Wall clock time and date at job start Mon Mar 30 2020 23:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34182 * 125.43813 * 2 1 4 4 C 1.47028 * 105.95442 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.19018 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99945 * 180.02562 * 5 4 3 8 8 C 1.46504 * 120.00276 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46908 * 179.97438 * 8 7 5 10 10 H 1.08994 * 112.85258 * 316.19076 * 9 8 7 11 11 C 1.53777 * 113.68937 * 87.46603 * 9 8 7 12 12 C 1.53785 * 87.08241 * 139.98701 * 11 9 8 13 13 H 1.09002 * 113.61570 * 220.01842 * 12 11 9 14 14 N 1.46500 * 113.68813 * 89.12417 * 12 11 9 15 15 C 1.36936 * 119.99618 * 105.94148 * 14 12 11 16 16 H 1.07990 * 120.00427 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99593 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99988 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46812 * 90.00369 * 19 17 15 21 21 H 1.48502 * 109.47126 * 209.99830 * 19 17 15 22 22 H 1.48501 * 109.47366 * 330.00666 * 19 17 15 23 23 C 1.53781 * 87.08241 * 334.56547 * 12 11 9 24 24 C 1.36409 * 105.61209 * 0.26366 * 4 3 2 25 25 O 1.33652 * 108.40239 * 359.57609 * 24 4 3 26 26 H 1.09008 * 109.46948 * 89.99917 * 1 2 3 27 27 H 1.08999 * 109.47294 * 209.99611 * 1 2 3 28 28 H 1.09001 * 109.47564 * 330.00139 * 1 2 3 29 29 H 1.08005 * 127.02532 * 0.02562 * 3 2 1 30 30 H 0.97005 * 119.99889 * 359.97438 * 7 5 4 31 31 H 1.08993 * 109.46882 * 59.99609 * 8 7 5 32 32 H 1.09002 * 109.46663 * 300.00151 * 8 7 5 33 33 H 1.08999 * 113.61947 * 25.44127 * 11 9 8 34 34 H 1.08997 * 113.61348 * 254.53341 * 11 9 8 35 35 H 0.96998 * 120.00149 * 285.93056 * 14 12 11 36 36 H 0.96996 * 119.99509 * 179.97438 * 18 17 15 37 37 H 1.09000 * 113.61578 * 139.97748 * 23 12 11 38 38 H 1.08997 * 113.61673 * 270.88717 * 23 12 11 39 39 H 1.08008 * 125.79986 * 179.73706 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1067 0.8075 0.0005 8 6 7.3309 1.6124 0.0008 9 6 8.5495 0.6872 0.0015 10 1 8.4480 -0.1459 0.6970 11 6 9.0045 0.2636 -1.4050 12 6 10.4483 0.4362 -0.9043 13 1 11.1131 0.8928 -1.6376 14 7 11.0112 -0.7749 -0.3023 15 6 11.9459 -1.5075 -0.9841 16 1 12.2678 -1.1927 -1.9657 17 6 12.4798 -2.6548 -0.4134 18 7 13.3779 -3.3592 -1.0690 19 14 11.9237 -3.1990 1.2848 20 1 10.7552 -4.1064 1.1558 21 1 13.0337 -3.9149 1.9634 22 1 11.5398 -2.0084 2.0851 23 6 9.8889 1.4328 0.1247 24 6 3.5789 -0.7581 -0.0051 25 8 2.2852 -1.0935 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9595 2.1231 0.0004 30 1 6.1630 -0.1609 0.0012 31 1 7.3520 2.2412 0.8907 32 1 7.3523 2.2414 -0.8892 33 1 8.7256 0.9711 -2.1858 34 1 8.7492 -0.7662 -1.6547 35 1 10.7220 -1.0578 0.5793 36 1 13.7512 -4.1607 -0.6700 37 1 10.3475 1.3469 1.1098 38 1 9.8517 2.4600 -0.2379 39 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086347399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:29 Heat of formation + Delta-G solvation = 6.587522 kcal Electronic energy + Delta-G solvation = -20621.278077 eV Core-core repulsion = 17338.519481 eV Total energy + Delta-G solvation = -3282.758596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.85015 -39.69935 -38.56401 -34.79693 -33.43539 -33.28154 -32.29644 -30.67786 -28.01568 -26.73187 -25.21948 -24.11783 -23.07160 -21.73207 -21.37080 -19.97819 -18.60733 -17.99582 -17.64571 -16.62764 -16.35646 -16.01785 -15.33454 -14.97098 -14.63385 -14.42416 -13.78583 -13.59806 -13.53137 -13.43538 -13.37770 -13.07260 -12.83722 -12.54155 -12.17179 -12.06399 -11.59762 -11.39156 -10.96124 -10.55674 -10.40991 -10.19463 -10.04795 -9.97287 -9.69832 -9.57181 -9.13294 -8.95362 -8.87272 -7.34464 -5.83524 -3.19880 1.08704 1.75189 2.50470 3.05685 3.23642 3.31180 3.33517 3.39974 4.21072 4.40226 4.52121 4.64964 4.85400 4.89928 4.94479 5.02115 5.04361 5.21031 5.27046 5.34901 5.40656 5.45166 5.47415 5.66395 5.71291 5.83234 5.89248 6.04280 6.09365 6.19799 6.29071 6.45319 6.58323 6.68961 6.70200 6.85371 7.40185 7.94466 8.11432 8.36221 9.13867 9.86006 10.05202 11.34599 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003238 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.196572 B = 8645.536557 C = 9430.297724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.017 4.017 3 C -0.164 4.164 4 C -0.230 4.230 5 C 0.584 3.416 6 O -0.541 6.541 7 N -0.721 5.721 8 C 0.132 3.868 9 C -0.124 4.124 10 H 0.090 0.910 11 C -0.167 4.167 12 C 0.172 3.828 13 H 0.071 0.929 14 N -0.730 5.730 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.148 4.148 24 C 0.020 3.980 25 O -0.173 6.173 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.907 7.015 3.170 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.183 4.183 4 C -0.235 4.235 5 C 0.371 3.629 6 O -0.419 6.419 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.143 4.143 10 H 0.108 0.892 11 C -0.207 4.207 12 C 0.061 3.939 13 H 0.089 0.911 14 N -0.370 5.370 15 C -0.377 4.377 16 H 0.110 0.890 17 C -0.191 4.191 18 N -0.579 5.579 19 Si 0.714 3.286 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.187 4.187 24 C -0.050 4.050 25 O -0.068 6.068 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.852 7.507 3.002 25.185 hybrid contribution -0.120 -0.896 1.240 1.535 sum -23.973 6.611 4.243 25.227 Atomic orbital electron populations 1.20332 0.84632 1.04252 1.03764 1.22339 0.94192 0.83634 1.06414 1.22492 0.89985 0.99704 1.06135 1.21543 0.94788 0.93301 1.13855 1.17284 0.82271 0.87084 0.76247 1.90777 1.87223 1.13685 1.50225 1.45914 1.05615 1.10494 1.75208 1.21494 0.81900 0.93589 1.02091 1.22764 0.93011 0.98564 0.99943 0.89219 1.23860 1.01024 1.01388 0.94469 1.21002 0.91882 0.87208 0.93838 0.91136 1.42513 1.48915 1.26815 1.18792 1.19112 1.13927 1.03658 1.00979 0.89016 1.24691 0.98724 0.97648 0.98004 1.69698 1.31778 1.18377 1.38036 0.86562 0.78071 0.78404 0.85554 1.21065 1.21633 1.20317 1.23449 0.94961 0.99054 1.01271 1.24469 0.84318 0.95459 1.00752 1.83732 1.16469 1.35530 1.71117 0.89897 0.90360 0.89157 0.82387 0.76688 0.91614 0.91197 0.90880 0.91283 0.80530 0.92962 0.91403 0.89915 0.77082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.40 36.00 0.37 0.01 16 2 C -0.02 -0.15 7.28 -35.74 -0.26 -0.41 16 3 C -0.16 -1.74 10.90 -37.45 -0.41 -2.15 16 4 C -0.23 -2.65 6.31 -103.28 -0.65 -3.30 16 5 C 0.58 7.95 7.81 -12.54 -0.10 7.85 16 6 O -0.54 -9.32 16.98 5.27 0.09 -9.23 16 7 N -0.72 -8.41 5.55 -61.40 -0.34 -8.75 16 8 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 9 C -0.12 -1.67 3.64 -89.80 -0.33 -1.99 16 10 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.17 -2.54 7.44 -25.92 -0.19 -2.74 16 12 C 0.17 3.13 4.55 -67.12 -0.31 2.82 16 13 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 14 N -0.73 -16.54 5.12 -52.63 -0.27 -16.81 16 15 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 19 Si 0.88 21.47 27.73 -169.99 -4.71 16.75 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 23 C -0.15 -2.15 7.38 -25.91 -0.19 -2.34 16 24 C 0.02 0.18 11.61 30.07 0.35 0.53 16 25 O -0.17 -1.67 10.52 7.65 0.08 -1.59 16 26 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.16 1.56 8.06 -52.48 -0.42 1.13 16 30 H 0.40 3.72 7.44 -40.82 -0.30 3.42 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 33 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.36 8.01 5.76 -40.82 -0.24 7.78 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.21 1.16 7.47 -52.48 -0.39 0.77 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -34.19 333.47 -6.91 -41.09 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.56 Total: 8.47 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.99 Total: -6.97 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.17 Total: -53.55 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.17 Total: -10.82 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.19 -6.91 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086347399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.681 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds