Wall clock time and date at job start Tue Mar 31 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40368 * 126.43993 * 2 1 4 4 C 1.36544 * 106.70957 * 179.97438 * 3 2 1 5 5 C 1.46655 * 125.98947 * 179.97438 * 4 3 2 6 6 O 1.21691 * 120.00001 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00073 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00107 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46960 * 174.42033 * 8 7 5 10 10 N 1.46496 * 115.55466 * 324.36731 * 9 8 7 11 11 C 1.36939 * 119.99805 * 295.00071 * 10 9 8 12 12 H 1.08001 * 120.00336 * 356.89341 * 11 10 9 13 13 C 1.38814 * 120.00249 * 176.89294 * 11 10 9 14 14 N 1.31621 * 119.99789 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00267 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47153 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47173 * 119.99616 * 15 13 11 18 18 H 1.48501 * 109.47164 * 239.99873 * 15 13 11 19 19 C 1.53009 * 117.49555 * 110.03808 * 9 8 7 20 20 C 1.53002 * 117.49757 * 178.69679 * 9 8 7 21 21 O 1.34923 * 108.02293 * 0.22229 * 4 3 2 22 22 C 1.33936 * 109.38131 * 359.62491 * 21 4 3 23 23 C 1.50694 * 125.61234 * 180.17084 * 22 21 4 24 24 H 1.09002 * 109.46945 * 89.98787 * 1 2 3 25 25 H 1.09000 * 109.47251 * 209.97922 * 1 2 3 26 26 H 1.08995 * 109.47739 * 329.98450 * 1 2 3 27 27 H 1.07997 * 126.64672 * 0.02562 * 3 2 1 28 28 H 0.96996 * 119.99685 * 359.97438 * 7 5 4 29 29 H 1.09003 * 109.46659 * 54.42052 * 8 7 5 30 30 H 1.09000 * 109.46738 * 294.42116 * 8 7 5 31 31 H 0.96996 * 120.00499 * 115.27216 * 10 9 8 32 32 H 0.96997 * 120.00046 * 179.97438 * 14 13 11 33 33 H 1.09002 * 117.49486 * 214.99945 * 19 9 8 34 34 H 1.08996 * 117.49682 * 0.02562 * 19 9 8 35 35 H 1.08998 * 117.49857 * 359.97180 * 20 9 8 36 36 H 1.08997 * 117.50123 * 144.97806 * 20 9 8 37 37 H 1.09005 * 109.47536 * 270.24457 * 23 22 21 38 38 H 1.09006 * 109.47561 * 30.24192 * 23 22 21 39 39 H 1.09000 * 109.47259 * 150.24149 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1292 0.0000 4 6 3.6260 0.6683 0.0006 5 6 4.8378 1.4943 0.0003 6 8 4.7470 2.7078 -0.0011 7 7 6.0521 0.9094 0.0004 8 6 7.2626 1.7345 -0.0005 9 6 8.4926 0.8356 0.1401 10 7 8.3225 -0.3381 1.0001 11 6 8.0918 -0.1773 2.3403 12 1 8.0850 0.8126 2.7722 13 6 7.8665 -1.2866 3.1438 14 7 7.8742 -2.4929 2.6175 15 14 7.5524 -1.0673 4.9721 16 1 7.5962 0.3776 5.3121 17 1 6.2157 -1.6163 5.3141 18 1 8.5961 -1.7887 5.7437 19 6 9.4054 0.6916 -1.0794 20 6 9.8657 1.5104 0.1294 21 8 3.5858 -0.6804 -0.0040 22 6 2.3097 -1.0870 0.0007 23 6 1.8456 -2.5207 0.0015 24 1 -0.3633 0.0002 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5140 27 1 2.0265 2.1625 0.0004 28 1 6.1244 -0.0579 0.0011 29 1 7.2262 2.4338 0.8349 30 1 7.3232 2.2896 -0.9366 31 1 8.3773 -1.2292 0.6209 32 1 7.7171 -3.2681 3.1790 33 1 9.8794 -0.2765 -1.2417 34 1 9.1299 1.2376 -1.9815 35 1 9.8928 2.5947 0.0217 36 1 10.6424 1.0813 0.7624 37 1 1.7337 -2.8670 -1.0260 38 1 2.5804 -3.1403 0.5157 39 1 0.8869 -2.5920 0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754510257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:07 Heat of formation + Delta-G solvation = -11.588329 kcal Electronic energy + Delta-G solvation = -21635.533393 eV Core-core repulsion = 18351.986632 eV Total energy + Delta-G solvation = -3283.546760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.74949 -40.62845 -38.97971 -35.64206 -35.09820 -34.93853 -32.98976 -31.64795 -29.71363 -28.72272 -26.52173 -25.93730 -23.36356 -23.08741 -22.17054 -20.94145 -20.36387 -19.16806 -18.83773 -17.60409 -17.45554 -16.78954 -16.39175 -16.14139 -15.78925 -15.45917 -15.02052 -14.73473 -14.58795 -14.10993 -14.08878 -13.87849 -13.64798 -13.61096 -13.59402 -12.98308 -12.96950 -12.88868 -12.44946 -12.27167 -12.18531 -11.99353 -11.78044 -11.43526 -10.97533 -10.74705 -10.68678 -10.08340 -9.34815 -9.06888 -7.98221 -5.26920 -0.00278 1.27971 1.40673 1.43027 1.50870 1.64832 2.08411 2.24619 2.50302 3.02590 3.37384 3.58561 3.63611 3.80316 3.85166 3.89464 4.14500 4.30248 4.38545 4.45703 4.63948 4.65486 4.70045 4.78291 4.81164 4.84182 4.90385 5.00841 5.07214 5.08562 5.10222 5.12813 5.34969 5.40921 5.54577 5.59169 5.90894 6.24293 6.48231 7.00208 7.31190 8.01538 8.26460 9.23894 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.006018 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.732111 B = 4651.400872 C = 5836.517868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.200 4.200 3 C -0.119 4.119 4 C -0.107 4.107 5 C 0.594 3.406 6 O -0.567 6.567 7 N -0.688 5.688 8 C 0.155 3.845 9 C 0.094 3.906 10 N -0.695 5.695 11 C -0.223 4.223 12 H 0.064 0.936 13 C -0.062 4.062 14 N -0.959 5.959 15 Si 0.956 3.044 16 H -0.275 1.275 17 H -0.296 1.296 18 H -0.290 1.290 19 C -0.157 4.157 20 C -0.182 4.182 21 O -0.176 6.176 22 C 0.009 3.991 23 C -0.078 4.078 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.165 0.835 28 H 0.409 0.591 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.379 0.621 32 H 0.251 0.749 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 2.391 -9.023 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.201 4.201 3 C -0.140 4.140 4 C -0.158 4.158 5 C 0.381 3.619 6 O -0.450 6.450 7 N -0.336 5.336 8 C 0.030 3.970 9 C 0.002 3.998 10 N -0.334 5.334 11 C -0.354 4.354 12 H 0.082 0.918 13 C -0.255 4.255 14 N -0.609 5.609 15 Si 0.786 3.214 16 H -0.200 1.200 17 H -0.223 1.223 18 H -0.217 1.217 19 C -0.194 4.194 20 C -0.222 4.222 21 O -0.073 6.073 22 C -0.043 4.043 23 C -0.134 4.134 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.183 0.817 28 H 0.246 0.754 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.212 0.788 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.476 3.104 -8.841 14.815 hybrid contribution 0.294 -0.647 1.239 1.429 sum -11.182 2.457 -7.602 13.742 Atomic orbital electron populations 1.20285 0.85651 1.03934 1.03415 1.20605 0.99282 0.90488 1.09760 1.22055 0.90211 1.01395 1.00339 1.21931 0.96366 0.80830 1.16690 1.16786 0.82046 0.86208 0.76857 1.90777 1.86773 1.13217 1.54217 1.45764 1.04816 1.11684 1.71322 1.21166 0.82563 0.92171 1.01150 1.20450 0.89933 0.92195 0.97254 1.41795 1.85038 1.02443 1.04124 1.19313 1.38562 0.92396 0.85158 0.91771 1.25315 1.03596 0.95305 1.01289 1.69768 1.58171 0.97479 1.35514 0.85336 0.76833 0.77306 0.81914 1.19992 1.22332 1.21746 1.23291 1.01911 1.01994 0.92243 1.23372 0.98137 0.99430 1.01247 1.84076 1.30571 1.21615 1.71039 1.23538 0.79856 0.99328 1.01582 1.20643 1.02801 0.84544 1.05363 0.89883 0.89589 0.90853 0.81695 0.75388 0.93065 0.89631 0.78778 0.93993 0.89154 0.86213 0.87280 0.90175 0.87559 0.90773 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.17 71.23 0.72 -0.48 16 2 C -0.20 -5.10 6.14 -20.06 -0.12 -5.23 16 3 C -0.12 -3.72 10.57 22.39 0.24 -3.49 16 4 C -0.11 -3.96 7.13 24.07 0.17 -3.79 16 5 C 0.59 24.17 7.79 86.44 0.67 24.84 16 6 O -0.57 -24.83 16.86 -4.32 -0.07 -24.90 16 7 N -0.69 -27.49 5.39 -467.10 -2.52 -30.01 16 8 C 0.16 5.77 5.69 86.38 0.49 6.26 16 9 C 0.09 3.54 2.46 3.61 0.01 3.55 16 10 N -0.70 -33.02 4.49 -303.34 -1.36 -34.38 16 11 C -0.22 -11.99 9.81 84.03 0.82 -11.16 16 12 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 13 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 14 N -0.96 -56.41 13.06 21.65 0.28 -56.13 16 15 Si 0.96 46.48 29.55 68.60 2.03 48.51 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 18 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 19 C -0.16 -4.69 10.11 30.62 0.31 -4.38 16 20 C -0.18 -5.92 10.18 30.62 0.31 -5.61 16 21 O -0.18 -6.37 10.40 -5.18 -0.05 -6.42 16 22 C 0.01 0.25 7.31 24.97 0.18 0.44 16 23 C -0.08 -1.39 10.21 71.23 0.73 -0.66 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 1.02 7.13 -2.39 -0.02 1.00 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 28 H 0.41 17.29 7.54 -92.71 -0.70 16.59 16 29 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 30 H 0.09 2.74 7.91 -2.39 -0.02 2.73 16 31 H 0.38 19.28 8.03 -92.71 -0.74 18.53 16 32 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.12 2.87 8.06 -2.39 -0.02 2.85 16 35 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.12 1.41 7.12 -2.39 -0.02 1.39 16 Total: -1.00 -67.83 339.24 2.94 -64.89 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.37 Total: 41.16 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.00 Total: -2.72 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -3.60 Total: -120.52 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.13 Total: -31.32 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -67.83 2.94 -64.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754510257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.303 kcal (2) G-P(sol) polarization free energy of solvation -67.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds