Wall clock time and date at job start Mon Mar 30 2020 23:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47091 * 2 1 4 4 C 1.50703 * 109.46995 * 240.00546 * 2 1 3 5 5 H 1.07993 * 120.00322 * 239.99883 * 4 2 1 6 6 C 1.37879 * 119.99896 * 59.99778 * 4 2 1 7 7 N 1.31513 * 120.00106 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99988 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47375 * 89.99789 * 8 6 4 10 10 H 1.48500 * 109.47037 * 209.99990 * 8 6 4 11 11 H 1.48502 * 109.46853 * 329.99687 * 8 6 4 12 12 C 1.52996 * 109.47242 * 120.00521 * 2 1 3 13 13 N 1.46497 * 109.47060 * 299.99697 * 12 2 1 14 14 C 1.34774 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21514 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.48152 * 119.99920 * 180.02562 * 14 13 12 17 17 C 1.39831 * 120.92267 * 359.97438 * 16 14 13 18 18 C 1.38132 * 119.00202 * 179.97438 * 17 16 14 19 19 N 1.31822 * 120.89559 * 359.97438 * 18 17 16 20 20 C 1.31795 * 122.05253 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.55313 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47171 * 180.02562 * 21 20 19 23 23 C 1.38165 * 120.89354 * 0.27364 * 20 19 18 24 24 H 1.09000 * 109.47164 * 299.99501 * 1 2 3 25 25 H 1.08997 * 109.47266 * 59.99520 * 1 2 3 26 26 H 1.08990 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47458 * 300.00363 * 3 2 1 29 29 H 1.09008 * 109.46954 * 60.00400 * 3 2 1 30 30 H 0.97003 * 119.99845 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46539 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.47201 * 60.00247 * 12 2 1 33 33 H 0.96995 * 120.00046 * 359.97438 * 13 12 2 34 34 H 1.07995 * 120.49882 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.54792 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47152 * 60.00024 * 21 20 19 37 37 H 1.09001 * 109.46980 * 300.00124 * 21 20 19 38 38 H 0.96701 * 113.99881 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.50251 * 179.70291 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 1.3426 -2.1613 -4.4121 10 1 2.4863 -0.1409 -5.1124 11 1 3.6292 -1.7579 -3.7125 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8778 -0.4911 3.6694 15 8 2.5772 -1.4785 3.7808 16 6 1.3836 0.2069 4.8791 17 6 0.5782 1.3451 4.7734 18 6 0.1390 1.9643 5.9274 19 7 0.4690 1.4959 7.1145 20 6 1.2257 0.4265 7.2588 21 6 1.5688 -0.0599 8.6433 22 8 2.3930 -1.2234 8.5488 23 6 1.7136 -0.2511 6.1581 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7088 1.1617 -3.4843 31 1 3.1301 -0.7217 1.2488 32 1 1.6767 -1.7490 1.2490 33 1 0.9945 0.7581 2.3564 34 1 0.3036 1.7341 3.8040 35 1 -0.4838 2.8438 5.8559 36 1 0.6523 -0.3061 9.1795 37 1 2.1052 0.7222 9.1806 38 1 2.6528 -1.5920 9.4042 39 1 2.3371 -1.1240 6.2837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638757688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:24 Heat of formation + Delta-G solvation = -55.650234 kcal Electronic energy + Delta-G solvation = -21270.050015 eV Core-core repulsion = 17984.592587 eV Total energy + Delta-G solvation = -3285.457428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66823 -38.98784 -37.05219 -36.42323 -33.60645 -32.68050 -31.76968 -30.79156 -26.91730 -26.12006 -25.77914 -25.27242 -23.58722 -22.72112 -20.17686 -18.94613 -17.89239 -17.83186 -16.20322 -15.91244 -15.58246 -15.55568 -15.32056 -14.83624 -14.81808 -14.55850 -14.10025 -13.56301 -13.35939 -12.96394 -12.79750 -12.31796 -12.16152 -11.72586 -11.44836 -11.23854 -10.90620 -10.72439 -10.66935 -10.44131 -10.26181 -10.05522 -9.89024 -9.68941 -9.59290 -9.30391 -9.10425 -8.83895 -8.53515 -8.37822 -6.05605 -4.15778 0.67190 0.95954 3.03898 3.26683 3.33738 3.36861 3.46989 3.50615 3.79843 4.37290 4.48979 4.57426 4.78943 4.86705 4.99122 5.10599 5.12573 5.21423 5.35191 5.66922 5.80932 6.01353 6.17535 6.26168 6.43113 6.48052 6.69535 6.76072 6.87271 6.91654 6.96485 7.28055 7.29812 7.50620 7.65694 7.70884 7.91203 7.96189 8.09374 8.33432 8.52589 8.84737 9.50323 10.95925 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.003494 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.629188 B = 8011.008598 C = 8552.275168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.545 3.455 15 O -0.538 6.538 16 C -0.080 4.080 17 C -0.143 4.143 18 C 0.099 3.901 19 N -0.472 5.472 20 C 0.111 3.889 21 C 0.132 3.868 22 O -0.567 6.567 23 C -0.093 4.093 24 H 0.005 0.995 25 H 0.087 0.913 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.398 0.602 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.388 0.612 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 2.744 18.339 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.356 5.356 14 C 0.330 3.670 15 O -0.416 6.416 16 C -0.092 4.092 17 C -0.164 4.164 18 C -0.058 4.058 19 N -0.183 5.183 20 C -0.027 4.027 21 C 0.054 3.946 22 O -0.373 6.373 23 C -0.114 4.114 24 H 0.024 0.976 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.235 0.765 34 H 0.160 0.840 35 H 0.182 0.818 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.875 2.666 18.317 18.605 hybrid contribution 0.325 -0.480 -1.151 1.289 sum -1.549 2.186 17.166 17.374 Atomic orbital electron populations 1.21841 0.97702 0.99290 1.00081 1.18370 0.92841 0.92800 0.90491 1.21843 0.98697 0.98285 1.00081 1.20975 1.31599 1.12157 0.89822 0.92354 1.24878 0.94827 0.94892 0.98878 1.69797 1.36661 1.22694 1.23296 0.86556 0.79350 0.79384 0.82508 1.20686 1.21249 1.19868 1.21822 0.98411 0.95941 0.83038 1.46254 1.51998 1.31580 1.05792 1.18170 0.81159 0.84393 0.83307 1.90756 1.38056 1.26050 1.86739 1.20646 0.97812 0.95862 0.94846 1.22445 0.97418 0.95438 1.01073 1.22623 0.97560 0.99053 0.86569 1.67063 1.11701 1.11629 1.27948 1.20827 0.94718 0.91942 0.95201 1.20529 0.94599 0.87751 0.91731 1.86453 1.71040 1.44435 1.35362 1.22069 0.98114 1.00606 0.90568 0.97610 0.89469 0.95334 0.95332 0.89457 0.97620 0.92959 0.92328 0.92334 0.76547 0.84029 0.81798 0.91178 0.91187 0.76389 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.31 9.35 55.43 0.52 -22.80 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.13 2.75 4.50 -4.05 -0.02 2.73 16 13 N -0.71 -12.66 4.92 -61.15 -0.30 -12.96 16 14 C 0.54 9.93 7.80 -12.19 -0.10 9.83 16 15 O -0.54 -11.61 16.45 5.35 0.09 -11.52 16 16 C -0.08 -1.21 5.91 -104.65 -0.62 -1.83 16 17 C -0.14 -1.74 9.62 -39.02 -0.38 -2.11 16 18 C 0.10 1.09 11.17 -17.59 -0.20 0.89 16 19 N -0.47 -5.80 10.25 -9.52 -0.10 -5.89 16 20 C 0.11 1.38 6.78 -82.63 -0.56 0.82 16 21 C 0.13 1.18 7.59 36.01 0.27 1.45 16 22 O -0.57 -5.12 12.11 -35.23 -0.43 -5.54 16 23 C -0.09 -1.35 8.98 -39.02 -0.35 -1.70 16 24 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.00 0.09 6.86 -51.92 -0.36 -0.26 16 30 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.40 6.33 4.31 -40.82 -0.18 6.15 16 34 H 0.14 1.46 6.54 -52.49 -0.34 1.11 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.39 1.40 9.12 45.56 0.42 1.82 16 39 H 0.16 2.43 6.69 -52.48 -0.35 2.08 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -30.86 321.56 -6.48 -37.34 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.30 Total: 6.71 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.79 Total: -5.72 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.12 Total: -41.65 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.34 Total: -17.06 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.86 -6.48 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638757688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.309 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds