Wall clock time and date at job start Mon Mar 30 2020 23:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37979 * 120.07116 * 2 1 4 4 C 1.38342 * 120.14766 * 180.25290 * 3 2 1 5 5 C 1.38378 * 120.28561 * 359.74259 * 4 3 2 6 6 C 1.37935 * 120.15278 * 359.97438 * 5 4 3 7 7 C 1.39554 * 120.07730 * 179.71754 * 2 1 3 8 8 C 1.47848 * 120.14179 * 0.02628 * 7 2 1 9 9 O 1.21549 * 119.99951 * 353.47501 * 8 7 2 10 10 N 1.34780 * 119.99544 * 173.47663 * 8 7 2 11 11 C 1.46505 * 119.99544 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46694 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47296 * 60.00419 * 12 11 10 14 14 O 1.42900 * 109.47434 * 300.00134 * 12 11 10 15 15 C 1.53005 * 109.46980 * 180.02562 * 12 11 10 16 16 N 1.46496 * 109.47350 * 185.00435 * 15 12 11 17 17 C 1.36935 * 120.00001 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00125 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99779 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47382 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47436 * 119.99643 * 21 19 17 24 24 H 1.48500 * 109.47190 * 239.99485 * 21 19 17 25 25 H 1.08999 * 109.47306 * 263.68739 * 1 2 3 26 26 H 1.08998 * 109.47254 * 23.69112 * 1 2 3 27 27 H 1.09007 * 109.46831 * 143.68830 * 1 2 3 28 28 H 1.08005 * 119.93351 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.85966 * 179.76143 * 4 3 2 30 30 H 1.08002 * 119.92581 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.07822 * 180.02562 * 6 5 4 32 32 H 0.96998 * 120.00254 * 359.97438 * 10 8 7 33 33 H 1.09006 * 109.46803 * 60.00169 * 11 10 8 34 34 H 1.08994 * 109.46945 * 300.00297 * 11 10 8 35 35 H 0.96703 * 113.99476 * 299.99804 * 14 12 11 36 36 H 1.09008 * 109.46769 * 305.00018 * 15 12 11 37 37 H 1.09003 * 109.47172 * 64.99479 * 15 12 11 38 38 H 0.97001 * 120.00180 * 359.97438 * 16 15 12 39 39 H 0.96999 * 119.99718 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1959 -0.0053 5 6 4.2813 0.0019 -0.0052 6 6 3.6024 -1.1988 0.0006 7 6 2.2064 -1.2076 0.0060 8 6 1.4721 -2.4908 0.0117 9 8 0.2625 -2.4983 0.1309 10 7 2.1440 -3.6523 -0.1152 11 6 1.4164 -4.9238 -0.1089 12 6 2.4070 -6.0789 -0.2678 13 1 3.1186 -6.0635 0.5577 14 8 3.1090 -5.9378 -1.5044 15 6 1.6471 -7.4069 -0.2619 16 7 2.6030 -8.5167 -0.2936 17 6 2.1514 -9.8094 -0.2951 18 1 1.0906 -10.0109 -0.2724 19 6 3.0571 -10.8610 -0.3257 20 7 4.3498 -10.6154 -0.3539 21 14 2.4411 -12.6244 -0.3270 22 1 0.9565 -12.6303 -0.2916 23 1 2.9099 -13.3117 -1.5570 24 1 2.9671 -13.3334 0.8672 25 1 -0.3634 -0.1130 1.0214 26 1 -0.3633 0.9410 -0.4129 27 1 -0.3633 -0.8282 -0.6086 28 1 1.6585 2.1295 -0.0004 29 1 4.1182 2.1332 -0.0092 30 1 5.3613 0.0102 -0.0098 31 1 4.1495 -2.1299 0.0011 32 1 3.1093 -3.6463 -0.2106 33 1 0.7051 -4.9395 -0.9348 34 1 0.8806 -5.0312 0.8341 35 1 2.5371 -5.9432 -2.2841 36 1 1.0414 -7.4749 0.6419 37 1 1.0002 -7.4592 -1.1376 38 1 3.5557 -8.3357 -0.3144 39 1 4.9826 -11.3502 -0.3757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753904305.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:24 Heat of formation + Delta-G solvation = -78.414135 kcal Electronic energy + Delta-G solvation = -20710.814595 eV Core-core repulsion = 17424.370050 eV Total energy + Delta-G solvation = -3286.444545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42297 -39.58650 -38.73852 -36.13929 -35.50055 -33.50453 -33.24331 -32.37444 -30.41726 -28.08460 -26.99335 -24.96367 -24.05071 -22.86899 -22.30537 -21.41860 -19.31483 -18.86947 -17.75346 -17.23403 -16.93527 -16.51778 -16.39619 -16.10300 -15.85801 -15.66986 -15.32351 -14.88789 -14.56888 -14.33112 -14.13557 -14.01963 -13.79378 -13.27710 -13.04747 -12.96533 -12.93817 -12.78932 -12.65596 -12.13032 -12.01923 -11.95729 -11.82448 -11.09270 -10.98889 -10.66794 -10.25655 -9.89455 -9.64586 -9.02574 -7.96148 -5.25723 -0.12184 0.40363 1.47459 1.48154 1.58339 1.84922 2.05808 2.55399 2.86531 3.35001 3.45638 3.55560 3.70165 3.87446 3.91322 3.99776 4.16605 4.19547 4.37697 4.41630 4.51678 4.60028 4.68169 4.75065 4.82288 4.84611 4.92288 5.00955 5.18314 5.21320 5.36136 5.41886 5.47820 5.51125 5.60749 5.97446 6.25266 6.46871 6.77058 7.14601 7.32321 8.07050 8.30337 9.27326 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.002828 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.161922 B = 9899.381228 C =10452.645414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.136 4.136 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.087 4.087 7 C -0.163 4.163 8 C 0.551 3.449 9 O -0.568 6.568 10 N -0.709 5.709 11 C 0.103 3.897 12 C 0.108 3.892 13 H 0.100 0.900 14 O -0.563 6.563 15 C 0.123 3.877 16 N -0.740 5.740 17 C -0.248 4.248 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.412 0.588 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.385 0.615 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.377 0.623 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 26.395 0.051 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 C -0.154 4.154 4 C -0.104 4.104 5 C -0.155 4.155 6 C -0.105 4.105 7 C -0.166 4.166 8 C 0.340 3.660 9 O -0.449 6.449 10 N -0.362 5.362 11 C -0.022 4.022 12 C 0.048 3.952 13 H 0.118 0.882 14 O -0.369 6.369 15 C -0.005 4.005 16 N -0.384 5.384 17 C -0.379 4.379 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.618 5.618 21 Si 0.804 3.196 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.249 0.751 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.209 0.791 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.668 26.248 0.529 26.389 hybrid contribution 0.058 -1.369 -0.323 1.408 sum -2.609 24.879 0.207 25.016 Atomic orbital electron populations 1.20989 0.90439 1.03074 1.02787 1.20261 0.96984 0.92246 0.94982 1.21365 0.95024 0.97466 1.01543 1.21776 0.94019 0.99529 0.95058 1.21469 1.01659 0.91717 1.00667 1.21561 0.92210 1.00157 0.96608 1.19821 0.94563 0.92452 1.09806 1.18665 0.86868 0.84512 0.75911 1.90706 1.15098 1.87708 1.51420 1.45757 1.11794 1.04987 1.73612 1.21868 0.94695 0.82352 1.03283 1.22092 0.93808 0.91460 0.87804 0.88167 1.86552 1.38633 1.95778 1.15961 1.21404 0.92527 0.87347 0.99174 1.42433 1.05240 1.01360 1.89318 1.19675 0.92508 0.84349 1.41394 0.90564 1.25606 0.95525 1.02127 1.03576 1.69837 1.01219 1.31532 1.59242 0.85053 0.77904 0.79961 0.76698 1.19020 1.21977 1.21969 0.91548 0.90328 0.91078 0.83212 0.82504 0.82898 0.84406 0.75055 0.90700 0.90499 0.76577 0.94812 0.95047 0.79114 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.73 71.24 0.62 -1.80 16 2 C -0.04 -0.90 5.91 -19.61 -0.12 -1.01 16 3 C -0.14 -1.99 9.66 22.23 0.21 -1.77 16 4 C -0.09 -1.01 10.04 22.33 0.22 -0.79 16 5 C -0.14 -1.81 10.03 22.23 0.22 -1.59 16 6 C -0.09 -1.50 9.53 22.53 0.21 -1.29 16 7 C -0.16 -3.65 5.87 -20.09 -0.12 -3.77 16 8 C 0.55 14.70 7.70 86.79 0.67 15.37 16 9 O -0.57 -18.38 13.35 -3.87 -0.05 -18.43 16 10 N -0.71 -16.81 5.40 -465.97 -2.52 -19.33 16 11 C 0.10 2.63 5.34 86.38 0.46 3.09 16 12 C 0.11 3.22 3.09 30.59 0.09 3.32 16 13 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 14 O -0.56 -17.02 13.03 -148.98 -1.94 -18.96 16 15 C 0.12 4.65 5.90 86.38 0.51 5.16 16 16 N -0.74 -37.42 5.55 -343.43 -1.91 -39.33 16 17 C -0.25 -13.84 9.99 84.04 0.84 -13.00 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 20 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 21 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 27 H 0.07 1.84 5.86 -2.38 -0.01 1.83 16 28 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 29 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 30 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 31 H 0.14 1.98 6.46 -2.91 -0.02 1.96 16 32 H 0.41 8.42 6.42 -92.71 -0.60 7.83 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.39 9.56 9.04 -74.06 -0.67 8.89 16 36 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.38 20.56 7.67 -92.71 -0.71 19.85 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -71.81 331.21 -0.69 -72.49 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.89 Total: 36.68 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.30 Total: -2.01 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.14 Total: -118.03 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.99 Total: -37.39 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.81 -0.69 -72.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753904305.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.920 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds