Wall clock time and date at job start Tue Mar 31 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35975 * 117.00266 * 2 1 4 4 C 1.38551 * 120.07721 * 359.95507 * 3 2 1 5 5 C 1.38249 * 120.00933 * 180.02562 * 4 3 2 6 6 C 1.38276 * 120.17904 * 359.97438 * 5 4 3 7 7 C 1.38188 * 120.16783 * 0.02744 * 6 5 4 8 8 C 1.38729 * 119.98509 * 359.97395 * 7 6 5 9 9 N 1.40118 * 120.09355 * 180.02562 * 8 7 6 10 10 C 1.34778 * 120.00022 * 24.75073 * 9 8 7 11 11 O 1.21298 * 119.99827 * 5.66702 * 10 9 8 12 12 C 1.50699 * 120.00077 * 185.67082 * 10 9 8 13 13 H 1.09002 * 109.46855 * 60.00136 * 12 10 9 14 14 C 1.53000 * 109.47121 * 299.99909 * 12 10 9 15 15 N 1.46503 * 109.46925 * 179.97438 * 12 10 9 16 16 C 1.46505 * 119.99536 * 60.00327 * 15 12 10 17 17 C 1.36938 * 120.00324 * 239.99906 * 15 12 10 18 18 H 1.07998 * 119.99699 * 34.59591 * 17 15 12 19 19 C 1.38807 * 120.00027 * 214.60025 * 17 15 12 20 20 N 1.31613 * 120.00212 * 5.17565 * 19 17 15 21 21 Si 1.86804 * 119.99707 * 185.18315 * 19 17 15 22 22 H 1.48501 * 109.47122 * 59.99873 * 21 19 17 23 23 H 1.48503 * 109.46950 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47131 * 299.99665 * 21 19 17 25 25 H 1.08993 * 109.46958 * 59.99906 * 1 2 3 26 26 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46882 * 300.00131 * 1 2 3 28 28 H 1.07998 * 119.99698 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.90734 * 180.27750 * 5 4 3 30 30 H 1.08007 * 119.91310 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.01053 * 180.02562 * 7 6 5 32 32 H 0.96993 * 120.00320 * 204.75329 * 9 8 7 33 33 H 1.08999 * 109.46743 * 300.00069 * 14 12 10 34 34 H 1.08996 * 109.46887 * 60.00228 * 14 12 10 35 35 H 1.09000 * 109.47101 * 179.97438 * 14 12 10 36 36 H 1.09001 * 109.46803 * 85.09475 * 16 15 12 37 37 H 1.09004 * 109.46380 * 205.08543 * 16 15 12 38 38 H 1.08994 * 109.47094 * 325.08779 * 16 15 12 39 39 H 0.97001 * 120.00343 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2934 2.3746 -0.0009 5 6 1.9226 3.6056 -0.0015 6 6 3.3033 3.6806 -0.0005 7 6 4.0615 2.5253 0.0004 8 6 3.4373 1.2863 0.0009 9 7 4.2039 0.1134 0.0023 10 6 5.4595 0.1296 0.4919 11 8 5.8900 1.1309 1.0244 12 6 6.3287 -1.0962 0.3777 13 1 6.4593 -1.3522 -0.6737 14 6 5.6622 -2.2637 1.1081 15 7 7.6365 -0.8253 0.9799 16 6 7.7290 -0.4563 2.3947 17 6 8.7723 -0.9171 0.2205 18 1 8.7493 -0.6348 -0.8217 19 6 9.9531 -1.3730 0.7902 20 7 9.9584 -1.8130 2.0306 21 14 11.5348 -1.3618 -0.2037 22 1 11.8496 0.0292 -0.6173 23 1 12.6449 -1.8941 0.6267 24 1 11.3672 -2.2112 -1.4101 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2149 2.3195 -0.0013 29 1 1.3340 4.5111 0.0023 30 1 3.7904 4.6446 -0.0014 31 1 5.1398 2.5868 0.0015 32 1 3.8310 -0.7101 -0.3490 33 1 5.5317 -2.0075 2.1595 34 1 4.6895 -2.4651 0.6596 35 1 6.2907 -3.1505 1.0251 36 1 7.7533 -1.3593 3.0048 37 1 8.6397 0.1192 2.5612 38 1 6.8632 0.1456 2.6706 39 1 10.7836 -2.1313 2.4288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120758872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:38 Heat of formation + Delta-G solvation = -35.185333 kcal Electronic energy + Delta-G solvation = -21869.701924 eV Core-core repulsion = 18585.131920 eV Total energy + Delta-G solvation = -3284.570003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78931 -40.40520 -38.27887 -37.23357 -35.72964 -34.00639 -31.56419 -31.06898 -30.06701 -28.02287 -27.99842 -25.93657 -24.46566 -23.24152 -22.65176 -20.78013 -19.40139 -18.91332 -18.18086 -17.79851 -16.90683 -16.76472 -16.51135 -16.07929 -15.90993 -15.55235 -15.21591 -14.88434 -14.68007 -14.35003 -14.24718 -13.72342 -13.27635 -13.13452 -12.95788 -12.81571 -12.67153 -12.54538 -12.43026 -12.22854 -12.18954 -12.05842 -11.97494 -11.89069 -11.45323 -10.71674 -10.48044 -9.54659 -8.72805 -8.66657 -7.87473 -5.47217 0.30885 0.44693 1.46245 1.49853 1.56010 1.72781 2.07261 2.36600 2.51490 2.87190 3.28828 3.58429 3.83384 3.95650 4.04902 4.29607 4.35253 4.39113 4.45890 4.47319 4.51438 4.63031 4.80495 4.81632 4.86576 4.94719 4.99466 5.18545 5.30143 5.34557 5.36167 5.54934 5.58452 5.61969 5.64218 5.87407 6.32460 6.45710 6.53409 7.10696 7.27611 7.77026 8.29020 9.16912 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029289 B = 0.004236 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.747249 B = 6608.726723 C = 7102.102852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.088 3.912 4 C -0.185 4.185 5 C -0.100 4.100 6 C -0.142 4.142 7 C -0.125 4.125 8 C 0.102 3.898 9 N -0.657 5.657 10 C 0.496 3.504 11 O -0.548 6.548 12 C 0.154 3.846 13 H 0.103 0.897 14 C -0.141 4.141 15 N -0.587 5.587 16 C 0.187 3.813 17 C -0.280 4.280 18 H 0.064 0.936 19 C -0.037 4.037 20 N -0.930 5.930 21 Si 0.974 3.026 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.267 1.267 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.063 0.937 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.120 0.880 32 H 0.422 0.578 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.001 0.999 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.339 4.731 -6.118 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.041 3.959 4 C -0.204 4.204 5 C -0.118 4.118 6 C -0.161 4.161 7 C -0.146 4.146 8 C 0.007 3.993 9 N -0.303 5.303 10 C 0.283 3.717 11 O -0.424 6.424 12 C 0.042 3.958 13 H 0.121 0.879 14 C -0.200 4.200 15 N -0.308 5.308 16 C 0.042 3.958 17 C -0.410 4.410 18 H 0.082 0.918 19 C -0.234 4.234 20 N -0.574 5.574 21 Si 0.800 3.200 22 H -0.208 1.208 23 H -0.217 1.217 24 H -0.192 1.192 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.180 0.820 29 H 0.176 0.824 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.019 0.981 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.727 5.114 -5.625 23.018 hybrid contribution 1.013 -0.243 -0.187 1.059 sum -20.714 4.871 -5.812 22.058 Atomic orbital electron populations 1.23352 0.76056 1.05600 1.02376 1.85995 1.23723 1.25987 1.89140 1.18770 0.89675 0.86274 1.01190 1.21409 1.01201 0.91037 1.06744 1.21276 0.93902 0.98302 0.98340 1.21218 0.94715 0.97829 1.02332 1.21282 1.01011 0.91424 1.00850 1.17494 0.88095 0.87503 1.06203 1.43559 1.13736 1.11586 1.61425 1.22686 0.81573 0.91420 0.76029 1.90571 1.73375 1.35700 1.42753 1.20540 0.85379 0.90263 0.99599 0.87882 1.22062 1.00566 0.97461 0.99940 1.43649 1.00800 1.78906 1.07458 1.20376 0.96038 0.94920 0.84449 1.19393 0.88833 1.38107 0.94661 0.91832 1.26048 1.02156 0.97546 0.97605 1.70171 1.27053 1.45696 1.14498 0.85276 0.78637 0.77901 0.78145 1.20777 1.21674 1.19237 0.91215 0.86418 0.91808 0.81985 0.82430 0.84390 0.86262 0.74030 0.94207 0.89260 0.92369 0.98093 0.96795 0.96563 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.16 9.91 -93.27 -0.92 -8.08 16 3 C 0.09 2.21 6.70 22.60 0.15 2.36 16 4 C -0.19 -3.58 9.04 22.35 0.20 -3.38 16 5 C -0.10 -1.95 10.04 22.28 0.22 -1.72 16 6 C -0.14 -3.63 10.04 22.27 0.22 -3.41 16 7 C -0.13 -4.17 8.72 22.38 0.20 -3.97 16 8 C 0.10 3.23 6.45 38.19 0.25 3.48 16 9 N -0.66 -21.18 5.21 -303.13 -1.58 -22.76 16 10 C 0.50 20.15 6.74 87.66 0.59 20.74 16 11 O -0.55 -26.56 11.59 -3.09 -0.04 -26.60 16 12 C 0.15 6.46 3.14 44.24 0.14 6.60 16 13 H 0.10 4.04 7.89 -2.39 -0.02 4.03 16 14 C -0.14 -5.01 9.09 71.98 0.65 -4.35 16 15 N -0.59 -31.37 2.55 -706.97 -1.80 -33.17 16 16 C 0.19 10.38 7.71 127.77 0.98 11.37 16 17 C -0.28 -15.99 9.45 84.03 0.79 -15.19 16 18 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 19 C -0.04 -2.11 5.18 84.86 0.44 -1.67 16 20 N -0.93 -56.33 11.13 21.65 0.24 -56.09 16 21 Si 0.97 45.71 29.56 68.60 2.03 47.74 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H 0.07 0.58 7.66 -2.39 -0.02 0.57 16 26 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.61 7.67 -2.39 -0.02 0.60 16 28 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16 29 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.12 4.79 5.79 -2.91 -0.02 4.77 16 32 H 0.42 11.05 7.61 -92.71 -0.71 10.35 16 33 H 0.04 1.51 7.67 -2.39 -0.02 1.49 16 34 H 0.09 2.32 7.45 -2.39 -0.02 2.30 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.00 0.05 7.73 -2.39 -0.02 0.03 16 37 H 0.01 0.81 7.27 -2.38 -0.02 0.79 16 38 H 0.02 0.86 6.15 -2.39 -0.01 0.84 16 39 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -74.39 321.08 4.24 -70.15 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.36 Total: 16.63 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.96 Total: 12.19 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -3.14 Total: -112.02 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.96 Total: -34.68 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.39 4.24 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120758872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.960 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds