Wall clock time and date at job start Tue Mar 31 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99804 * 2 1 4 4 H 1.08996 * 109.47536 * 330.00554 * 3 2 1 5 5 C 1.53000 * 109.46730 * 90.00463 * 3 2 1 6 6 C 1.50702 * 109.47082 * 209.99908 * 3 2 1 7 7 O 1.21286 * 119.99785 * 343.63628 * 6 3 2 8 8 N 1.34772 * 120.00052 * 163.63240 * 6 3 2 9 9 C 1.46503 * 119.99891 * 4.33554 * 8 6 3 10 10 C 1.50699 * 109.47251 * 94.33783 * 9 8 6 11 11 H 1.08010 * 119.99952 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00441 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00194 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99608 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47076 * 89.99902 * 14 12 10 16 16 H 1.48506 * 109.46667 * 209.99587 * 14 12 10 17 17 H 1.48496 * 109.47289 * 329.99618 * 14 12 10 18 18 C 1.46501 * 120.00253 * 184.33729 * 8 6 3 19 19 C 1.50697 * 109.47155 * 89.97919 * 18 8 6 20 20 C 1.38682 * 120.41504 * 264.31570 * 19 18 8 21 21 C 1.38631 * 118.41432 * 179.77950 * 20 19 18 22 22 C 1.38227 * 119.16252 * 0.52286 * 21 20 19 23 23 N 1.31853 * 120.76146 * 359.71901 * 22 21 20 24 24 C 1.31880 * 121.72951 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47138 * 299.99961 * 1 2 3 26 26 H 1.09004 * 109.47083 * 59.99692 * 1 2 3 27 27 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47648 * 52.11266 * 5 3 2 29 29 H 1.09009 * 109.47231 * 172.11919 * 5 3 2 30 30 H 1.09004 * 109.46973 * 292.11593 * 5 3 2 31 31 H 1.09003 * 109.47320 * 214.33835 * 9 8 6 32 32 H 1.09001 * 109.47439 * 334.33901 * 9 8 6 33 33 H 0.97002 * 120.00351 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.47271 * 209.97882 * 18 8 6 35 35 H 1.08999 * 109.46634 * 329.97623 * 18 8 6 36 36 H 1.08000 * 120.78968 * 0.02842 * 20 19 18 37 37 H 1.08000 * 120.41547 * 180.21925 * 21 20 19 38 38 H 1.08001 * 119.61418 * 179.74218 * 22 21 20 39 39 H 1.08003 * 119.61976 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9995 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2640 -0.7104 7 8 3.8877 0.2007 -0.9079 8 7 3.9165 2.4083 -1.1263 9 6 3.3013 3.6985 -0.8048 10 6 3.9189 4.2497 0.4544 11 1 4.6927 3.6947 0.9642 12 6 3.4970 5.4629 0.9554 13 7 4.0356 5.9437 2.0546 14 14 2.1593 6.4232 0.0734 15 1 0.8312 6.0235 0.6041 16 1 2.3645 7.8769 0.2967 17 1 2.2188 6.1326 -1.3817 18 6 5.1598 2.3621 -1.8998 19 6 4.8347 2.2876 -3.3693 20 6 4.7931 1.0624 -4.0179 21 6 4.4851 1.0417 -5.3694 22 6 4.2424 2.2350 -6.0234 23 7 4.2957 3.3821 -5.3754 24 6 4.5805 3.4394 -4.0890 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.7659 1.0086 1.9954 29 1 2.7861 2.7015 1.4459 30 1 1.2489 1.9359 1.9141 31 1 3.4680 4.3952 -1.6263 32 1 2.2302 3.5630 -0.6550 33 1 3.7386 6.7971 2.4072 34 1 5.7443 3.2607 -1.7021 35 1 5.7356 1.4832 -1.6099 36 1 4.9918 0.1461 -3.4819 37 1 4.4404 0.1053 -5.9057 38 1 4.0059 2.2276 -7.0772 39 1 4.6154 4.3977 -3.5922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127030491.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:00 Heat of formation + Delta-G solvation = -58.132727 kcal Electronic energy + Delta-G solvation = -22301.028061 eV Core-core repulsion = 19015.462984 eV Total energy + Delta-G solvation = -3285.565077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52618 -40.70341 -38.59885 -37.00691 -34.85764 -33.83431 -32.86504 -31.90469 -29.98217 -27.79314 -27.57264 -24.90904 -24.62856 -24.13832 -22.87921 -20.21118 -19.12641 -18.45795 -17.96218 -17.85983 -17.14934 -16.82149 -16.55359 -16.17169 -16.02883 -15.58627 -15.16057 -14.70503 -14.56134 -14.41226 -14.14154 -13.96377 -13.89566 -13.41122 -13.35801 -13.08071 -12.78021 -12.67916 -12.63074 -12.37794 -12.12146 -11.97834 -11.66181 -11.00286 -10.79887 -10.75858 -10.47631 -10.46602 -9.96721 -9.54012 -8.28014 -6.33406 0.09598 0.31084 1.40118 1.44634 1.51473 1.59276 1.96171 2.35101 2.83587 3.02571 3.08715 3.52202 3.58085 3.83854 3.85469 3.92507 4.07412 4.09111 4.14782 4.45105 4.49070 4.52812 4.60175 4.67934 4.72300 4.75721 4.80928 4.83218 4.87540 4.90054 5.18124 5.35116 5.39614 5.50401 5.56668 5.75861 6.08532 6.17041 6.52868 6.71108 6.99244 7.17230 7.31178 8.87062 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.007808 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.101786 B = 3585.056804 C = 5015.464685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.393 6.393 3 C 0.081 3.919 4 H 0.095 0.905 5 C -0.182 4.182 6 C 0.516 3.484 7 O -0.573 6.573 8 N -0.586 5.586 9 C 0.212 3.788 10 C -0.531 4.531 11 H 0.040 0.960 12 C 0.030 3.970 13 N -0.934 5.934 14 Si 0.925 3.075 15 H -0.260 1.260 16 H -0.287 1.287 17 H -0.240 1.240 18 C 0.161 3.839 19 C -0.157 4.157 20 C -0.066 4.066 21 C -0.168 4.168 22 C 0.092 3.908 23 N -0.509 5.509 24 C 0.102 3.898 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 -6.886 -11.884 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.311 6.311 3 C 0.020 3.980 4 H 0.113 0.887 5 C -0.240 4.240 6 C 0.304 3.696 7 O -0.453 6.453 8 N -0.316 5.316 9 C 0.091 3.909 10 C -0.569 4.569 11 H 0.058 0.942 12 C -0.170 4.170 13 N -0.573 5.573 14 Si 0.748 3.252 15 H -0.185 1.185 16 H -0.213 1.213 17 H -0.163 1.163 18 C 0.038 3.962 19 C -0.160 4.160 20 C -0.093 4.093 21 C -0.187 4.187 22 C -0.065 4.065 23 N -0.217 5.217 24 C -0.055 4.055 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.183 0.817 38 H 0.204 0.796 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.448 -6.668 -12.306 15.020 hybrid contribution -0.223 0.153 0.900 0.939 sum -5.671 -6.515 -11.407 14.308 Atomic orbital electron populations 1.23103 0.78930 1.04348 1.01115 1.87958 1.21787 1.26173 1.95214 1.21881 0.92673 0.86005 0.97450 0.88716 1.22484 1.03968 1.03825 0.93701 1.20698 0.87482 0.83406 0.78026 1.90567 1.65674 1.30699 1.58387 1.47890 1.25042 1.06648 1.52039 1.19794 0.94152 0.81069 0.95906 1.21310 1.21971 1.04819 1.08817 0.94171 1.25610 0.98421 0.97879 0.95083 1.70023 1.44103 1.20495 1.22682 0.86048 0.80053 0.78119 0.80993 1.18508 1.21321 1.16338 1.20174 0.86236 1.04018 0.85734 1.21241 1.02719 0.95028 0.97037 1.21767 0.94647 0.97561 0.95318 1.22463 1.00499 1.01249 0.94511 1.23346 0.94456 0.87231 1.01475 1.67735 1.13574 1.30865 1.09564 1.22770 0.94390 0.98333 0.89984 0.92694 0.93039 0.87604 0.93261 0.88337 0.90290 0.93521 0.93722 0.92216 0.88630 0.90150 0.85017 0.81689 0.79608 0.82724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.82 113.37 1.23 1.72 16 2 O -0.39 -13.80 9.93 -130.47 -1.30 -15.10 16 3 C 0.08 2.93 2.30 29.85 0.07 3.00 16 4 H 0.10 3.08 6.31 -2.39 -0.02 3.06 16 5 C -0.18 -6.81 9.32 71.98 0.67 -6.14 16 6 C 0.52 21.24 6.97 87.66 0.61 21.85 16 7 O -0.57 -26.12 16.14 15.46 0.25 -25.88 16 8 N -0.59 -22.98 2.44 -830.49 -2.03 -25.00 16 9 C 0.21 8.61 3.77 85.63 0.32 8.93 16 10 C -0.53 -26.17 7.27 25.60 0.19 -25.98 16 11 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 12 C 0.03 1.54 5.47 84.65 0.46 2.00 16 13 N -0.93 -52.56 13.96 21.45 0.30 -52.26 16 14 Si 0.92 37.73 27.47 68.60 1.88 39.61 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 18 C 0.16 5.67 5.61 85.63 0.48 6.15 16 19 C -0.16 -4.91 5.48 -19.77 -0.11 -5.02 16 20 C -0.07 -1.87 9.84 22.47 0.22 -1.65 16 21 C -0.17 -3.71 10.11 22.36 0.23 -3.49 16 22 C 0.09 2.09 11.18 84.69 0.95 3.04 16 23 N -0.51 -14.78 10.36 -195.85 -2.03 -16.81 16 24 C 0.10 3.12 10.77 84.67 0.91 4.03 16 25 H 0.05 1.17 8.07 -2.39 -0.02 1.15 16 26 H 0.05 1.09 8.09 -2.39 -0.02 1.07 16 27 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 4.30 4.47 -2.38 -0.01 4.28 16 30 H 0.08 2.51 8.07 -2.38 -0.02 2.49 16 31 H 0.05 1.82 6.60 -2.39 -0.02 1.80 16 32 H 0.04 1.71 5.19 -2.39 -0.01 1.70 16 33 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.10 3.30 8.06 -2.39 -0.02 3.28 16 35 H 0.08 2.90 7.28 -2.39 -0.02 2.89 16 36 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.16 4.62 7.60 -2.91 -0.02 4.60 16 Total: -1.00 -65.22 326.53 4.30 -60.92 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.99 Total: 26.07 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.23 Total: 8.46 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -3.76 Total: -94.08 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.05 Total: -40.97 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.88 Total: 39.61 kcal Total: -65.22 4.30 -60.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127030491.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.783 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds