Wall clock time and date at job start Tue Mar 31 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21324 * 120.00395 * 2 1 4 4 C 1.46622 * 120.00280 * 180.02562 * 2 1 3 5 5 C 1.41570 * 126.52009 * 179.97438 * 4 2 1 6 6 C 1.36242 * 106.98229 * 180.02562 * 5 4 2 7 7 C 1.46844 * 125.79892 * 180.02562 * 6 5 4 8 8 O 1.21676 * 119.99887 * 166.78178 * 7 6 5 9 9 N 1.34777 * 119.99996 * 346.78709 * 7 6 5 10 10 C 1.46495 * 120.00154 * 8.55317 * 9 7 6 11 11 C 1.46497 * 120.00161 * 188.55174 * 9 7 6 12 12 H 1.09007 * 109.47141 * 359.97438 * 11 9 7 13 13 C 1.53007 * 109.47358 * 119.99728 * 11 9 7 14 14 C 1.50701 * 109.47585 * 240.00229 * 11 9 7 15 15 H 1.07999 * 119.99851 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00325 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00098 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99726 * 359.97438 * 16 14 11 19 19 H 1.48507 * 109.47303 * 90.00624 * 18 16 14 20 20 H 1.48499 * 109.47147 * 210.00222 * 18 16 14 21 21 H 1.48502 * 109.47511 * 330.00197 * 18 16 14 22 22 N 1.37837 * 108.39960 * 0.02562 * 6 5 4 23 23 C 1.46491 * 125.34809 * 179.97438 * 22 6 5 24 24 C 1.34116 * 109.30093 * 0.22801 * 22 6 5 25 25 H 1.09002 * 109.46763 * 269.99545 * 1 2 3 26 26 H 1.08995 * 109.47647 * 29.99218 * 1 2 3 27 27 H 1.09002 * 109.47552 * 150.00104 * 1 2 3 28 28 H 1.08005 * 126.50490 * 0.02562 * 5 4 2 29 29 H 1.08998 * 109.47652 * 68.69884 * 10 9 7 30 30 H 1.09001 * 109.47494 * 188.69916 * 10 9 7 31 31 H 1.08999 * 109.47323 * 308.69972 * 10 9 7 32 32 H 1.09004 * 109.46949 * 300.00244 * 13 11 9 33 33 H 1.08993 * 109.46807 * 60.00095 * 13 11 9 34 34 H 1.08992 * 109.47141 * 180.02562 * 13 11 9 35 35 H 0.97001 * 119.99574 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.47240 * 82.61043 * 23 22 6 37 37 H 1.09000 * 109.47596 * 202.60237 * 23 22 6 38 38 H 1.08997 * 109.47624 * 322.61149 * 23 22 6 39 39 H 1.08004 * 125.82143 * 179.77332 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2697 -0.0006 5 6 3.6466 -1.4304 -0.0011 6 6 3.8941 -2.7702 -0.0021 7 6 5.2213 -3.3985 -0.0025 8 8 5.3322 -4.5862 0.2376 9 7 6.3166 -2.6597 -0.2686 10 6 6.2097 -1.2023 -0.3722 11 6 7.6142 -3.3139 -0.4542 12 1 7.4973 -4.3917 -0.3407 13 6 8.1465 -3.0029 -1.8546 14 6 8.5866 -2.8032 0.5777 15 1 8.2698 -2.0649 1.2994 16 6 9.8808 -3.2779 0.5998 17 7 10.7295 -2.8319 1.5001 18 14 10.4289 -4.5545 -0.6489 19 1 10.9641 -3.8707 -1.8537 20 1 11.4881 -5.4075 -0.0525 21 1 9.2704 -5.4003 -1.0334 22 7 2.6870 -3.4356 -0.0027 23 6 2.5216 -4.8911 -0.0044 24 6 1.6877 -2.5411 -0.0072 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 4.3835 -0.6408 -0.0009 29 1 5.9914 -0.7832 0.6100 30 1 7.1510 -0.7941 -0.7403 31 1 5.4071 -0.9451 -1.0634 32 1 7.4432 -3.3723 -2.6009 33 1 8.2636 -1.9252 -1.9677 34 1 9.1117 -3.4900 -1.9928 35 1 11.6402 -3.1656 1.5153 36 1 2.6120 -5.2682 1.0143 37 1 1.5379 -5.1446 -0.3995 38 1 3.2917 -5.3437 -0.6290 39 1 0.6327 -2.7720 -0.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:32 Heat of formation + Delta-G solvation = 3.575076 kcal Electronic energy + Delta-G solvation = -21909.621407 eV Core-core repulsion = 18626.732181 eV Total energy + Delta-G solvation = -3282.889226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62954 -39.00836 -38.49088 -35.69021 -33.42103 -32.58481 -31.28858 -30.23935 -28.40630 -27.15564 -26.27686 -25.15339 -22.86658 -22.48471 -20.36205 -19.41108 -18.21969 -17.07331 -16.72988 -15.90200 -15.78982 -15.47633 -15.06432 -14.78887 -14.70465 -14.53960 -14.01590 -13.78962 -13.14246 -12.89583 -12.62456 -12.52420 -12.44232 -12.34165 -12.28175 -12.25032 -12.05508 -11.78613 -11.18493 -10.92099 -10.61247 -10.18393 -9.78735 -9.67179 -9.40200 -9.21721 -8.84027 -8.65299 -8.32348 -7.78650 -6.15365 -4.16386 1.35129 1.76808 2.60562 3.19269 3.21778 3.35034 3.36416 3.72620 3.75149 4.25149 4.33284 4.65295 4.67100 4.96332 5.01800 5.13697 5.17699 5.21934 5.27429 5.39985 5.52150 5.70571 5.72809 5.88373 5.96235 6.13709 6.17570 6.23327 6.32250 6.45980 6.58495 6.79078 6.81046 6.99589 7.10972 7.28061 7.59141 7.70107 8.10336 8.42340 8.75122 8.87581 9.44630 10.97398 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.004675 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.842185 B = 5987.408197 C = 6626.239302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.423 3.577 3 O -0.473 6.473 4 C -0.273 4.273 5 C -0.106 4.106 6 C -0.041 4.041 7 C 0.574 3.426 8 O -0.558 6.558 9 N -0.570 5.570 10 C 0.071 3.929 11 C 0.232 3.768 12 H 0.063 0.937 13 C -0.162 4.162 14 C -0.528 4.528 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.893 5.893 18 Si 0.883 3.117 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.264 1.264 22 N -0.398 5.398 23 C 0.069 3.931 24 C 0.068 3.932 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.176 0.824 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.526 0.440 -5.689 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.303 3.697 3 O -0.350 6.350 4 C -0.281 4.281 5 C -0.130 4.130 6 C -0.152 4.152 7 C 0.362 3.638 8 O -0.439 6.439 9 N -0.299 5.299 10 C -0.072 4.072 11 C 0.131 3.869 12 H 0.081 0.919 13 C -0.220 4.220 14 C -0.566 4.566 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.531 5.531 18 Si 0.713 3.287 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.189 1.189 22 N -0.069 5.069 23 C -0.072 4.072 24 C -0.074 4.074 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.193 0.807 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -19.888 -0.038 -5.496 20.633 hybrid contribution 0.345 -0.735 -0.513 0.961 sum -19.543 -0.773 -6.009 20.460 Atomic orbital electron populations 1.22183 0.94470 1.04305 1.04303 1.21506 0.90723 0.86816 0.70667 1.90546 1.72163 1.34113 1.38182 1.20288 0.94619 0.93417 1.19777 1.22374 0.95650 0.94899 1.00063 1.20104 0.86764 0.91532 1.16839 1.16974 0.82688 0.86047 0.78074 1.90742 1.86687 1.15648 1.50850 1.47559 1.08191 1.06893 1.67274 1.22251 1.03148 0.80885 1.00934 1.19357 0.79282 0.95308 0.92988 0.91915 1.22489 0.99656 1.01792 0.98071 1.21155 0.94520 1.25942 1.15014 0.90193 1.24861 0.96320 0.95935 0.95564 1.69874 1.05358 1.43282 1.34552 0.86919 0.78638 0.82041 0.81077 1.20334 1.22105 1.18917 1.43644 1.05111 1.07396 1.50780 1.22284 1.03747 0.76159 1.05031 1.22496 0.93623 0.88058 1.03184 0.88882 0.89815 0.90143 0.80734 0.92259 0.89614 0.91614 0.94789 0.92290 0.92967 0.92397 0.89808 0.89775 0.88319 0.80471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 10.02 36.00 0.36 -1.04 16 2 C 0.42 5.13 7.24 -30.93 -0.22 4.90 16 3 O -0.47 -7.55 17.67 5.52 0.10 -7.45 16 4 C -0.27 -3.51 6.12 -105.11 -0.64 -4.15 16 5 C -0.11 -1.64 8.54 -39.03 -0.33 -1.97 16 6 C -0.04 -0.69 6.72 -82.40 -0.55 -1.24 16 7 C 0.57 11.79 7.58 -12.78 -0.10 11.70 16 8 O -0.56 -12.82 14.40 5.21 0.08 -12.75 16 9 N -0.57 -12.00 2.75 -176.75 -0.49 -12.49 16 10 C 0.07 1.23 7.72 59.84 0.46 1.69 16 11 C 0.23 5.59 2.17 -69.08 -0.15 5.44 16 12 H 0.06 1.66 5.99 -51.93 -0.31 1.35 16 13 C -0.16 -3.46 8.66 37.16 0.32 -3.13 16 14 C -0.53 -14.66 8.86 -34.44 -0.31 -14.96 16 15 H 0.08 2.41 7.89 -52.49 -0.41 1.99 16 16 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 17 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 18 Si 0.88 21.67 24.37 -169.99 -4.14 17.53 16 19 H -0.28 -6.47 6.87 56.52 0.39 -6.09 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 22 N -0.40 -5.18 3.12 -120.06 -0.37 -5.56 16 23 C 0.07 0.71 10.18 59.84 0.61 1.32 16 24 C 0.07 0.70 10.71 -16.41 -0.18 0.53 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.38 7.19 -51.93 -0.37 0.01 16 28 H 0.18 2.67 4.19 -52.48 -0.22 2.45 16 29 H 0.06 1.01 7.21 -51.93 -0.37 0.63 16 30 H 0.09 1.51 6.59 -51.93 -0.34 1.17 16 31 H 0.07 0.98 5.64 -51.93 -0.29 0.69 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.17 6.86 -51.93 -0.36 0.81 16 34 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.10 1.23 7.05 -51.93 -0.37 0.86 16 39 H 0.18 0.97 7.48 -52.48 -0.39 0.57 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -35.11 315.06 -5.04 -40.15 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.90 Total: 0.85 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -0.82 Total: 1.15 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.09 Total: -44.22 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.11 -5.04 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.721 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds