Wall clock time and date at job start Tue Mar 31 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99697 * 2 1 4 4 H 1.08998 * 109.47070 * 30.00181 * 3 2 1 5 5 C 1.52991 * 109.47303 * 269.99544 * 3 2 1 6 6 C 1.50702 * 109.46975 * 149.99729 * 3 2 1 7 7 O 1.21286 * 120.00220 * 16.26246 * 6 3 2 8 8 N 1.34776 * 120.00046 * 196.26096 * 6 3 2 9 9 C 1.46497 * 120.00111 * 5.43713 * 8 6 3 10 10 C 1.50705 * 109.46705 * 84.60405 * 9 8 6 11 11 H 1.07999 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99868 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00010 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47106 * 90.00516 * 14 12 10 16 16 H 1.48500 * 109.47260 * 210.00510 * 14 12 10 17 17 H 1.48499 * 109.47385 * 330.00282 * 14 12 10 18 18 C 1.46498 * 120.00186 * 185.44254 * 8 6 3 19 19 C 1.50701 * 109.47174 * 89.99765 * 18 8 6 20 20 C 1.38684 * 120.41774 * 269.71954 * 19 18 8 21 21 C 1.38619 * 118.41821 * 179.78092 * 20 19 18 22 22 C 1.38229 * 119.16068 * 0.52087 * 21 20 19 23 23 N 1.31850 * 120.76883 * 359.72116 * 22 21 20 24 24 C 1.31889 * 121.71809 * 0.02562 * 23 22 21 25 25 H 1.08992 * 109.47455 * 299.99658 * 1 2 3 26 26 H 1.09008 * 109.47314 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47068 * 55.16339 * 5 3 2 29 29 H 1.08998 * 109.47729 * 295.16545 * 5 3 2 30 30 H 1.09000 * 109.47382 * 175.16079 * 5 3 2 31 31 H 1.08995 * 109.47420 * 204.60270 * 9 8 6 32 32 H 1.08996 * 109.47392 * 324.61125 * 9 8 6 33 33 H 0.97000 * 119.99821 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47706 * 209.99749 * 18 8 6 35 35 H 1.09006 * 109.47099 * 329.99747 * 18 8 6 36 36 H 1.07995 * 120.78550 * 0.02991 * 20 19 18 37 37 H 1.07999 * 120.41880 * 180.22156 * 21 20 19 38 38 H 1.08006 * 119.61546 * 179.74398 * 22 21 20 39 39 H 1.08002 * 119.61257 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7714 -1.4424 6 6 3.3385 1.2640 0.7105 7 8 3.8867 0.2006 0.9097 8 7 3.9174 2.4085 1.1245 9 6 3.2029 3.6805 0.9915 10 6 2.2925 3.8716 2.1771 11 1 2.2507 3.1208 2.9523 12 6 1.5138 5.0054 2.2727 13 7 1.5652 5.9199 1.3289 14 14 0.3858 5.2426 3.7427 15 1 1.1188 5.9564 4.8189 16 1 -0.7971 6.0423 3.3349 17 1 -0.0610 3.9177 4.2427 18 6 5.2611 2.3807 1.7074 19 6 6.2858 2.5529 0.6159 20 6 6.8078 1.4469 -0.0381 21 6 7.7446 1.6535 -1.0387 22 6 8.1327 2.9451 -1.3418 23 7 7.6188 3.9730 -0.6955 24 6 6.7219 3.8143 0.2584 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.2712 1.7194 -1.9807 29 1 2.9491 1.1274 -1.9306 30 1 2.5803 2.7993 -1.4436 31 1 3.9220 4.4986 0.9500 32 1 2.6106 3.6707 0.0765 33 1 1.0170 6.7173 1.3959 34 1 5.3606 3.1905 2.4301 35 1 5.4203 1.4255 2.2078 36 1 6.4889 0.4488 0.2233 37 1 8.1695 0.8156 -1.5714 38 1 8.8652 3.1142 -2.1173 39 1 6.3237 4.6805 0.7660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127030746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:03 Heat of formation + Delta-G solvation = -46.508235 kcal Electronic energy + Delta-G solvation = -22238.326334 eV Core-core repulsion = 18953.265333 eV Total energy + Delta-G solvation = -3285.061001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11777 -39.23032 -37.12186 -35.21627 -33.18524 -32.23538 -31.61850 -30.61549 -27.60433 -26.48383 -26.09164 -23.68033 -23.32689 -22.64645 -21.56853 -18.66767 -16.97910 -16.94072 -16.55601 -16.20200 -15.78639 -15.28358 -15.01245 -14.87123 -14.62706 -14.14506 -13.68194 -13.43036 -13.09873 -12.79490 -12.72767 -12.53122 -12.24581 -11.99793 -11.74910 -11.59612 -11.33627 -11.19585 -11.07953 -10.75775 -10.68995 -10.24210 -9.88052 -9.60847 -9.48448 -9.25102 -9.02032 -8.72818 -8.58252 -7.85028 -6.27343 -4.35846 1.28668 1.50964 3.17050 3.23705 3.25366 3.31458 3.51410 4.07396 4.24119 4.53793 4.65643 5.00917 5.04812 5.14255 5.17126 5.26027 5.32722 5.47648 5.56980 5.60674 5.66210 5.74431 5.87197 5.89488 6.01506 6.05450 6.14031 6.16128 6.34041 6.41402 6.56402 6.64015 6.92168 7.07928 7.33357 7.53367 7.67704 7.95239 8.16875 8.19207 8.70190 8.92705 9.32864 10.78924 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.006907 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.180323 B = 4053.167641 C = 5431.761450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.069 3.931 4 H 0.105 0.895 5 C -0.165 4.165 6 C 0.526 3.474 7 O -0.555 6.555 8 N -0.591 5.591 9 C 0.231 3.769 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.887 5.887 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.160 3.840 19 C -0.146 4.146 20 C -0.057 4.057 21 C -0.180 4.180 22 C 0.090 3.910 23 N -0.489 5.489 24 C 0.115 3.885 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.267 0.733 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.724 -5.814 -4.237 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.008 3.992 4 H 0.123 0.877 5 C -0.222 4.222 6 C 0.313 3.687 7 O -0.434 6.434 8 N -0.322 5.322 9 C 0.112 3.888 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.037 3.963 19 C -0.149 4.149 20 C -0.084 4.084 21 C -0.200 4.200 22 C -0.068 4.068 23 N -0.197 5.197 24 C -0.042 4.042 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.295 -5.491 -4.404 8.808 hybrid contribution -1.238 -0.243 0.921 1.562 sum 4.057 -5.734 -3.483 7.841 Atomic orbital electron populations 1.22805 0.81402 1.02222 1.00233 1.87943 1.19105 1.26528 1.95050 1.21991 0.94626 0.86027 0.96571 0.87725 1.22181 1.02516 1.02377 0.95153 1.20190 0.86356 0.83621 0.78488 1.90576 1.65413 1.29958 1.57414 1.48159 1.15035 1.09180 1.59858 1.19608 0.92138 0.79213 0.97846 1.21515 1.24121 1.05590 1.07075 0.91951 1.24940 0.96814 0.95473 0.96416 1.69919 1.40111 1.09555 1.32934 0.86524 0.80200 0.78406 0.82575 1.20366 1.21003 1.19742 1.20138 0.80138 1.03831 0.92241 1.21448 0.98815 0.94338 1.00272 1.21668 0.93559 0.99701 0.93444 1.22103 0.99791 0.98652 0.99474 1.22697 0.97860 0.88481 0.97720 1.67707 1.09904 1.34947 1.07191 1.22797 0.92098 0.96480 0.92873 0.93693 0.94188 0.89899 0.91779 0.92268 0.90245 0.94258 0.94023 0.92374 0.88993 0.89627 0.84529 0.85230 0.83272 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 101.05 1.09 1.53 16 2 O -0.37 -7.03 9.93 -54.59 -0.54 -7.57 16 3 C 0.07 1.33 2.30 -27.89 -0.06 1.27 16 4 H 0.11 2.14 6.38 -51.93 -0.33 1.81 16 5 C -0.16 -2.79 9.29 37.15 0.34 -2.45 16 6 C 0.53 11.14 6.90 -10.98 -0.08 11.06 16 7 O -0.55 -12.73 16.06 -13.81 -0.22 -12.95 16 8 N -0.59 -11.98 2.45 -176.44 -0.43 -12.41 16 9 C 0.23 5.18 4.80 -5.19 -0.02 5.16 16 10 C -0.54 -13.48 8.68 -34.44 -0.30 -13.78 16 11 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -23.37 13.29 55.43 0.74 -22.64 16 14 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 C 0.16 2.83 5.58 -5.19 -0.03 2.80 16 19 C -0.15 -2.38 5.48 -104.48 -0.57 -2.95 16 20 C -0.06 -0.87 9.86 -39.28 -0.39 -1.26 16 21 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 22 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 23 N -0.49 -7.89 10.36 -13.25 -0.14 -8.03 16 24 C 0.11 1.87 10.86 -17.55 -0.19 1.68 16 25 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 26 H 0.04 0.51 7.79 -51.92 -0.40 0.11 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.95 7.79 -51.92 -0.40 0.54 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.39 6.18 -51.93 -0.32 1.07 16 31 H 0.04 0.91 8.03 -51.93 -0.42 0.50 16 32 H 0.04 0.96 4.81 -51.93 -0.25 0.71 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 35 H 0.09 1.51 7.31 -51.93 -0.38 1.13 16 36 H 0.14 2.13 7.98 -52.49 -0.42 1.71 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.16 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 333.21 15.07 5.02 5.02 Total: -1.00 -29.46 333.21 -6.92 -36.38 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.42 Total: 4.49 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.90 Total: 2.91 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.17 Total: -43.08 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.76 Total: -20.52 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.46 -6.92 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127030746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.133 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds