Wall clock time and date at job start Mon Mar 30 2020 23:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37976 * 120.07487 * 2 1 4 4 C 1.38337 * 120.14672 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.28984 * 0.02562 * 4 3 2 6 6 C 1.37933 * 120.14806 * 359.97438 * 5 4 3 7 7 C 1.39555 * 120.07261 * 179.97438 * 2 1 3 8 8 C 1.47847 * 120.14459 * 359.97438 * 7 2 1 9 9 O 1.21552 * 119.99966 * 353.76965 * 8 7 2 10 10 N 1.34781 * 120.00063 * 173.77033 * 8 7 2 11 11 C 1.46496 * 119.99926 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 8 13 13 H 1.09009 * 109.46978 * 305.00365 * 12 11 10 14 14 O 1.42899 * 109.47048 * 65.00002 * 12 11 10 15 15 C 1.52996 * 109.47465 * 185.00331 * 12 11 10 16 16 N 1.46499 * 109.47350 * 179.97438 * 15 12 11 17 17 C 1.36943 * 119.99723 * 179.97438 * 16 15 12 18 18 H 1.07990 * 120.00323 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99465 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00263 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99966 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46623 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46906 * 119.99476 * 21 19 17 24 24 H 1.48490 * 109.47301 * 240.00207 * 21 19 17 25 25 H 1.09003 * 109.46946 * 263.42607 * 1 2 3 26 26 H 1.09002 * 109.46716 * 23.42562 * 1 2 3 27 27 H 1.09001 * 109.47200 * 143.42593 * 1 2 3 28 28 H 1.08005 * 119.92994 * 359.97438 * 3 2 1 29 29 H 1.07996 * 119.85746 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.92315 * 180.26847 * 5 4 3 31 31 H 1.08001 * 120.07779 * 180.02562 * 6 5 4 32 32 H 0.96995 * 119.99366 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47214 * 300.00245 * 11 10 8 34 34 H 1.09008 * 109.47076 * 60.00333 * 11 10 8 35 35 H 0.96705 * 113.99718 * 60.00664 * 14 12 11 36 36 H 1.09000 * 109.47156 * 300.00287 * 15 12 11 37 37 H 1.09004 * 109.47093 * 59.99831 * 15 12 11 38 38 H 0.96997 * 120.00424 * 0.02562 * 16 15 12 39 39 H 0.97007 * 119.99693 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1957 0.0005 5 6 4.2813 0.0017 0.0005 6 6 3.6023 -1.1989 0.0005 7 6 2.2064 -1.2077 0.0005 8 6 1.4720 -2.4909 0.0017 9 8 0.2619 -2.4985 0.1164 10 7 2.1443 -3.6522 -0.1245 11 6 1.4166 -4.9237 -0.1228 12 6 2.4078 -6.0787 -0.2784 13 1 3.0092 -5.9232 -1.1742 14 8 3.2622 -6.1306 0.8659 15 6 1.6402 -7.3964 -0.4019 16 7 2.5893 -8.5023 -0.5515 17 6 2.1301 -9.7861 -0.6796 18 1 1.0683 -9.9832 -0.6707 19 6 3.0294 -10.8340 -0.8208 20 7 4.3235 -10.5938 -0.8311 21 14 2.4032 -12.5853 -0.9949 22 1 0.9187 -12.5865 -0.9524 23 1 2.8613 -13.1483 -2.2904 24 1 2.9314 -13.4129 0.1191 25 1 -0.3633 -0.1177 1.0209 26 1 -0.3633 0.9430 -0.4086 27 1 -0.3633 -0.8253 -0.6123 28 1 1.6585 2.1294 -0.0004 29 1 4.1183 2.1330 0.0010 30 1 5.3613 0.0100 0.0053 31 1 4.1493 -2.1301 0.0010 32 1 3.1099 -3.6461 -0.2156 33 1 0.8774 -5.0324 0.8182 34 1 0.7084 -4.9381 -0.9513 35 1 2.7937 -6.2673 1.7007 36 1 1.0388 -7.5519 0.4938 37 1 0.9885 -7.3568 -1.2747 38 1 3.5430 -8.3254 -0.5591 39 1 4.9519 -11.3261 -0.9302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753904306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:27 Heat of formation + Delta-G solvation = -78.332388 kcal Electronic energy + Delta-G solvation = -20708.139973 eV Core-core repulsion = 17421.698973 eV Total energy + Delta-G solvation = -3286.441000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42296 -39.58336 -38.74080 -36.12567 -35.51306 -33.50558 -33.23035 -32.37712 -30.41639 -28.08441 -26.99353 -24.96524 -24.05342 -22.85712 -22.31300 -21.41576 -19.31356 -18.86725 -17.75068 -17.25377 -16.89194 -16.51364 -16.41994 -16.15297 -15.81946 -15.64084 -15.33654 -14.90127 -14.54159 -14.36042 -14.10620 -14.03673 -13.79990 -13.26144 -13.06842 -12.97428 -12.90552 -12.79167 -12.65603 -12.13260 -12.01622 -11.95381 -11.82071 -11.09897 -10.99103 -10.65111 -10.26157 -9.89558 -9.64650 -9.02199 -7.95864 -5.25493 -0.12296 0.40324 1.47506 1.48226 1.58386 1.84997 2.05862 2.55461 2.86423 3.35136 3.44401 3.56472 3.69983 3.87381 3.91352 4.01268 4.16147 4.19340 4.38107 4.41617 4.51681 4.59959 4.68192 4.75036 4.82256 4.84537 4.92031 5.00956 5.17491 5.22068 5.36136 5.42088 5.47961 5.51092 5.60754 5.97395 6.25491 6.46401 6.77124 7.14353 7.32710 8.07650 8.31112 9.27523 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040775 B = 0.002828 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.524799 B = 9900.194910 C =10454.066467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.136 4.136 4 C -0.086 4.086 5 C -0.137 4.137 6 C -0.087 4.087 7 C -0.164 4.164 8 C 0.551 3.449 9 O -0.568 6.568 10 N -0.710 5.710 11 C 0.103 3.897 12 C 0.108 3.892 13 H 0.102 0.898 14 O -0.563 6.563 15 C 0.122 3.878 16 N -0.740 5.740 17 C -0.247 4.247 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.385 0.615 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.377 0.623 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 26.260 2.253 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 C -0.154 4.154 4 C -0.104 4.104 5 C -0.155 4.155 6 C -0.105 4.105 7 C -0.167 4.167 8 C 0.340 3.660 9 O -0.449 6.449 10 N -0.362 5.362 11 C -0.022 4.022 12 C 0.048 3.952 13 H 0.119 0.881 14 O -0.369 6.369 15 C -0.005 4.005 16 N -0.383 5.383 17 C -0.379 4.379 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.618 5.618 21 Si 0.804 3.196 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.249 0.751 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.210 0.790 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.578 26.184 1.876 26.378 hybrid contribution 0.089 -1.413 0.232 1.435 sum -2.489 24.771 2.107 24.985 Atomic orbital electron populations 1.20993 0.90443 1.03072 1.02799 1.20263 0.96985 0.92251 0.94975 1.21363 0.95025 0.97466 1.01548 1.21776 0.94017 0.99533 0.95052 1.21470 1.01660 0.91715 1.00669 1.21563 0.92203 1.00166 0.96597 1.19821 0.94566 0.92450 1.09822 1.18667 0.86875 0.84513 0.75897 1.90706 1.15070 1.87708 1.51443 1.45771 1.11673 1.05015 1.73722 1.21878 0.94712 0.82333 1.03237 1.22095 0.91406 0.91747 0.89937 0.88067 1.86550 1.37538 1.95253 1.17581 1.21393 0.92613 0.87500 0.99010 1.42422 1.05335 1.02388 1.88188 1.19674 0.92487 0.85060 1.40699 0.90579 1.25605 0.95544 1.02114 1.03558 1.69845 1.01371 1.31779 1.58818 0.85057 0.77906 0.79941 0.76733 1.19027 1.21971 1.21978 0.91532 0.90337 0.91070 0.83215 0.82506 0.82893 0.84384 0.75098 0.90746 0.90442 0.76606 0.95090 0.94828 0.79028 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.73 71.24 0.62 -1.81 16 2 C -0.04 -0.90 5.91 -19.61 -0.12 -1.01 16 3 C -0.14 -1.99 9.66 22.23 0.21 -1.78 16 4 C -0.09 -1.01 10.04 22.33 0.22 -0.79 16 5 C -0.14 -1.81 10.03 22.23 0.22 -1.59 16 6 C -0.09 -1.50 9.53 22.53 0.21 -1.28 16 7 C -0.16 -3.65 5.87 -20.09 -0.12 -3.77 16 8 C 0.55 14.70 7.70 86.79 0.67 15.37 16 9 O -0.57 -18.38 13.35 -3.88 -0.05 -18.43 16 10 N -0.71 -16.81 5.45 -465.98 -2.54 -19.35 16 11 C 0.10 2.64 5.31 86.38 0.46 3.10 16 12 C 0.11 3.21 3.09 30.59 0.09 3.31 16 13 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 14 O -0.56 -17.27 13.03 -148.98 -1.94 -19.22 16 15 C 0.12 4.63 5.92 86.38 0.51 5.14 16 16 N -0.74 -37.38 5.49 -343.46 -1.89 -39.27 16 17 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 18 H 0.08 4.08 7.83 -2.92 -0.02 4.05 16 19 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 20 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 21 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 1.20 8.04 -2.39 -0.02 1.18 16 27 H 0.07 1.85 5.86 -2.39 -0.01 1.84 16 28 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 30 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.14 1.98 6.45 -2.91 -0.02 1.96 16 32 H 0.41 8.36 6.55 -92.71 -0.61 7.76 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.39 9.84 9.05 -74.05 -0.67 9.17 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.38 20.60 7.54 -92.71 -0.70 19.90 16 39 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -71.82 331.20 -0.69 -72.51 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.89 Total: 36.90 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.30 Total: -2.02 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -4.15 Total: -117.99 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.99 Total: -37.64 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -71.82 -0.69 -72.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753904306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.820 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds