Wall clock time and date at job start Tue Mar 31 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99804 * 2 1 4 4 H 1.08996 * 109.47536 * 330.00554 * 3 2 1 5 5 C 1.53000 * 109.46730 * 90.00463 * 3 2 1 6 6 C 1.50702 * 109.47082 * 209.99908 * 3 2 1 7 7 O 1.21286 * 119.99785 * 343.63628 * 6 3 2 8 8 N 1.34772 * 120.00052 * 163.63240 * 6 3 2 9 9 C 1.46503 * 119.99891 * 4.33554 * 8 6 3 10 10 C 1.50699 * 109.47251 * 94.33783 * 9 8 6 11 11 H 1.08010 * 119.99952 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00441 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00194 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99608 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47076 * 89.99902 * 14 12 10 16 16 H 1.48506 * 109.46667 * 209.99587 * 14 12 10 17 17 H 1.48496 * 109.47289 * 329.99618 * 14 12 10 18 18 C 1.46501 * 120.00253 * 184.33729 * 8 6 3 19 19 C 1.50697 * 109.47155 * 89.97919 * 18 8 6 20 20 C 1.38682 * 120.41504 * 264.31570 * 19 18 8 21 21 C 1.38631 * 118.41432 * 179.77950 * 20 19 18 22 22 C 1.38227 * 119.16252 * 0.52286 * 21 20 19 23 23 N 1.31853 * 120.76146 * 359.71901 * 22 21 20 24 24 C 1.31880 * 121.72951 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47138 * 299.99961 * 1 2 3 26 26 H 1.09004 * 109.47083 * 59.99692 * 1 2 3 27 27 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47648 * 52.11266 * 5 3 2 29 29 H 1.09009 * 109.47231 * 172.11919 * 5 3 2 30 30 H 1.09004 * 109.46973 * 292.11593 * 5 3 2 31 31 H 1.09003 * 109.47320 * 214.33835 * 9 8 6 32 32 H 1.09001 * 109.47439 * 334.33901 * 9 8 6 33 33 H 0.97002 * 120.00351 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.47271 * 209.97882 * 18 8 6 35 35 H 1.08999 * 109.46634 * 329.97623 * 18 8 6 36 36 H 1.08000 * 120.78968 * 0.02842 * 20 19 18 37 37 H 1.08000 * 120.41547 * 180.21925 * 21 20 19 38 38 H 1.08001 * 119.61418 * 179.74218 * 22 21 20 39 39 H 1.08003 * 119.61976 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9995 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2640 -0.7104 7 8 3.8877 0.2007 -0.9079 8 7 3.9165 2.4083 -1.1263 9 6 3.3013 3.6985 -0.8048 10 6 3.9189 4.2497 0.4544 11 1 4.6927 3.6947 0.9642 12 6 3.4970 5.4629 0.9554 13 7 4.0356 5.9437 2.0546 14 14 2.1593 6.4232 0.0734 15 1 0.8312 6.0235 0.6041 16 1 2.3645 7.8769 0.2967 17 1 2.2188 6.1326 -1.3817 18 6 5.1598 2.3621 -1.8998 19 6 4.8347 2.2876 -3.3693 20 6 4.7931 1.0624 -4.0179 21 6 4.4851 1.0417 -5.3694 22 6 4.2424 2.2350 -6.0234 23 7 4.2957 3.3821 -5.3754 24 6 4.5805 3.4394 -4.0890 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.7659 1.0086 1.9954 29 1 2.7861 2.7015 1.4459 30 1 1.2489 1.9359 1.9141 31 1 3.4680 4.3952 -1.6263 32 1 2.2302 3.5630 -0.6550 33 1 3.7386 6.7971 2.4072 34 1 5.7443 3.2607 -1.7021 35 1 5.7356 1.4832 -1.6099 36 1 4.9918 0.1461 -3.4819 37 1 4.4404 0.1053 -5.9057 38 1 4.0059 2.2276 -7.0772 39 1 4.6154 4.3977 -3.5922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127030491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:00 Heat of formation + Delta-G solvation = -39.963233 kcal Electronic energy + Delta-G solvation = -22300.240172 eV Core-core repulsion = 19015.462984 eV Total energy + Delta-G solvation = -3284.777188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21069 -39.34329 -37.22850 -35.37314 -33.24160 -32.30252 -31.66556 -30.55356 -28.23723 -26.52446 -26.30583 -23.47026 -23.35553 -22.54121 -21.62889 -18.67107 -17.36770 -16.91310 -16.81295 -16.38363 -15.91462 -15.36623 -15.26751 -14.78007 -14.47093 -14.21942 -13.75545 -13.50081 -13.17071 -12.87720 -12.83976 -12.56180 -12.40572 -12.02163 -11.87595 -11.56942 -11.38702 -11.30573 -10.97826 -10.79912 -10.69505 -10.37890 -9.77130 -9.69796 -9.52798 -9.32822 -9.09846 -8.84090 -8.71189 -7.92886 -6.33354 -4.34997 1.20840 1.43621 3.09615 3.18582 3.18982 3.21033 3.38104 3.98486 4.16557 4.40633 4.58257 4.94423 4.95088 5.06856 5.09687 5.18710 5.23175 5.29999 5.43667 5.53243 5.57310 5.69565 5.75933 5.81314 5.96357 6.12934 6.24447 6.26916 6.28787 6.37319 6.50078 6.55161 6.84546 7.06151 7.10624 7.31629 7.40305 7.95485 8.09641 8.27796 8.70257 8.80082 9.24718 10.78098 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.007808 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.101786 B = 3585.056804 C = 5015.464685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.077 3.923 4 H 0.078 0.922 5 C -0.190 4.190 6 C 0.525 3.475 7 O -0.547 6.547 8 N -0.586 5.586 9 C 0.204 3.796 10 C -0.543 4.543 11 H 0.084 0.916 12 C 0.081 3.919 13 N -0.883 5.883 14 Si 0.865 3.135 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.262 1.262 18 C 0.162 3.838 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.179 4.179 22 C 0.090 3.910 23 N -0.490 5.490 24 C 0.112 3.888 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.268 0.732 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -6.481 -9.440 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.016 3.984 4 H 0.096 0.904 5 C -0.247 4.247 6 C 0.312 3.688 7 O -0.425 6.425 8 N -0.317 5.317 9 C 0.083 3.917 10 C -0.581 4.581 11 H 0.102 0.898 12 C -0.124 4.124 13 N -0.519 5.519 14 Si 0.691 3.309 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.186 1.186 18 C 0.038 3.962 19 C -0.150 4.150 20 C -0.082 4.082 21 C -0.199 4.199 22 C -0.067 4.067 23 N -0.198 5.198 24 C -0.045 4.045 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.353 -6.254 -9.844 12.135 hybrid contribution -0.926 0.150 0.159 0.951 sum -4.279 -6.103 -9.685 12.221 Atomic orbital electron populations 1.22789 0.81546 1.02416 0.99867 1.87984 1.18904 1.26677 1.95106 1.21958 0.93291 0.85060 0.98086 0.90406 1.22627 1.03298 1.05742 0.93070 1.20221 0.86708 0.83648 0.78229 1.90594 1.64768 1.29895 1.57281 1.47839 1.24559 1.07182 1.52126 1.19946 0.93746 0.80557 0.97457 1.21285 1.23432 1.05356 1.08043 0.89801 1.24854 0.96116 0.96858 0.94551 1.69875 1.41791 1.19767 1.20494 0.87016 0.82707 0.80189 0.80998 1.19778 1.20663 1.18648 1.20152 0.87052 1.04485 0.84522 1.21463 1.01124 0.94186 0.98211 1.21672 0.94193 0.98276 0.94078 1.22119 1.02495 0.99750 0.95570 1.22705 0.96094 0.87955 0.99978 1.67700 1.12909 1.29410 1.09823 1.22799 0.93691 0.98493 0.89518 0.93938 0.94377 0.89736 0.92207 0.85552 0.92699 0.94717 0.95180 0.92136 0.88467 0.89376 0.84478 0.85139 0.83220 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.82 101.05 1.09 1.50 16 2 O -0.37 -6.76 9.93 -54.59 -0.54 -7.31 16 3 C 0.08 1.44 2.30 -27.88 -0.06 1.37 16 4 H 0.08 1.36 6.31 -51.93 -0.33 1.03 16 5 C -0.19 -3.58 9.32 37.16 0.35 -3.24 16 6 C 0.52 10.81 6.97 -10.99 -0.08 10.73 16 7 O -0.55 -12.34 16.14 -13.80 -0.22 -12.56 16 8 N -0.59 -11.45 2.44 -176.43 -0.43 -11.88 16 9 C 0.20 4.21 3.77 -5.19 -0.02 4.19 16 10 C -0.54 -13.12 7.27 -34.44 -0.25 -13.37 16 11 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 12 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 13 N -0.88 -24.15 13.96 55.43 0.77 -23.37 16 14 Si 0.86 18.75 27.47 -169.99 -4.67 14.08 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 18 C 0.16 2.78 5.61 -5.19 -0.03 2.75 16 19 C -0.15 -2.33 5.48 -104.48 -0.57 -2.90 16 20 C -0.06 -0.82 9.84 -39.27 -0.39 -1.21 16 21 C -0.18 -2.27 10.11 -39.44 -0.40 -2.67 16 22 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 23 N -0.49 -7.67 10.36 -13.25 -0.14 -7.80 16 24 C 0.11 1.78 10.77 -17.55 -0.19 1.59 16 25 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 26 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.13 2.72 4.47 -51.92 -0.23 2.48 16 30 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.03 0.70 6.60 -51.93 -0.34 0.36 16 32 H 0.03 0.61 5.19 -51.93 -0.27 0.34 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.10 1.61 8.06 -51.93 -0.42 1.19 16 35 H 0.09 1.52 7.28 -51.93 -0.38 1.15 16 36 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.16 2.39 7.60 -52.48 -0.40 1.99 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -29.67 326.53 -6.48 -36.15 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.33 Total: 6.11 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.84 Total: 1.68 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.21 Total: -43.06 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.77 Total: -19.87 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.67 Total: 14.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.67 -6.48 -36.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127030491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.818 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds