Wall clock time and date at job start Mon Mar 30 2020 23:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34182 * 125.43813 * 2 1 4 4 C 1.47028 * 105.95442 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.19018 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99945 * 180.02562 * 5 4 3 8 8 C 1.46504 * 120.00276 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46908 * 179.97438 * 8 7 5 10 10 H 1.08994 * 112.85258 * 316.19076 * 9 8 7 11 11 C 1.53777 * 113.68937 * 87.46603 * 9 8 7 12 12 C 1.53785 * 87.08241 * 139.98701 * 11 9 8 13 13 H 1.09002 * 113.61570 * 220.01842 * 12 11 9 14 14 N 1.46500 * 113.68813 * 89.12417 * 12 11 9 15 15 C 1.36936 * 119.99618 * 105.94148 * 14 12 11 16 16 H 1.07990 * 120.00427 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31621 * 119.99593 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99988 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46812 * 90.00369 * 19 17 15 21 21 H 1.48502 * 109.47126 * 209.99830 * 19 17 15 22 22 H 1.48501 * 109.47366 * 330.00666 * 19 17 15 23 23 C 1.53781 * 87.08241 * 334.56547 * 12 11 9 24 24 C 1.36409 * 105.61209 * 0.26366 * 4 3 2 25 25 O 1.33652 * 108.40239 * 359.57609 * 24 4 3 26 26 H 1.09008 * 109.46948 * 89.99917 * 1 2 3 27 27 H 1.08999 * 109.47294 * 209.99611 * 1 2 3 28 28 H 1.09001 * 109.47564 * 330.00139 * 1 2 3 29 29 H 1.08005 * 127.02532 * 0.02562 * 3 2 1 30 30 H 0.97005 * 119.99889 * 359.97438 * 7 5 4 31 31 H 1.08993 * 109.46882 * 59.99609 * 8 7 5 32 32 H 1.09002 * 109.46663 * 300.00151 * 8 7 5 33 33 H 1.08999 * 113.61947 * 25.44127 * 11 9 8 34 34 H 1.08997 * 113.61348 * 254.53341 * 11 9 8 35 35 H 0.96998 * 120.00149 * 285.93056 * 14 12 11 36 36 H 0.96996 * 119.99509 * 179.97438 * 18 17 15 37 37 H 1.09000 * 113.61578 * 139.97748 * 23 12 11 38 38 H 1.08997 * 113.61673 * 270.88717 * 23 12 11 39 39 H 1.08008 * 125.79986 * 179.73706 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1067 0.8075 0.0005 8 6 7.3309 1.6124 0.0008 9 6 8.5495 0.6872 0.0015 10 1 8.4480 -0.1459 0.6970 11 6 9.0045 0.2636 -1.4050 12 6 10.4483 0.4362 -0.9043 13 1 11.1131 0.8928 -1.6376 14 7 11.0112 -0.7749 -0.3023 15 6 11.9459 -1.5075 -0.9841 16 1 12.2678 -1.1927 -1.9657 17 6 12.4798 -2.6548 -0.4134 18 7 13.3779 -3.3592 -1.0690 19 14 11.9237 -3.1990 1.2848 20 1 10.7552 -4.1064 1.1558 21 1 13.0337 -3.9149 1.9634 22 1 11.5398 -2.0084 2.0851 23 6 9.8889 1.4328 0.1247 24 6 3.5789 -0.7581 -0.0051 25 8 2.2852 -1.0935 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9595 2.1231 0.0004 30 1 6.1630 -0.1609 0.0012 31 1 7.3520 2.2412 0.8907 32 1 7.3523 2.2414 -0.8892 33 1 8.7256 0.9711 -2.1858 34 1 8.7492 -0.7662 -1.6547 35 1 10.7220 -1.0578 0.5793 36 1 13.7512 -4.1607 -0.6700 37 1 10.3475 1.3469 1.1098 38 1 9.8517 2.4600 -0.2379 39 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086347399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:28 Heat of formation + Delta-G solvation = -17.444761 kcal Electronic energy + Delta-G solvation = -20622.320195 eV Core-core repulsion = 17338.519481 eV Total energy + Delta-G solvation = -3283.800714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.57266 -40.81239 -39.81831 -36.10756 -35.03173 -34.09296 -33.09724 -32.50612 -29.12847 -27.41783 -26.46264 -25.60992 -24.44108 -22.99705 -22.13764 -20.96800 -20.02069 -19.53511 -18.73687 -17.35417 -17.27343 -17.09164 -16.58291 -16.36989 -15.99724 -15.59836 -15.12414 -14.90592 -14.64846 -14.36424 -14.09396 -13.99480 -13.81496 -13.76384 -13.35098 -13.10514 -13.00717 -12.71050 -12.65554 -12.24180 -11.89333 -11.66934 -11.55390 -11.20791 -10.94614 -10.87692 -10.83593 -10.13241 -9.56393 -9.29154 -8.02114 -5.35940 0.30931 1.00751 1.38327 1.42309 1.49887 1.86220 2.12892 2.28670 2.48928 3.28289 3.51411 3.56252 3.64088 3.73148 3.80497 4.00649 4.03457 4.26942 4.36570 4.39728 4.52050 4.69893 4.72402 4.73870 4.78530 4.87503 4.93645 4.97522 5.08621 5.09236 5.24167 5.32022 5.38400 5.46807 5.54431 5.81488 5.98624 6.23203 6.48659 7.08511 7.14317 7.85170 8.04109 9.19451 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003238 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.196572 B = 8645.536557 C = 9430.297724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.010 4.010 3 C -0.193 4.193 4 C -0.263 4.263 5 C 0.584 3.416 6 O -0.586 6.586 7 N -0.711 5.711 8 C 0.139 3.861 9 C -0.104 4.104 10 H 0.094 0.906 11 C -0.155 4.155 12 C 0.145 3.855 13 H 0.055 0.945 14 N -0.733 5.733 15 C -0.232 4.232 16 H 0.055 0.945 17 C -0.066 4.066 18 N -0.985 5.985 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.299 1.299 22 H -0.250 1.250 23 C -0.133 4.133 24 C 0.040 3.960 25 O -0.178 6.178 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.156 0.844 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.367 0.633 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.270 6.918 4.681 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.213 4.213 4 C -0.268 4.268 5 C 0.373 3.627 6 O -0.468 6.468 7 N -0.362 5.362 8 C 0.016 3.984 9 C -0.123 4.123 10 H 0.112 0.888 11 C -0.195 4.195 12 C 0.036 3.964 13 H 0.074 0.926 14 N -0.375 5.375 15 C -0.363 4.363 16 H 0.073 0.927 17 C -0.258 4.258 18 N -0.635 5.635 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.226 1.226 22 H -0.175 1.175 23 C -0.172 4.172 24 C -0.030 4.030 25 O -0.073 6.073 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -26.262 7.438 4.513 27.666 hybrid contribution 0.610 -0.806 0.645 1.199 sum -25.652 6.631 5.158 26.993 Atomic orbital electron populations 1.20534 0.81960 1.05525 1.04984 1.22946 0.95609 0.82822 1.04508 1.22645 0.90281 1.00337 1.07987 1.21515 0.94296 0.94384 1.16563 1.17569 0.83153 0.86685 0.75322 1.90746 1.87861 1.15600 1.52599 1.45799 1.04905 1.11151 1.74354 1.21351 0.81697 0.93317 1.02053 1.22589 0.92883 0.98450 0.98378 0.88771 1.23709 0.98346 1.01220 0.96234 1.21334 0.92974 0.86779 0.95348 0.92642 1.42421 1.48418 1.27794 1.18876 1.19057 1.13886 1.03652 0.99737 0.92667 1.25548 0.99379 0.98089 1.02749 1.69893 1.34039 1.19233 1.40384 0.85382 0.77372 0.78673 0.80173 1.20016 1.22611 1.17465 1.23354 0.94625 0.99299 0.99950 1.25048 0.84883 0.95015 0.98057 1.83774 1.16792 1.35856 1.70903 0.88585 0.89160 0.87800 0.82670 0.75151 0.91517 0.91515 0.89232 0.92573 0.79899 0.93353 0.91391 0.87607 0.73761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.40 71.23 0.74 0.18 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.19 -3.97 10.90 23.65 0.26 -3.71 16 4 C -0.26 -5.73 6.31 -18.99 -0.12 -5.85 16 5 C 0.58 15.26 7.81 86.65 0.68 15.94 16 6 O -0.59 -20.13 16.98 -4.07 -0.07 -20.20 16 7 N -0.71 -14.95 5.55 -466.42 -2.59 -17.53 16 8 C 0.14 3.12 5.51 86.38 0.48 3.60 16 9 C -0.10 -2.49 3.64 -10.27 -0.04 -2.53 16 10 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 11 C -0.15 -4.41 7.44 31.12 0.23 -4.18 16 12 C 0.15 5.09 4.55 45.52 0.21 5.30 16 13 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 14 N -0.73 -32.43 5.12 -320.44 -1.64 -34.07 16 15 C -0.23 -12.93 10.45 84.04 0.88 -12.05 16 16 H 0.06 3.40 8.06 -2.92 -0.02 3.38 16 17 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 18 N -0.99 -62.50 13.97 21.66 0.30 -62.19 16 19 Si 0.96 43.94 27.73 68.60 1.90 45.84 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 23 C -0.13 -3.51 7.38 31.12 0.23 -3.28 16 24 C 0.04 0.62 11.61 67.39 0.78 1.41 16 25 O -0.18 -3.00 10.52 4.46 0.05 -2.96 16 26 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.41 6.41 7.44 -92.70 -0.69 5.72 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 33 H 0.09 2.28 7.90 -2.39 -0.02 2.26 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.37 15.35 5.76 -92.71 -0.53 14.82 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 39 H 0.25 1.76 7.47 -2.91 -0.02 1.74 16 Total: -1.00 -76.19 333.47 2.71 -73.48 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.21 Total: 26.15 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 4.97 Total: -8.53 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.92 Total: -113.80 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.02 Total: -23.15 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -76.19 2.71 -73.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086347399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.035 kcal (2) G-P(sol) polarization free energy of solvation -76.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds