Wall clock time and date at job start Tue Mar 31 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35984 * 117.00152 * 2 1 4 4 C 1.38709 * 119.98392 * 180.02562 * 3 2 1 5 5 C 1.38095 * 120.01372 * 180.02562 * 4 3 2 6 6 C 1.38840 * 119.98567 * 359.96791 * 5 4 3 7 7 N 1.40148 * 120.01343 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00259 * 32.62837 * 7 6 5 9 9 O 1.21598 * 119.99463 * 5.04236 * 8 7 6 10 10 N 1.34768 * 120.00410 * 185.04010 * 8 7 6 11 11 C 1.46505 * 120.00228 * 0.02562 * 10 8 7 12 12 C 1.46505 * 120.00195 * 179.97438 * 10 8 7 13 13 H 1.08997 * 109.46944 * 0.02562 * 12 10 8 14 14 C 1.52999 * 109.47067 * 120.00367 * 12 10 8 15 15 C 1.50703 * 109.46975 * 240.00206 * 12 10 8 16 16 H 1.08000 * 120.00241 * 354.28143 * 15 12 10 17 17 C 1.37879 * 119.99558 * 174.27828 * 15 12 10 18 18 N 1.31515 * 119.99624 * 159.15806 * 17 15 12 19 19 Si 1.86797 * 120.00011 * 339.43416 * 17 15 12 20 20 H 1.48503 * 109.46941 * 179.72529 * 19 17 15 21 21 H 1.48505 * 109.47152 * 299.72235 * 19 17 15 22 22 H 1.48499 * 109.47379 * 59.72457 * 19 17 15 23 23 C 1.38835 * 119.96956 * 0.26198 * 6 5 4 24 24 C 1.38105 * 119.98372 * 359.52977 * 23 6 5 25 25 H 1.09008 * 109.46966 * 300.00420 * 1 2 3 26 26 H 1.09002 * 109.46897 * 60.00133 * 1 2 3 27 27 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.08005 * 119.99382 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.01140 * 179.97438 * 5 4 3 30 30 H 0.97002 * 120.00167 * 212.61592 * 7 6 5 31 31 H 1.08999 * 109.46878 * 270.00369 * 11 10 8 32 32 H 1.09006 * 109.46531 * 29.99327 * 11 10 8 33 33 H 1.08997 * 109.47626 * 149.99233 * 11 10 8 34 34 H 1.09001 * 109.47426 * 54.14969 * 14 12 10 35 35 H 1.08999 * 109.47561 * 174.15094 * 14 12 10 36 36 H 1.09004 * 109.47345 * 294.15406 * 14 12 10 37 37 H 0.96991 * 120.00054 * 355.21181 * 18 17 15 38 38 H 1.07993 * 120.00631 * 179.74081 * 23 6 5 39 39 H 1.08000 * 119.98949 * 180.21254 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0592 2.5139 0.0000 6 6 3.3034 3.6785 0.0004 7 7 3.9397 4.9272 0.0015 8 6 5.1218 5.0817 -0.6272 9 8 5.5918 4.1643 -1.2722 10 7 5.7829 6.2530 -0.5410 11 6 5.2169 7.3582 0.2365 12 6 7.0681 6.4207 -1.2240 13 1 7.3250 5.4992 -1.7462 14 6 6.9637 7.5661 -2.2331 15 6 8.1374 6.7396 -0.2110 16 1 7.8707 6.9014 0.8230 17 6 9.4561 6.8246 -0.6043 18 7 10.3217 7.4829 0.1354 19 14 10.0117 6.0115 -2.1916 20 1 11.4634 6.2533 -2.3899 21 1 9.7594 4.5501 -2.1139 22 1 9.2540 6.5846 -3.3330 23 6 1.9169 3.6055 0.0058 24 6 1.2906 2.3747 0.0009 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0194 0.3777 -0.0005 29 1 5.1377 2.5700 0.0000 30 1 3.5293 5.6803 0.4546 31 1 4.5864 7.9704 -0.4082 32 1 4.6188 6.9575 1.0551 33 1 6.0241 7.9686 0.6412 34 1 6.6060 8.4635 -1.7284 35 1 7.9452 7.7595 -2.6660 36 1 6.2656 7.2913 -3.0238 37 1 10.0201 7.9665 0.9201 38 1 1.3285 4.5110 0.0103 39 1 0.2121 2.3178 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:07 Heat of formation + Delta-G solvation = -26.038126 kcal Electronic energy + Delta-G solvation = -21487.625093 eV Core-core repulsion = 18203.451743 eV Total energy + Delta-G solvation = -3284.173350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50987 -39.56198 -37.48661 -35.54496 -34.18975 -32.70064 -31.06374 -30.26807 -28.68285 -27.15183 -26.26981 -24.78168 -22.83903 -22.57762 -20.82227 -19.16189 -18.24785 -17.79476 -17.49840 -16.80610 -16.02094 -15.79655 -15.15499 -15.06882 -14.36955 -13.88660 -13.66248 -13.37492 -13.35119 -12.91112 -12.82769 -12.62036 -12.58540 -12.06718 -11.96983 -11.79643 -11.57191 -11.38973 -11.26251 -10.87876 -10.50026 -10.06329 -9.77895 -9.73521 -9.47334 -9.11496 -8.90697 -8.34313 -7.90535 -7.49328 -6.51023 -4.14934 1.38382 1.46913 3.05666 3.26238 3.40507 3.50262 3.55513 3.64790 3.99279 4.37040 4.47604 4.73488 4.87000 4.95492 4.96247 5.17000 5.24976 5.34015 5.42690 5.48446 5.69729 5.81738 5.98164 6.01720 6.15753 6.30235 6.32069 6.39759 6.44918 6.58632 6.64572 6.91535 6.93858 7.04574 7.37268 7.41168 7.56691 7.89157 8.30562 8.44867 8.79383 9.07828 9.51310 10.84523 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.003886 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.359199 B = 7203.518609 C = 7649.857377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.097 3.903 4 C -0.128 4.128 5 C -0.082 4.082 6 C 0.146 3.854 7 N -0.693 5.693 8 C 0.697 3.303 9 O -0.581 6.581 10 N -0.598 5.598 11 C 0.084 3.916 12 C 0.250 3.750 13 H 0.057 0.943 14 C -0.158 4.158 15 C -0.616 4.616 16 H 0.062 0.938 17 C 0.042 3.958 18 N -0.896 5.896 19 Si 1.033 2.967 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.274 1.274 23 C -0.119 4.119 24 C -0.188 4.188 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.402 0.598 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.269 0.731 38 H 0.125 0.875 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.003 -6.914 0.830 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.052 3.948 4 C -0.147 4.147 5 C -0.103 4.103 6 C 0.051 3.949 7 N -0.342 5.342 8 C 0.399 3.601 9 O -0.459 6.459 10 N -0.332 5.332 11 C -0.060 4.060 12 C 0.148 3.852 13 H 0.075 0.925 14 C -0.216 4.216 15 C -0.654 4.654 16 H 0.080 0.920 17 C -0.164 4.164 18 N -0.529 5.529 19 Si 0.860 3.140 20 H -0.209 1.209 21 H -0.204 1.204 22 H -0.201 1.201 23 C -0.140 4.140 24 C -0.207 4.207 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.239 0.761 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.120 -7.968 -0.570 19.803 hybrid contribution -1.922 1.055 1.311 2.554 sum -20.042 -6.913 0.741 21.213 Atomic orbital electron populations 1.22991 0.78952 1.03555 1.01137 1.86072 1.20904 1.27105 1.89350 1.18953 0.92300 0.83971 0.99594 1.20335 0.91098 0.98371 1.04897 1.21184 1.01574 0.89871 0.97634 1.17490 0.90834 0.85085 1.01522 1.42900 1.22608 1.10958 1.57775 1.15968 0.80030 0.84045 0.80040 1.90872 1.68306 1.40504 1.46212 1.47291 1.22842 1.10809 1.52302 1.21574 0.99355 0.90730 0.94374 1.19131 0.78909 0.95370 0.91807 0.92542 1.22474 1.00882 0.99991 0.98298 1.22141 0.92721 1.54790 0.95704 0.92011 1.25638 0.92778 0.94695 1.03332 1.70866 1.37767 1.27353 1.16917 0.84217 0.76349 0.77542 0.75898 1.20944 1.20392 1.20058 1.20581 0.92382 0.97653 1.03381 1.20898 0.99554 0.91691 1.08574 0.92881 0.92869 0.88576 0.85026 0.83450 0.76112 0.93737 0.93195 0.89510 0.93513 0.91748 0.95519 0.92128 0.85736 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.83 10.50 -19.69 -0.21 -4.04 16 3 C 0.10 1.28 6.69 -39.23 -0.26 1.02 16 4 C -0.13 -1.86 9.98 -39.46 -0.39 -2.25 16 5 C -0.08 -1.36 8.66 -39.41 -0.34 -1.70 16 6 C 0.15 2.26 6.30 -83.61 -0.53 1.73 16 7 N -0.69 -11.03 5.19 -14.19 -0.07 -11.11 16 8 C 0.70 14.36 8.03 -86.93 -0.70 13.66 16 9 O -0.58 -13.98 13.30 5.28 0.07 -13.91 16 10 N -0.60 -12.41 2.75 -181.00 -0.50 -12.91 16 11 C 0.08 1.35 9.03 59.85 0.54 1.89 16 12 C 0.25 6.04 2.22 -69.08 -0.15 5.88 16 13 H 0.06 1.50 5.50 -51.93 -0.29 1.21 16 14 C -0.16 -3.43 8.99 37.16 0.33 -3.09 16 15 C -0.62 -16.80 8.32 -34.44 -0.29 -17.08 16 16 H 0.06 1.79 7.37 -52.49 -0.39 1.40 16 17 C 0.04 1.19 5.25 -17.82 -0.09 1.10 16 18 N -0.90 -26.75 13.70 55.43 0.76 -25.99 16 19 Si 1.03 25.26 26.38 -169.99 -4.48 20.77 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.20 5.95 56.52 0.34 -5.86 16 23 C -0.12 -1.47 9.96 -39.41 -0.39 -1.86 16 24 C -0.19 -2.18 9.03 -39.46 -0.36 -2.54 16 25 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.15 2.79 6.35 -52.49 -0.33 2.46 16 30 H 0.40 5.07 6.62 -40.82 -0.27 4.80 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 33 H 0.09 1.55 6.91 -51.93 -0.36 1.19 16 34 H 0.05 0.94 7.48 -51.93 -0.39 0.55 16 35 H 0.06 1.45 5.20 -51.93 -0.27 1.18 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -33.00 316.98 -6.38 -39.38 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.08 Total: 5.07 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.64 Total: -2.04 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.19 Total: -50.01 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.14 Total: -17.95 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.48 Total: 20.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.00 -6.38 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.337 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds