Wall clock time and date at job start Tue Mar 31 2020 00:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47407 * 2 1 4 4 C 1.50706 * 109.46784 * 119.99678 * 2 1 3 5 5 H 1.08001 * 120.00067 * 119.99993 * 4 2 1 6 6 C 1.37874 * 120.00385 * 299.99978 * 4 2 1 7 7 N 1.31519 * 119.99733 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00329 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47227 * 90.00157 * 8 6 4 10 10 H 1.48501 * 109.46989 * 209.99883 * 8 6 4 11 11 H 1.48497 * 109.46881 * 329.99987 * 8 6 4 12 12 N 1.46900 * 109.47169 * 239.99524 * 2 1 3 13 13 C 1.46897 * 111.00277 * 306.04681 * 12 2 1 14 14 C 1.46894 * 111.00167 * 70.00502 * 12 2 1 15 15 C 1.52997 * 109.47515 * 169.99883 * 14 12 2 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.38233 * 120.00099 * 269.72808 * 16 15 14 18 18 C 1.38239 * 119.99655 * 179.76882 * 17 16 15 19 19 C 1.38228 * 120.00132 * 0.48003 * 18 17 16 20 20 N 1.48023 * 120.00146 * 179.76894 * 19 18 17 21 21 O 1.21800 * 120.00131 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99688 * 0.02562 * 20 19 18 23 23 C 1.38237 * 120.00223 * 359.79707 * 19 18 17 24 24 C 1.38238 * 119.99946 * 359.94921 * 23 19 18 25 25 H 1.09007 * 109.46812 * 60.00226 * 1 2 3 26 26 H 1.09000 * 109.47407 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47682 * 300.00387 * 1 2 3 28 28 H 0.97001 * 120.00022 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47768 * 183.95429 * 13 12 2 30 30 H 1.09001 * 109.47114 * 303.96032 * 13 12 2 31 31 H 1.09004 * 109.46895 * 63.95547 * 13 12 2 32 32 H 1.09002 * 109.47104 * 49.99615 * 14 12 2 33 33 H 1.08998 * 109.46828 * 290.00448 * 14 12 2 34 34 H 1.09002 * 109.47153 * 59.99762 * 15 14 12 35 35 H 1.09001 * 109.46832 * 299.99953 * 15 14 12 36 36 H 1.07994 * 119.99860 * 0.02562 * 17 16 15 37 37 H 1.08003 * 119.99653 * 180.25721 * 18 17 16 38 38 H 1.07995 * 119.99771 * 179.97438 * 23 19 18 39 39 H 1.07991 * 120.00062 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1202 4.0081 9 1 3.6294 -0.5459 4.4126 10 1 1.3428 -0.9490 5.1121 11 1 2.4855 -2.5661 3.7121 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0970 -2.4090 15 6 2.4885 -0.5259 -3.5972 16 6 2.2145 0.2839 -4.8383 17 6 1.1365 -0.0303 -5.6445 18 6 0.8823 0.7155 -6.7803 19 6 1.7120 1.7692 -7.1152 20 7 1.4428 2.5647 -8.3342 21 8 2.1741 3.4928 -8.6296 22 8 0.4900 2.2910 -9.0419 23 6 2.7934 2.0799 -6.3121 24 6 3.0445 1.3374 -5.1734 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3635 0.5139 0.8900 28 1 0.7088 1.1616 3.4844 29 1 1.8663 -2.5523 -2.1646 30 1 1.6465 -2.5988 -0.3989 31 1 0.3555 -1.9521 -1.4399 32 1 2.1026 1.1187 -2.2604 33 1 0.6815 0.1052 -2.6087 34 1 2.1390 -1.5476 -3.7458 35 1 3.5601 -0.5340 -3.3974 36 1 0.4904 -0.8558 -5.3847 37 1 0.0376 0.4727 -7.4080 38 1 3.4417 2.9029 -6.5740 39 1 3.8890 1.5803 -4.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:15 Heat of formation + Delta-G solvation = 21.324609 kcal Electronic energy + Delta-G solvation = -20912.251633 eV Core-core repulsion = 17630.132084 eV Total energy + Delta-G solvation = -3282.119548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30089 -39.86217 -37.49690 -36.69638 -34.12532 -32.56016 -31.64361 -29.98688 -28.23751 -26.50850 -25.30487 -24.93357 -23.41294 -22.58069 -21.11773 -19.51816 -19.24723 -18.79542 -17.65745 -16.29367 -16.19490 -15.87800 -15.15897 -14.81470 -14.43418 -14.28216 -14.01497 -13.87681 -13.26999 -12.87336 -12.31230 -12.06253 -11.93429 -11.78401 -11.64033 -11.47743 -11.29175 -11.28389 -11.15332 -10.89896 -10.75910 -10.73589 -10.38429 -10.13979 -9.97325 -9.63416 -9.44904 -8.97773 -8.45775 -7.31366 -6.08361 -4.12572 -0.32049 0.72769 1.19353 1.27303 3.05642 3.26008 3.32820 3.35486 4.14720 4.24390 4.28352 4.40115 4.63092 4.74779 4.98743 5.08338 5.18030 5.23786 5.40036 5.45542 5.51939 5.63791 5.76635 5.86759 6.00024 6.06530 6.19106 6.25002 6.30175 6.36050 6.55286 6.71031 6.78123 7.01448 7.34447 7.50162 7.60788 7.74685 8.01585 8.26570 8.47882 8.93225 9.52911 10.98764 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039650 B = 0.002958 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.016406 B = 9464.205144 C = 9568.730391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.038 0.962 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.031 3.969 14 C 0.061 3.939 15 C -0.090 4.090 16 C -0.013 4.013 17 C -0.118 4.118 18 C -0.052 4.052 19 C -0.058 4.058 20 N 0.032 4.968 21 O -0.166 6.166 22 O -0.168 6.168 23 C -0.052 4.052 24 C -0.115 4.115 25 H 0.005 0.995 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -1.442 -15.876 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.118 4.118 14 C -0.068 4.068 15 C -0.128 4.128 16 C -0.014 4.014 17 C -0.137 4.137 18 C -0.071 4.071 19 C -0.141 4.141 20 N 0.550 4.450 21 O -0.382 6.382 22 O -0.383 6.383 23 C -0.071 4.071 24 C -0.134 4.134 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.146 -1.756 -15.093 15.345 hybrid contribution -0.785 -0.026 0.455 0.908 sum 1.361 -1.781 -14.638 14.809 Atomic orbital electron populations 1.22407 1.00786 0.99436 1.00497 1.19317 0.89793 0.94444 0.85919 0.94405 1.21091 1.30660 1.12575 0.89578 0.91913 1.24937 0.95183 0.95140 0.99065 1.69882 1.36956 1.23055 1.23510 0.86508 0.78542 0.79968 0.82442 1.20655 1.21351 1.19938 1.62344 1.58884 1.02502 1.02091 1.22287 0.96201 0.91942 1.01330 1.21966 0.96891 0.97819 0.90078 1.20908 1.03174 0.98356 0.90342 1.20610 0.92146 0.93537 0.95106 1.21181 0.98183 1.00714 0.93605 1.21041 0.97789 0.91484 0.96810 1.21097 1.03117 0.99513 0.90409 1.43661 0.99406 1.00127 1.01807 1.94529 1.45655 1.21172 1.76803 1.94525 1.20738 1.73787 1.49206 1.21071 0.94229 0.99074 0.92693 1.21230 1.01042 0.95025 0.96101 0.97580 0.94945 0.89303 0.92939 0.93810 0.90707 0.96430 0.91273 0.95405 0.90115 0.89190 0.83593 0.83142 0.83055 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 8.22 37.15 0.31 -3.66 16 2 C 0.21 5.00 2.31 -68.87 -0.16 4.84 16 3 H 0.04 0.99 7.93 -51.93 -0.41 0.58 16 4 C -0.50 -13.09 7.91 -34.44 -0.27 -13.37 16 5 H 0.06 1.64 7.12 -52.49 -0.37 1.27 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.53 -10.33 4.70 -236.30 -1.11 -11.44 16 13 C 0.03 0.54 8.45 60.06 0.51 1.05 16 14 C 0.06 0.95 4.51 -3.83 -0.02 0.93 16 15 C -0.09 -1.03 5.27 -27.88 -0.15 -1.18 16 16 C -0.01 -0.13 5.13 -104.62 -0.54 -0.67 16 17 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 18 C -0.05 -0.51 9.56 -39.58 -0.38 -0.89 16 19 C -0.06 -0.66 6.85 -79.95 -0.55 -1.20 16 20 N 0.03 0.42 4.45 33.96 0.15 0.58 16 21 O -0.17 -2.30 18.45 -29.46 -0.54 -2.84 16 22 O -0.17 -2.31 18.45 -29.46 -0.54 -2.85 16 23 C -0.05 -0.51 9.56 -39.58 -0.38 -0.89 16 24 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 25 H 0.01 0.11 6.91 -51.93 -0.36 -0.25 16 26 H 0.03 0.72 6.42 -51.93 -0.33 0.39 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.04 0.63 6.47 -51.93 -0.34 0.29 16 30 H 0.07 1.45 6.76 -51.93 -0.35 1.09 16 31 H 0.02 0.30 6.46 -51.93 -0.34 -0.03 16 32 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 33 H 0.03 0.44 7.06 -51.93 -0.37 0.07 16 34 H 0.08 0.86 6.49 -51.93 -0.34 0.53 16 35 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.15 1.26 7.61 -52.48 -0.40 0.86 16 38 H 0.15 1.28 7.61 -52.49 -0.40 0.88 16 39 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -28.66 324.06 -9.17 -37.83 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.13 Total: -1.18 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.49 Total: -16.51 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.33 Total: -35.00 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -1.09 Total: -5.69 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.66 -9.17 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.155 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds