Wall clock time and date at job start Mon Mar 30 2020 23:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47270 * 59.99280 * 11 10 9 13 13 O 1.42910 * 109.46693 * 299.99900 * 11 10 9 14 14 C 1.53003 * 109.47404 * 180.02562 * 11 10 9 15 15 N 1.46495 * 109.46852 * 184.99625 * 14 11 10 16 16 C 1.36942 * 119.99570 * 179.97438 * 15 14 11 17 17 H 1.07991 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99779 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99757 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47287 * 60.00408 * 20 18 16 22 22 H 1.48507 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47290 * 299.99864 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47333 * 299.99984 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 0.96696 * 113.99704 * 299.99825 * 13 11 10 35 35 H 1.08998 * 109.46453 * 304.99603 * 14 11 10 36 36 H 1.08998 * 109.47167 * 64.99453 * 14 11 10 37 37 H 0.97000 * 120.00804 * 359.97438 * 15 14 11 38 38 H 0.97003 * 119.99859 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1846 -2.8792 0.8741 13 8 8.2658 -2.6893 -1.1817 14 6 8.6935 -4.7688 -0.0274 15 7 10.1283 -4.4989 0.0945 16 6 11.0212 -5.5370 0.1104 17 1 10.6679 -6.5545 0.0326 18 6 12.3808 -5.2813 0.2253 19 7 12.8115 -4.0412 0.3196 20 14 13.5989 -6.6973 0.2462 21 1 13.4845 -7.4675 -1.0183 22 1 14.9780 -6.1621 0.3772 23 1 13.3029 -7.5881 1.3969 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3094 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 8.0608 -3.1342 -2.0153 35 1 8.3671 -5.3845 0.8107 36 1 8.5010 -5.2956 -0.9620 37 1 10.4458 -3.5850 0.1640 38 1 13.7616 -3.8625 0.3996 39 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753903787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:18 Heat of formation + Delta-G solvation = -84.656229 kcal Electronic energy + Delta-G solvation = -20432.179888 eV Core-core repulsion = 17145.464666 eV Total energy + Delta-G solvation = -3286.715222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32831 -39.68558 -38.81696 -36.12181 -35.45523 -33.81391 -33.18938 -32.17943 -30.54686 -27.91377 -27.13526 -25.13770 -23.82979 -22.89214 -22.69553 -21.13728 -19.28847 -18.85113 -17.72824 -17.28441 -17.16203 -16.63857 -16.41999 -15.96147 -15.82865 -15.53148 -15.26499 -14.88180 -14.64967 -14.58423 -14.22912 -13.92768 -13.86700 -13.31582 -13.06309 -12.97347 -12.84762 -12.72300 -12.55684 -12.21152 -12.02670 -11.98045 -11.82249 -11.27944 -10.98708 -10.88597 -10.30823 -9.90879 -9.67947 -9.02454 -7.95629 -5.25367 -0.16273 0.37673 1.47335 1.50503 1.56667 1.79591 2.01001 2.55715 2.85081 3.34817 3.44718 3.53889 3.66103 3.83312 3.96016 3.98621 4.15653 4.19909 4.36208 4.38236 4.40017 4.58432 4.63090 4.74775 4.83473 4.88967 4.92168 4.98764 5.18368 5.23731 5.27618 5.33805 5.42844 5.47281 5.57266 5.95193 6.25383 6.42531 6.76616 7.08678 7.32518 8.07291 8.30709 9.27355 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048536 B = 0.002629 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.757054 B =10647.117412 C =11098.361912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.123 4.123 5 C -0.095 4.095 6 C -0.151 4.151 7 C 0.553 3.447 8 O -0.583 6.583 9 N -0.706 5.706 10 C 0.101 3.899 11 C 0.109 3.891 12 H 0.102 0.898 13 O -0.562 6.562 14 C 0.123 3.877 15 N -0.740 5.740 16 C -0.250 4.250 17 H 0.076 0.924 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.976 3.024 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.277 1.277 24 C -0.081 4.081 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.414 0.586 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.385 0.615 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.377 0.623 38 H 0.252 0.748 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.164 12.706 -1.302 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.141 4.141 5 C -0.113 4.113 6 C -0.154 4.154 7 C 0.342 3.658 8 O -0.465 6.465 9 N -0.358 5.358 10 C -0.024 4.024 11 C 0.049 3.951 12 H 0.119 0.881 13 O -0.369 6.369 14 C -0.005 4.005 15 N -0.383 5.383 16 C -0.382 4.382 17 H 0.094 0.906 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.203 1.203 24 C -0.100 4.100 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.209 0.791 38 H 0.061 0.939 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.312 12.192 -0.869 27.212 hybrid contribution 1.194 -0.791 -0.282 1.460 sum -23.119 11.401 -1.151 25.803 Atomic orbital electron populations 1.20861 0.88951 1.03889 1.03338 1.20220 0.97836 0.92369 0.99701 1.21671 0.94514 0.98424 0.96455 1.21489 0.94654 0.98574 0.99345 1.21560 1.00800 0.91560 0.97422 1.19899 0.94676 0.92557 1.08304 1.18703 0.82284 0.89270 0.75518 1.90736 1.69339 1.34133 1.52249 1.45720 1.05599 1.10404 1.74058 1.21903 0.90881 0.86212 1.03410 1.22090 0.90632 0.92635 0.89739 0.88052 1.86551 1.87066 1.46816 1.16431 1.21399 0.84371 0.95619 0.99082 1.42411 1.01127 1.06066 1.88706 1.19608 0.88305 0.88956 1.41348 0.90590 1.25615 0.98905 0.98833 1.03450 1.69827 1.13929 1.19421 1.58613 0.85183 0.77749 0.78422 0.78205 1.20335 1.22102 1.20342 1.21224 0.92619 0.98972 0.97183 0.90174 0.89493 0.91475 0.82609 0.82541 0.84196 0.74805 0.90486 0.90671 0.76556 0.94830 0.95051 0.79097 0.93942 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 2 C -0.10 -1.56 5.87 -19.90 -0.12 -1.68 16 3 C -0.09 -1.13 9.69 22.33 0.22 -0.91 16 4 C -0.12 -1.59 10.03 22.23 0.22 -1.37 16 5 C -0.09 -1.62 9.54 22.53 0.21 -1.40 16 6 C -0.15 -3.43 5.87 -20.09 -0.12 -3.54 16 7 C 0.55 15.29 7.77 86.79 0.67 15.96 16 8 O -0.58 -20.36 16.35 -3.87 -0.06 -20.43 16 9 N -0.71 -16.98 5.40 -465.98 -2.52 -19.49 16 10 C 0.10 2.62 5.34 86.38 0.46 3.08 16 11 C 0.11 3.25 3.09 30.60 0.09 3.35 16 12 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 13 O -0.56 -16.94 13.03 -148.98 -1.94 -18.88 16 14 C 0.12 4.66 5.90 86.38 0.51 5.17 16 15 N -0.74 -37.45 5.55 -343.46 -1.91 -39.36 16 16 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 17 H 0.08 4.06 7.83 -2.92 -0.02 4.04 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 19 N -0.97 -59.65 13.06 21.65 0.28 -59.36 16 20 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 C -0.08 -1.72 9.24 22.53 0.21 -1.52 16 25 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.55 8.08 -2.39 -0.02 0.53 16 27 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 29 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.14 1.94 6.41 -2.91 -0.02 1.92 16 31 H 0.41 8.40 6.38 -92.71 -0.59 7.81 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.39 9.53 9.04 -74.06 -0.67 8.86 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.38 20.57 7.67 -92.71 -0.71 19.86 16 38 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.12 2.80 7.65 -2.91 -0.02 2.78 16 Total: -1.00 -73.21 336.53 -0.62 -73.83 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.89 Total: 35.82 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 4.39 Total: -0.38 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -4.14 Total: -118.21 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -2.00 Total: -39.31 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.21 -0.62 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753903787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.825 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds