -0.73 -18.38 5.55 -59.91 -0.33 -18.71 16 16 C -0.24 -6.89 9.99 -15.05 -0.15 -7.04 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 20 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.06 -0.66 9.24 -39.19 -0.36 -1.02 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 29 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 31 H 0.40 4.31 6.38 -40.82 -0.26 4.04 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.37 4.84 9.04 45.56 0.41 5.25 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.39 10.50 7.67 -40.82 -0.31 10.18 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 39 H 0.14 1.45 7.65 -52.49 -0.40 1.05 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -34.02 336.53 -7.79 -41.81 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -4.67 Total: 12.95 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.86 Total: -3.69 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.06 Total: -55.45 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.37 Total: -18.15 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.02 -7.79 -41.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753903787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.055 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds