Wall clock time and date at job start Mon Mar 30 2020 23:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37979 * 120.07116 * 2 1 4 4 C 1.38342 * 120.14766 * 180.25290 * 3 2 1 5 5 C 1.38378 * 120.28561 * 359.74259 * 4 3 2 6 6 C 1.37935 * 120.15278 * 359.97438 * 5 4 3 7 7 C 1.39554 * 120.07730 * 179.71754 * 2 1 3 8 8 C 1.47848 * 120.14179 * 0.02628 * 7 2 1 9 9 O 1.21549 * 119.99951 * 353.47501 * 8 7 2 10 10 N 1.34780 * 119.99544 * 173.47663 * 8 7 2 11 11 C 1.46505 * 119.99544 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46694 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47296 * 60.00419 * 12 11 10 14 14 O 1.42900 * 109.47434 * 300.00134 * 12 11 10 15 15 C 1.53005 * 109.46980 * 180.02562 * 12 11 10 16 16 N 1.46496 * 109.47350 * 185.00435 * 15 12 11 17 17 C 1.36935 * 120.00001 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00125 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99779 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47382 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47436 * 119.99643 * 21 19 17 24 24 H 1.48500 * 109.47190 * 239.99485 * 21 19 17 25 25 H 1.08999 * 109.47306 * 263.68739 * 1 2 3 26 26 H 1.08998 * 109.47254 * 23.69112 * 1 2 3 27 27 H 1.09007 * 109.46831 * 143.68830 * 1 2 3 28 28 H 1.08005 * 119.93351 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.85966 * 179.76143 * 4 3 2 30 30 H 1.08002 * 119.92581 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.07822 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00254 * 359.97438 * 10 8 7 33 33 H 1.09006 * 109.46803 * 60.00169 * 11 10 8 34 34 H 1.08994 * 109.46945 * 300.00297 * 11 10 8 35 35 H 0.96703 * 113.99476 * 299.99804 * 14 12 11 36 36 H 1.09008 * 109.46769 * 305.00018 * 15 12 11 37 37 H 1.09003 * 109.47172 * 64.99479 * 15 12 11 38 38 H 0.97001 * 120.00180 * 359.97438 * 16 15 12 39 39 H 0.96999 * 119.99718 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1959 -0.0053 5 6 4.2813 0.0019 -0.0052 6 6 3.6024 -1.1988 0.0006 7 6 2.2064 -1.2076 0.0060 8 6 1.4721 -2.4908 0.0117 9 8 0.2625 -2.4983 0.1309 10 7 2.1440 -3.6523 -0.1152 11 6 1.4164 -4.9238 -0.1089 12 6 2.4070 -6.0789 -0.2678 13 1 3.1186 -6.0635 0.5577 14 8 3.1090 -5.9378 -1.5044 15 6 1.6471 -7.4069 -0.2619 16 7 2.6030 -8.5167 -0.2936 17 6 2.1514 -9.8094 -0.2951 18 1 1.0906 -10.0109 -0.2724 19 6 3.0571 -10.8610 -0.3257 20 7 4.3498 -10.6154 -0.3539 21 14 2.4411 -12.6244 -0.3270 22 1 0.9565 -12.6303 -0.2916 23 1 2.9099 -13.3117 -1.5570 24 1 2.9671 -13.3334 0.8672 25 1 -0.3634 -0.1130 1.0214 26 1 -0.3633 0.9410 -0.4129 27 1 -0.3633 -0.8282 -0.6086 28 1 1.6585 2.1295 -0.0004 29 1 4.1182 2.1332 -0.0092 30 1 5.3613 0.0102 -0.0098 31 1 4.1495 -2.1299 0.0011 32 1 3.1093 -3.6463 -0.2106 33 1 0.7051 -4.9395 -0.9348 34 1 0.8806 -5.0312 0.8341 35 1 2.5371 -5.9432 -2.2841 36 1 1.0414 -7.4749 0.6419 37 1 1.0002 -7.4592 -1.1376 38 1 3.5557 -8.3357 -0.3144 39 1 4.9826 -11.3502 -0.3757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753904305.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:25 Heat of formation + Delta-G solvation = -53.264184 kcal Electronic energy + Delta-G solvation = -20709.724011 eV Core-core repulsion = 17424.370050 eV Total energy + Delta-G solvation = -3285.353961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52983 -38.65735 -37.53370 -34.63030 -34.06095 -32.75629 -31.76811 -31.16295 -29.02950 -27.22842 -25.47992 -23.80858 -22.65997 -21.62979 -21.40092 -20.43580 -18.08638 -17.17406 -16.53373 -16.12792 -16.02344 -15.59821 -15.12161 -14.90115 -14.74988 -14.46889 -13.77018 -13.60033 -13.48119 -13.37458 -12.98943 -12.65792 -12.35204 -12.27154 -12.21675 -11.98890 -11.85005 -11.35992 -10.97989 -10.84719 -10.64272 -10.16135 -9.88513 -9.78133 -9.49480 -9.33265 -9.13556 -8.93527 -8.89061 -6.95880 -5.78051 -3.07744 0.61955 1.06484 2.73347 3.05983 3.42394 3.47986 3.50307 3.60715 4.46371 4.51696 4.53690 4.58692 4.68947 4.75972 4.86551 5.02665 5.16077 5.22331 5.38960 5.54131 5.54937 5.59920 5.62368 5.66439 5.78550 5.92808 5.98237 6.04715 6.13715 6.17252 6.31164 6.42296 6.49254 6.61394 6.64940 7.43211 7.67480 7.90312 8.13386 8.40056 9.51829 10.08088 10.43735 11.44411 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.002828 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.161922 B = 9899.381228 C =10452.645414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.024 4.024 3 C -0.134 4.134 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.080 4.080 7 C -0.139 4.139 8 C 0.554 3.446 9 O -0.536 6.536 10 N -0.716 5.716 11 C 0.090 3.910 12 C 0.088 3.912 13 H 0.105 0.895 14 O -0.553 6.553 15 C 0.127 3.873 16 N -0.726 5.726 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.404 0.596 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.374 0.626 36 H 0.029 0.971 37 H 0.024 0.976 38 H 0.388 0.612 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 24.810 0.163 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.025 4.025 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.154 4.154 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.342 3.658 9 O -0.415 6.415 10 N -0.368 5.368 11 C -0.034 4.034 12 C 0.028 3.972 13 H 0.123 0.877 14 O -0.358 6.358 15 C -0.001 4.001 16 N -0.371 5.371 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.221 0.779 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.223 0.777 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.845 24.637 0.650 24.809 hybrid contribution 0.126 -1.000 -0.346 1.065 sum -2.719 23.637 0.304 23.794 Atomic orbital electron populations 1.21090 0.89999 1.02978 1.03705 1.20081 0.96937 0.91496 0.93960 1.21073 0.94297 0.97490 1.02365 1.21355 0.94272 0.98323 0.97071 1.21102 1.00305 0.92160 1.01794 1.21374 0.92971 0.98833 0.96718 1.19835 0.93650 0.93264 1.07456 1.18275 0.87099 0.83715 0.76680 1.90722 1.13714 1.87204 1.49810 1.45864 1.11472 1.05585 1.73905 1.22122 0.95402 0.82615 1.03297 1.22410 0.94144 0.92755 0.87843 0.87716 1.86574 1.37907 1.95907 1.15411 1.21200 0.92972 0.87059 0.98899 1.42248 1.04903 1.00649 1.89307 1.19264 0.92211 0.82931 1.43017 0.91138 1.24768 0.95287 0.98024 1.02834 1.69685 1.00085 1.30662 1.57382 0.86103 0.77764 0.85013 0.77214 1.20537 1.21809 1.21816 0.90647 0.92523 0.88594 0.85451 0.85634 0.85364 0.85365 0.75973 0.90920 0.90263 0.77941 0.95329 0.95873 0.77730 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.73 36.01 0.31 -0.94 16 2 C -0.02 -0.25 5.91 -104.23 -0.62 -0.87 16 3 C -0.13 -1.14 9.66 -39.64 -0.38 -1.52 16 4 C -0.09 -0.69 10.04 -39.49 -0.40 -1.09 16 5 C -0.14 -1.08 10.03 -39.64 -0.40 -1.48 16 6 C -0.08 -0.75 9.53 -39.18 -0.37 -1.13 16 7 C -0.14 -1.58 5.87 -104.97 -0.62 -2.20 16 8 C 0.55 7.34 7.70 -12.33 -0.09 7.25 16 9 O -0.54 -8.43 13.35 5.32 0.07 -8.36 16 10 N -0.72 -8.63 5.40 -61.25 -0.33 -8.96 16 11 C 0.09 1.18 5.34 -4.04 -0.02 1.15 16 12 C 0.09 1.34 3.09 -26.73 -0.08 1.26 16 13 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 14 O -0.55 -8.58 13.03 -35.23 -0.46 -9.04 16 15 C 0.13 2.45 5.90 -4.04 -0.02 2.43 16 16 N -0.73 -18.33 5.55 -59.90 -0.33 -18.66 16 17 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.46 8.04 -51.93 -0.42 0.04 16 27 H 0.10 1.19 5.86 -51.93 -0.30 0.88 16 28 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.13 1.01 6.46 -52.49 -0.34 0.67 16 32 H 0.40 4.28 6.42 -40.82 -0.26 4.02 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.37 4.82 9.04 45.56 0.41 5.23 16 36 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.39 10.48 7.67 -40.82 -0.31 10.16 16 39 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -33.37 331.21 -7.87 -41.24 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -4.57 Total: 13.56 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.94 Total: -4.60 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.06 Total: -55.22 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.39 Total: -17.40 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.37 -7.87 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753904305.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.023 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds