Wall clock time and date at job start Tue Mar 31 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21324 * 120.00395 * 2 1 4 4 C 1.46622 * 120.00280 * 180.02562 * 2 1 3 5 5 C 1.41570 * 126.52009 * 179.97438 * 4 2 1 6 6 C 1.36242 * 106.98229 * 180.02562 * 5 4 2 7 7 C 1.46844 * 125.79892 * 180.02562 * 6 5 4 8 8 O 1.21676 * 119.99887 * 166.78178 * 7 6 5 9 9 N 1.34777 * 119.99996 * 346.78709 * 7 6 5 10 10 C 1.46495 * 120.00154 * 8.55317 * 9 7 6 11 11 C 1.46497 * 120.00161 * 188.55174 * 9 7 6 12 12 H 1.09007 * 109.47141 * 359.97438 * 11 9 7 13 13 C 1.53007 * 109.47358 * 119.99728 * 11 9 7 14 14 C 1.50701 * 109.47585 * 240.00229 * 11 9 7 15 15 H 1.07999 * 119.99851 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00325 * 180.02562 * 14 11 9 17 17 N 1.31511 * 120.00098 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99726 * 359.97438 * 16 14 11 19 19 H 1.48507 * 109.47303 * 90.00624 * 18 16 14 20 20 H 1.48499 * 109.47147 * 210.00222 * 18 16 14 21 21 H 1.48502 * 109.47511 * 330.00197 * 18 16 14 22 22 N 1.37837 * 108.39960 * 0.02562 * 6 5 4 23 23 C 1.46491 * 125.34809 * 179.97438 * 22 6 5 24 24 C 1.34116 * 109.30093 * 0.22801 * 22 6 5 25 25 H 1.09002 * 109.46763 * 269.99545 * 1 2 3 26 26 H 1.08995 * 109.47647 * 29.99218 * 1 2 3 27 27 H 1.09002 * 109.47552 * 150.00104 * 1 2 3 28 28 H 1.08005 * 126.50490 * 0.02562 * 5 4 2 29 29 H 1.08998 * 109.47652 * 68.69884 * 10 9 7 30 30 H 1.09001 * 109.47494 * 188.69916 * 10 9 7 31 31 H 1.08999 * 109.47323 * 308.69972 * 10 9 7 32 32 H 1.09004 * 109.46949 * 300.00244 * 13 11 9 33 33 H 1.08993 * 109.46807 * 60.00095 * 13 11 9 34 34 H 1.08992 * 109.47141 * 180.02562 * 13 11 9 35 35 H 0.97001 * 119.99574 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.47240 * 82.61043 * 23 22 6 37 37 H 1.09000 * 109.47596 * 202.60237 * 23 22 6 38 38 H 1.08997 * 109.47624 * 322.61149 * 23 22 6 39 39 H 1.08004 * 125.82143 * 179.77332 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2697 -0.0006 5 6 3.6466 -1.4304 -0.0011 6 6 3.8941 -2.7702 -0.0021 7 6 5.2213 -3.3985 -0.0025 8 8 5.3322 -4.5862 0.2376 9 7 6.3166 -2.6597 -0.2686 10 6 6.2097 -1.2023 -0.3722 11 6 7.6142 -3.3139 -0.4542 12 1 7.4973 -4.3917 -0.3407 13 6 8.1465 -3.0029 -1.8546 14 6 8.5866 -2.8032 0.5777 15 1 8.2698 -2.0649 1.2994 16 6 9.8808 -3.2779 0.5998 17 7 10.7295 -2.8319 1.5001 18 14 10.4289 -4.5545 -0.6489 19 1 10.9641 -3.8707 -1.8537 20 1 11.4881 -5.4075 -0.0525 21 1 9.2704 -5.4003 -1.0334 22 7 2.6870 -3.4356 -0.0027 23 6 2.5216 -4.8911 -0.0044 24 6 1.6877 -2.5411 -0.0072 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 4.3835 -0.6408 -0.0009 29 1 5.9914 -0.7832 0.6100 30 1 7.1510 -0.7941 -0.7403 31 1 5.4071 -0.9451 -1.0634 32 1 7.4432 -3.3723 -2.6009 33 1 8.2636 -1.9252 -1.9677 34 1 9.1117 -3.4900 -1.9928 35 1 11.6402 -3.1656 1.5153 36 1 2.6120 -5.2682 1.0143 37 1 1.5379 -5.1446 -0.3995 38 1 3.2917 -5.3437 -0.6290 39 1 0.6327 -2.7720 -0.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:31 Heat of formation + Delta-G solvation = -21.546901 kcal Electronic energy + Delta-G solvation = -21910.710777 eV Core-core repulsion = 18626.732181 eV Total energy + Delta-G solvation = -3283.978596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.71614 -40.44004 -39.60300 -37.39668 -35.10004 -33.92982 -32.81636 -31.38809 -29.46577 -28.41245 -27.41021 -27.19046 -24.39798 -23.40979 -21.76599 -20.81651 -19.34604 -18.88034 -18.10663 -17.62605 -17.12824 -16.79293 -16.24617 -15.94576 -15.70963 -15.60099 -15.43277 -15.04471 -14.96750 -14.53283 -14.15120 -13.98241 -13.64325 -13.52520 -13.35003 -13.25694 -13.05993 -12.89608 -12.80963 -12.74581 -12.10464 -12.06399 -11.59535 -11.41281 -10.96392 -10.82524 -10.61668 -9.91431 -9.60188 -9.27943 -8.37200 -6.43133 0.47243 0.51640 1.25318 1.34092 1.43130 1.56542 2.12159 2.25767 2.33714 2.40349 2.97486 3.36514 3.60755 3.84499 4.06256 4.24279 4.26712 4.37464 4.40050 4.40892 4.46456 4.53848 4.64911 4.66258 4.75133 4.77048 4.83787 4.87454 4.96955 5.06413 5.24327 5.39377 5.41986 5.54414 5.65457 5.70567 6.14385 6.18616 6.55418 6.61344 6.83534 7.11481 7.25924 8.79229 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.004675 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.842185 B = 5987.408197 C = 6626.239302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.423 3.577 3 O -0.526 6.526 4 C -0.300 4.300 5 C -0.110 4.110 6 C -0.080 4.080 7 C 0.567 3.433 8 O -0.594 6.594 9 N -0.583 5.583 10 C 0.076 3.924 11 C 0.236 3.764 12 H 0.037 0.963 13 C -0.154 4.154 14 C -0.531 4.531 15 H 0.039 0.961 16 C 0.022 3.978 17 N -0.940 5.940 18 Si 0.946 3.054 19 H -0.251 1.251 20 H -0.294 1.294 21 H -0.259 1.259 22 N -0.402 5.402 23 C 0.066 3.934 24 C 0.119 3.881 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.164 0.836 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.269 0.731 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.070 0.930 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.182 -0.301 -7.484 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.306 3.694 3 O -0.407 6.407 4 C -0.307 4.307 5 C -0.135 4.135 6 C -0.190 4.190 7 C 0.358 3.642 8 O -0.478 6.478 9 N -0.311 5.311 10 C -0.066 4.066 11 C 0.133 3.867 12 H 0.055 0.945 13 C -0.212 4.212 14 C -0.569 4.569 15 H 0.058 0.942 16 C -0.177 4.177 17 N -0.579 5.579 18 Si 0.772 3.228 19 H -0.177 1.177 20 H -0.222 1.222 21 H -0.183 1.183 22 N -0.072 5.072 23 C -0.074 4.074 24 C -0.024 4.024 25 H 0.130 0.870 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.181 0.819 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.089 0.911 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -23.566 -0.769 -7.305 24.684 hybrid contribution 1.339 -0.465 0.156 1.426 sum -22.227 -1.234 -7.149 23.381 Atomic orbital electron populations 1.22202 0.89873 1.06223 1.06012 1.22237 0.93047 0.85496 0.68608 1.90539 1.73651 1.35615 1.40897 1.20566 0.93483 0.95371 1.21272 1.22423 0.97509 0.94212 0.99314 1.19523 0.86379 0.92068 1.21011 1.17542 0.84042 0.85707 0.76928 1.90700 1.87457 1.17174 1.52510 1.47585 1.07557 1.08157 1.67850 1.22344 1.03783 0.78976 1.01456 1.19044 0.80114 0.93912 0.93650 0.94500 1.22341 0.99716 1.02680 0.96474 1.21347 0.95569 1.24837 1.15180 0.94225 1.25698 0.96353 0.98030 0.97579 1.70014 1.05960 1.45181 1.36731 0.85914 0.78186 0.79420 0.79294 1.17673 1.22153 1.18340 1.43894 1.04299 1.08689 1.50365 1.22460 1.05823 0.74476 1.04618 1.23433 0.95402 0.86107 0.97434 0.86952 0.89601 0.86607 0.81852 0.92691 0.90182 0.88855 0.92281 0.91133 0.93484 0.92155 0.90287 0.84281 0.91089 0.74137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 10.02 71.23 0.71 -1.06 16 2 C 0.42 9.17 7.24 27.87 0.20 9.37 16 3 O -0.53 -16.57 17.67 -3.17 -0.06 -16.63 16 4 C -0.30 -6.89 6.12 -20.18 -0.12 -7.01 16 5 C -0.11 -3.34 8.54 22.63 0.19 -3.15 16 6 C -0.08 -2.63 6.72 39.99 0.27 -2.36 16 7 C 0.57 24.01 7.58 86.49 0.66 24.66 16 8 O -0.59 -28.38 14.40 -4.27 -0.06 -28.44 16 9 N -0.58 -25.39 2.75 -831.33 -2.29 -27.68 16 10 C 0.08 2.76 7.72 127.77 0.99 3.75 16 11 C 0.24 11.65 2.17 44.25 0.10 11.75 16 12 H 0.04 2.02 5.99 -2.38 -0.01 2.00 16 13 C -0.15 -6.46 8.66 71.98 0.62 -5.84 16 14 C -0.53 -30.82 8.86 25.60 0.23 -30.60 16 15 H 0.04 2.55 7.89 -2.91 -0.02 2.52 16 16 C 0.02 1.30 5.45 84.65 0.46 1.76 16 17 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 18 Si 0.95 45.21 24.37 68.60 1.67 46.88 16 19 H -0.25 -10.97 6.87 99.48 0.68 -10.29 16 20 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.26 -12.07 6.53 99.48 0.65 -11.42 16 22 N -0.40 -9.33 3.12 -533.74 -1.67 -11.00 16 23 C 0.07 1.19 10.18 127.77 1.30 2.49 16 24 C 0.12 1.85 10.71 84.43 0.90 2.76 16 25 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.12 0.28 7.19 -2.39 -0.02 0.27 16 28 H 0.16 5.15 4.19 -2.91 -0.01 5.14 16 29 H 0.05 1.99 7.21 -2.39 -0.02 1.98 16 30 H 0.08 2.93 6.59 -2.39 -0.02 2.91 16 31 H 0.09 2.83 5.64 -2.39 -0.01 2.82 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 2.75 6.86 -2.39 -0.02 2.74 16 34 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 35 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.14 0.94 8.10 -2.39 -0.02 0.92 16 38 H 0.07 1.72 7.05 -2.39 -0.02 1.70 16 39 H 0.24 0.53 7.48 -2.91 -0.02 0.51 16 Total: -1.00 -83.58 315.06 5.41 -78.18 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.00 Total: 10.61 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.51 Total: 6.54 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -3.65 Total: -97.13 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.12 Total: -45.07 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.88 kcal Total: -83.58 5.41 -78.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.630 kcal (2) G-P(sol) polarization free energy of solvation -83.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds