Wall clock time and date at job start Mon Mar 30 2020 23:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35245 * 126.39395 * 2 1 4 4 N 1.33451 * 107.83934 * 180.25846 * 3 2 1 5 5 C 1.31286 * 108.70745 * 359.97438 * 4 3 2 6 6 C 1.47454 * 125.71104 * 179.97438 * 5 4 3 7 7 O 1.21597 * 120.00655 * 172.88701 * 6 5 4 8 8 N 1.34785 * 119.99825 * 352.89663 * 6 5 4 9 9 C 1.46921 * 120.62756 * 3.76868 * 8 6 5 10 10 C 1.52765 * 109.00660 * 233.58634 * 9 8 6 11 11 C 1.53041 * 109.38163 * 305.58741 * 10 9 8 12 12 C 1.52996 * 109.45951 * 181.26110 * 11 10 9 13 13 C 1.50699 * 109.47375 * 64.93129 * 12 11 10 14 14 H 1.07998 * 120.00116 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00034 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99896 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00167 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47202 * 89.99592 * 17 15 13 19 19 H 1.48503 * 109.46921 * 209.99888 * 17 15 13 20 20 H 1.48498 * 109.46908 * 329.99331 * 17 15 13 21 21 C 1.53048 * 109.53812 * 61.24098 * 11 10 9 22 22 C 1.46924 * 120.63217 * 184.04644 * 8 6 5 23 23 O 1.34304 * 126.39557 * 180.30419 * 2 1 3 24 24 H 1.09001 * 109.47010 * 179.71254 * 1 2 3 25 25 H 1.08999 * 109.47236 * 299.71704 * 1 2 3 26 26 H 1.09004 * 109.46972 * 59.71687 * 1 2 3 27 27 H 1.08000 * 126.08004 * 0.23689 * 3 2 1 28 28 H 1.08997 * 109.59083 * 353.41535 * 9 8 6 29 29 H 1.09001 * 109.59068 * 113.84690 * 9 8 6 30 30 H 1.08997 * 109.56702 * 185.55149 * 10 9 8 31 31 H 1.09000 * 109.36212 * 65.49520 * 10 9 8 32 32 H 1.09005 * 109.46243 * 301.22080 * 11 10 9 33 33 H 1.09006 * 109.47499 * 184.93328 * 12 11 10 34 34 H 1.09004 * 109.47591 * 304.92909 * 12 11 10 35 35 H 0.97003 * 120.00589 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.49289 * 178.68488 * 21 11 10 37 37 H 1.08998 * 109.52054 * 58.60079 * 21 11 10 38 38 H 1.08991 * 109.58764 * 246.15589 * 22 8 6 39 39 H 1.09001 * 109.58504 * 6.43898 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3094 1.0887 0.0000 4 7 3.5746 0.6640 -0.0057 5 6 3.5781 -0.6488 -0.0087 6 6 4.7776 -1.5063 -0.0157 7 8 4.6653 -2.7103 0.1125 8 7 5.9988 -0.9555 -0.1640 9 6 6.1582 0.5032 -0.2370 10 6 6.9398 0.8556 -1.5014 11 6 8.2575 0.0774 -1.5174 12 6 9.0560 0.4526 -2.7673 13 6 9.4500 1.9054 -2.6944 14 1 9.1602 2.5013 -1.8416 15 6 10.1812 2.4734 -3.7159 16 7 10.5255 3.7411 -3.6520 17 14 10.6830 1.4425 -5.1907 18 1 9.6291 1.5244 -6.2336 19 1 11.9640 1.9550 -5.7400 20 1 10.8551 0.0286 -4.7707 21 6 7.9647 -1.4248 -1.5313 22 6 7.1953 -1.8027 -0.2616 23 8 2.3039 -1.0811 -0.0057 24 1 -0.3633 -1.0277 -0.0052 25 1 -0.3634 0.5094 0.8925 26 1 -0.3633 0.5182 -0.8875 27 1 1.9842 2.1185 0.0036 28 1 5.1771 0.9767 -0.2719 29 1 6.7053 0.8553 0.6374 30 1 7.1488 1.9252 -1.5151 31 1 6.3490 0.5886 -2.3777 32 1 8.8370 0.3261 -0.6282 33 1 9.9526 -0.1646 -2.8246 34 1 8.4433 0.2864 -3.6534 35 1 11.0397 4.1409 -4.3709 36 1 8.9032 -1.9780 -1.5662 37 1 7.3644 -1.6707 -2.4073 38 1 7.8287 -1.6425 0.6108 39 1 6.8983 -2.8503 -0.3101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259718607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:10 Heat of formation + Delta-G solvation = -5.982051 kcal Electronic energy + Delta-G solvation = -21693.729033 eV Core-core repulsion = 18410.425380 eV Total energy + Delta-G solvation = -3283.303654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.73637 -39.98934 -37.48497 -35.40687 -34.00446 -32.93179 -32.10993 -30.83804 -28.84569 -27.69486 -25.02757 -23.51804 -22.98894 -22.22782 -21.37609 -20.28038 -19.13556 -17.45174 -17.21859 -16.94035 -16.63886 -15.73294 -15.04796 -14.69749 -14.35662 -14.09560 -13.79314 -13.70170 -13.52888 -13.34968 -13.18446 -12.87968 -12.76476 -12.33713 -12.22633 -11.76554 -11.43517 -11.27967 -11.00009 -10.70939 -10.50641 -10.35567 -10.09808 -9.86224 -9.56322 -9.25549 -9.11113 -8.99787 -8.52065 -8.50001 -6.02865 -3.99976 0.65976 1.86478 2.00411 3.02718 3.18111 3.31485 3.39210 3.42854 3.81169 4.35128 4.46576 4.60277 4.79535 4.97438 5.01451 5.19452 5.30430 5.30899 5.39891 5.43063 5.58505 5.61645 5.65986 5.77165 5.89924 5.96849 6.24564 6.32335 6.33838 6.49056 6.71833 6.82228 6.89785 7.02633 7.14927 7.28897 7.38793 7.46106 7.81521 7.93556 8.55578 9.02223 9.60379 11.10389 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.004097 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.456545 B = 6833.294644 C = 7487.238923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.028 4.028 3 C -0.043 4.043 4 N -0.426 5.426 5 C 0.153 3.847 6 C 0.608 3.392 7 O -0.530 6.530 8 N -0.570 5.570 9 C 0.050 3.950 10 C -0.116 4.116 11 C -0.075 4.075 12 C -0.009 4.009 13 C -0.515 4.515 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.132 4.132 22 C 0.114 3.886 23 O -0.165 6.165 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.194 0.806 28 H 0.150 0.850 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.015 0.985 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.063 -7.202 8.086 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.184 4.184 4 N -0.159 5.159 5 C -0.053 4.053 6 C 0.392 3.608 7 O -0.406 6.406 8 N -0.302 5.302 9 C -0.072 4.072 10 C -0.154 4.154 11 C -0.094 4.094 12 C -0.046 4.046 13 C -0.553 4.553 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.170 4.170 22 C -0.007 4.007 23 O -0.048 6.048 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.211 0.789 28 H 0.166 0.834 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.453 -7.465 8.061 20.624 hybrid contribution -0.160 -0.565 -0.943 1.111 sum -17.614 -8.030 7.118 20.625 Atomic orbital electron populations 1.20379 0.83265 1.04804 1.04352 1.24032 0.95464 0.84468 1.04377 1.23400 0.87594 1.00863 1.06593 1.70047 1.22279 1.08220 1.15337 1.25524 0.84412 0.89352 1.05982 1.16078 0.80635 0.85301 0.78810 1.90845 1.85410 1.13414 1.50929 1.47863 1.04422 1.09495 1.68432 1.23271 1.06902 0.77591 0.99390 1.21789 0.95517 1.02408 0.95661 1.21065 0.96050 0.91467 1.00825 1.19618 0.94703 0.97522 0.92799 1.21142 1.33700 0.93718 1.06700 0.90786 1.25023 0.95591 0.94742 0.98159 1.69910 1.39226 1.11794 1.33439 0.86815 0.78040 0.81291 0.83343 1.20437 1.21512 1.19070 1.22085 0.99728 0.98803 0.96429 1.21829 0.84587 0.95014 0.99235 1.84462 1.16729 1.35939 1.67697 0.90034 0.88773 0.88724 0.78900 0.83423 0.91450 0.89071 0.92708 0.91611 0.96634 0.97164 0.92831 0.90701 0.91958 0.90788 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.44 36.00 0.38 0.03 16 2 C -0.03 -0.28 7.40 -35.37 -0.26 -0.54 16 3 C -0.04 -0.44 11.80 -17.91 -0.21 -0.65 16 4 N -0.43 -5.79 7.53 -11.79 -0.09 -5.88 16 5 C 0.15 2.27 7.88 -14.03 -0.11 2.16 16 6 C 0.61 9.96 7.69 -12.50 -0.10 9.86 16 7 O -0.53 -9.78 16.53 0.15 0.00 -9.78 16 8 N -0.57 -8.84 2.98 -174.29 -0.52 -9.36 16 9 C 0.05 0.77 6.27 -3.93 -0.02 0.74 16 10 C -0.12 -2.08 5.17 -26.83 -0.14 -2.22 16 11 C -0.08 -1.42 2.10 -90.58 -0.19 -1.61 16 12 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 13 C -0.51 -14.18 8.94 -34.44 -0.31 -14.48 16 14 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 17 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 21 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 22 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 23 O -0.17 -2.26 10.79 -0.10 0.00 -2.26 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.15 2.23 3.68 -81.49 -0.30 1.93 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.81 6.91 -51.93 -0.36 1.45 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.27 7.02 -51.93 -0.36 0.90 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -33.10 317.81 -6.61 -39.70 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.57 Total: -1.58 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.33 Total: -5.84 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.17 Total: -42.04 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.00 Total: -12.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.10 -6.61 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259718607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.722 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds