Wall clock time and date at job start Mon Mar 30 2020 23:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47091 * 2 1 4 4 C 1.50703 * 109.46995 * 240.00546 * 2 1 3 5 5 H 1.07993 * 120.00322 * 239.99883 * 4 2 1 6 6 C 1.37879 * 119.99896 * 59.99778 * 4 2 1 7 7 N 1.31513 * 120.00106 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99988 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47375 * 89.99789 * 8 6 4 10 10 H 1.48500 * 109.47037 * 209.99990 * 8 6 4 11 11 H 1.48502 * 109.46853 * 329.99687 * 8 6 4 12 12 C 1.52996 * 109.47242 * 120.00521 * 2 1 3 13 13 N 1.46497 * 109.47060 * 299.99697 * 12 2 1 14 14 C 1.34774 * 119.99864 * 180.02562 * 13 12 2 15 15 O 1.21514 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.48152 * 119.99920 * 180.02562 * 14 13 12 17 17 C 1.39831 * 120.92267 * 359.97438 * 16 14 13 18 18 C 1.38132 * 119.00202 * 179.97438 * 17 16 14 19 19 N 1.31822 * 120.89559 * 359.97438 * 18 17 16 20 20 C 1.31795 * 122.05253 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.55313 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47171 * 180.02562 * 21 20 19 23 23 C 1.38165 * 120.89354 * 0.27364 * 20 19 18 24 24 H 1.09000 * 109.47164 * 299.99501 * 1 2 3 25 25 H 1.08997 * 109.47266 * 59.99520 * 1 2 3 26 26 H 1.08990 * 109.47201 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47458 * 300.00363 * 3 2 1 29 29 H 1.09008 * 109.46954 * 60.00400 * 3 2 1 30 30 H 0.97003 * 119.99845 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46539 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.47201 * 60.00247 * 12 2 1 33 33 H 0.96995 * 120.00046 * 359.97438 * 13 12 2 34 34 H 1.07995 * 120.49882 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.54792 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47152 * 60.00024 * 21 20 19 37 37 H 1.09001 * 109.46980 * 300.00124 * 21 20 19 38 38 H 0.96701 * 113.99881 * 180.02562 * 22 21 20 39 39 H 1.08003 * 120.50251 * 179.70291 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 1.3426 -2.1613 -4.4121 10 1 2.4863 -0.1409 -5.1124 11 1 3.6292 -1.7579 -3.7125 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8778 -0.4911 3.6694 15 8 2.5772 -1.4785 3.7808 16 6 1.3836 0.2069 4.8791 17 6 0.5782 1.3451 4.7734 18 6 0.1390 1.9643 5.9274 19 7 0.4690 1.4959 7.1145 20 6 1.2257 0.4265 7.2588 21 6 1.5688 -0.0599 8.6433 22 8 2.3930 -1.2234 8.5488 23 6 1.7136 -0.2511 6.1581 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7088 1.1617 -3.4843 31 1 3.1301 -0.7217 1.2488 32 1 1.6767 -1.7490 1.2490 33 1 0.9945 0.7581 2.3564 34 1 0.3036 1.7341 3.8040 35 1 -0.4838 2.8438 5.8559 36 1 0.6523 -0.3061 9.1795 37 1 2.1052 0.7222 9.1806 38 1 2.6528 -1.5920 9.4042 39 1 2.3371 -1.1240 6.2837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638757688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:23 Heat of formation + Delta-G solvation = -78.152400 kcal Electronic energy + Delta-G solvation = -21271.025782 eV Core-core repulsion = 17984.592587 eV Total energy + Delta-G solvation = -3286.433195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76058 -40.35017 -38.17867 -37.72913 -35.22363 -33.93082 -32.73073 -32.50064 -27.75968 -27.68379 -27.57940 -27.14504 -24.90516 -23.67695 -21.53197 -20.69790 -19.16558 -18.58766 -17.85400 -17.21135 -16.85402 -16.53513 -16.50858 -16.27731 -16.09101 -15.98903 -14.96680 -14.87517 -14.74652 -14.74271 -14.23422 -14.03279 -13.22495 -13.14327 -13.01003 -12.71139 -12.62325 -12.57886 -12.27322 -12.14819 -11.51228 -11.49985 -11.35965 -11.20835 -10.95181 -10.73531 -10.57411 -10.41150 -10.06769 -9.97935 -8.03579 -6.19160 -0.40843 0.01433 1.42366 1.45530 1.53440 1.76599 2.06571 2.46725 2.73897 2.80077 3.20369 3.50028 3.66649 3.79539 3.95707 4.16040 4.26107 4.36984 4.46389 4.52423 4.52871 4.68788 4.75985 4.86847 4.95015 5.01801 5.03018 5.09412 5.17192 5.26967 5.49439 5.54268 5.65762 5.66707 6.13804 6.18960 6.41689 6.48247 6.78501 6.84240 6.91485 7.08893 7.48643 8.95441 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.003494 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.629188 B = 8011.008598 C = 8552.275168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.145 3.855 13 N -0.696 5.696 14 C 0.546 3.454 15 O -0.580 6.580 16 C -0.098 4.098 17 C -0.138 4.138 18 C 0.108 3.892 19 N -0.475 5.475 20 C 0.108 3.892 21 C 0.133 3.867 22 O -0.589 6.589 23 C -0.112 4.112 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.261 0.739 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.410 0.590 34 H 0.163 0.837 35 H 0.205 0.795 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.409 0.591 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 4.245 19.775 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.021 3.979 13 N -0.348 5.348 14 C 0.333 3.667 15 O -0.461 6.461 16 C -0.109 4.109 17 C -0.159 4.159 18 C -0.049 4.049 19 N -0.187 5.187 20 C -0.029 4.029 21 C 0.055 3.945 22 O -0.399 6.399 23 C -0.133 4.133 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.249 0.751 34 H 0.181 0.819 35 H 0.222 0.778 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.261 0.739 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.958 4.181 19.781 20.433 hybrid contribution 0.647 -0.931 -1.529 1.904 sum -2.310 3.250 18.251 18.682 Atomic orbital electron populations 1.21689 0.96932 0.98792 1.00580 1.18365 0.93393 0.93112 0.90019 1.21691 0.98006 0.97712 1.00579 1.21265 1.31873 1.12248 0.91557 0.93728 1.25427 0.95115 0.95563 1.00895 1.69893 1.36913 1.23157 1.23674 0.85767 0.78645 0.78510 0.79931 1.20506 1.20772 1.20154 1.21406 0.97349 0.95307 0.83804 1.46013 1.52099 1.31744 1.04924 1.18666 0.80157 0.83820 0.84077 1.90728 1.39939 1.28024 1.87364 1.20417 0.99839 0.97380 0.93300 1.22673 0.96337 0.94137 1.02724 1.23309 0.96592 0.99428 0.85593 1.67223 1.11531 1.11345 1.28555 1.21329 0.93857 0.91538 0.96178 1.20647 0.95702 0.88258 0.89880 1.86416 1.71223 1.44711 1.37584 1.22015 0.99097 1.00870 0.91332 0.94299 0.91645 0.96298 0.96291 0.91633 0.94309 0.92955 0.93914 0.93894 0.75092 0.81944 0.77817 0.89284 0.89294 0.73894 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 4 C -0.53 -27.89 8.01 25.60 0.21 -27.69 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.56 5.15 84.66 0.44 2.00 16 7 N -0.90 -47.15 9.35 21.45 0.20 -46.95 16 8 Si 0.94 42.33 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.14 6.18 4.50 86.38 0.39 6.57 16 13 N -0.70 -24.41 4.92 -465.69 -2.29 -26.70 16 14 C 0.55 19.90 7.80 86.88 0.68 20.58 16 15 O -0.58 -25.81 16.45 -3.76 -0.06 -25.88 16 16 C -0.10 -2.87 5.91 -19.88 -0.12 -2.99 16 17 C -0.14 -2.96 9.62 22.63 0.22 -2.74 16 18 C 0.11 1.96 11.17 84.67 0.95 2.90 16 19 N -0.48 -10.22 10.25 -184.04 -1.89 -12.11 16 20 C 0.11 2.51 6.78 42.55 0.29 2.80 16 21 C 0.13 2.10 7.59 71.24 0.54 2.64 16 22 O -0.59 -10.03 12.11 -148.98 -1.80 -11.83 16 23 C -0.11 -3.23 8.98 22.63 0.20 -3.02 16 24 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 25 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 29 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 30 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 31 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.41 12.09 4.31 -92.71 -0.40 11.69 16 34 H 0.16 2.70 6.54 -2.91 -0.02 2.68 16 35 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.41 2.39 9.12 -74.06 -0.68 1.71 16 39 H 0.14 4.42 6.69 -2.91 -0.02 4.40 16 Total: -1.00 -67.52 321.56 1.12 -66.40 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.01 Total: 18.78 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.92 Total: -6.06 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.97 Total: -85.76 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -1.87 Total: -37.71 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.52 1.12 -66.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638757688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.756 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds