Wall clock time and date at job start Tue Mar 31 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99697 * 2 1 4 4 H 1.08998 * 109.47070 * 30.00181 * 3 2 1 5 5 C 1.52991 * 109.47303 * 269.99544 * 3 2 1 6 6 C 1.50702 * 109.46975 * 149.99729 * 3 2 1 7 7 O 1.21286 * 120.00220 * 16.26246 * 6 3 2 8 8 N 1.34776 * 120.00046 * 196.26096 * 6 3 2 9 9 C 1.46497 * 120.00111 * 5.43713 * 8 6 3 10 10 C 1.50705 * 109.46705 * 84.60405 * 9 8 6 11 11 H 1.07999 * 120.00088 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99868 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00010 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47106 * 90.00516 * 14 12 10 16 16 H 1.48500 * 109.47260 * 210.00510 * 14 12 10 17 17 H 1.48499 * 109.47385 * 330.00282 * 14 12 10 18 18 C 1.46498 * 120.00186 * 185.44254 * 8 6 3 19 19 C 1.50701 * 109.47174 * 89.99765 * 18 8 6 20 20 C 1.38684 * 120.41774 * 269.71954 * 19 18 8 21 21 C 1.38619 * 118.41821 * 179.78092 * 20 19 18 22 22 C 1.38229 * 119.16068 * 0.52087 * 21 20 19 23 23 N 1.31850 * 120.76883 * 359.72116 * 22 21 20 24 24 C 1.31889 * 121.71809 * 0.02562 * 23 22 21 25 25 H 1.08992 * 109.47455 * 299.99658 * 1 2 3 26 26 H 1.09008 * 109.47314 * 60.00178 * 1 2 3 27 27 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47068 * 55.16339 * 5 3 2 29 29 H 1.08998 * 109.47729 * 295.16545 * 5 3 2 30 30 H 1.09000 * 109.47382 * 175.16079 * 5 3 2 31 31 H 1.08995 * 109.47420 * 204.60270 * 9 8 6 32 32 H 1.08996 * 109.47392 * 324.61125 * 9 8 6 33 33 H 0.97000 * 119.99821 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47706 * 209.99749 * 18 8 6 35 35 H 1.09006 * 109.47099 * 329.99747 * 18 8 6 36 36 H 1.07995 * 120.78550 * 0.02991 * 20 19 18 37 37 H 1.07999 * 120.41880 * 180.22156 * 21 20 19 38 38 H 1.08006 * 119.61546 * 179.74398 * 22 21 20 39 39 H 1.08002 * 119.61257 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2177 1.7714 -1.4424 6 6 3.3385 1.2640 0.7105 7 8 3.8867 0.2006 0.9097 8 7 3.9174 2.4085 1.1245 9 6 3.2029 3.6805 0.9915 10 6 2.2925 3.8716 2.1771 11 1 2.2507 3.1208 2.9523 12 6 1.5138 5.0054 2.2727 13 7 1.5652 5.9199 1.3289 14 14 0.3858 5.2426 3.7427 15 1 1.1188 5.9564 4.8189 16 1 -0.7971 6.0423 3.3349 17 1 -0.0610 3.9177 4.2427 18 6 5.2611 2.3807 1.7074 19 6 6.2858 2.5529 0.6159 20 6 6.8078 1.4469 -0.0381 21 6 7.7446 1.6535 -1.0387 22 6 8.1327 2.9451 -1.3418 23 7 7.6188 3.9730 -0.6955 24 6 6.7219 3.8143 0.2584 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.2712 1.7194 -1.9807 29 1 2.9491 1.1274 -1.9306 30 1 2.5803 2.7993 -1.4436 31 1 3.9220 4.4986 0.9500 32 1 2.6106 3.6707 0.0765 33 1 1.0170 6.7173 1.3959 34 1 5.3606 3.1905 2.4301 35 1 5.4203 1.4255 2.2078 36 1 6.4889 0.4488 0.2233 37 1 8.1695 0.8156 -1.5714 38 1 8.8652 3.1142 -2.1173 39 1 6.3237 4.6805 0.7660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127030746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:03 Heat of formation + Delta-G solvation = -63.304331 kcal Electronic energy + Delta-G solvation = -22239.054667 eV Core-core repulsion = 18953.265333 eV Total energy + Delta-G solvation = -3285.789334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47804 -40.66186 -38.56664 -36.90430 -34.87057 -33.76435 -32.86138 -31.97375 -29.37346 -27.75451 -27.51338 -25.34927 -24.57552 -24.16296 -22.88146 -20.24625 -18.77405 -18.36412 -17.90472 -17.75378 -17.13135 -16.67623 -16.53135 -16.39809 -16.13774 -15.60616 -15.06717 -14.66445 -14.51043 -14.27380 -14.04025 -13.92557 -13.87723 -13.48026 -13.19598 -13.14805 -12.85876 -12.71313 -12.65916 -12.42700 -12.14108 -11.99191 -11.72336 -10.99583 -10.79820 -10.63353 -10.46546 -10.42813 -9.95010 -9.53407 -8.21639 -6.36263 0.11517 0.32340 1.40921 1.44053 1.51966 1.63677 2.03496 2.39992 2.86351 3.08645 3.10006 3.53528 3.62075 3.86754 3.91857 4.04860 4.08302 4.10693 4.16398 4.45515 4.48625 4.54266 4.61940 4.66118 4.72037 4.77573 4.80613 4.84562 4.87572 5.02510 5.19060 5.27859 5.36340 5.60503 5.76955 5.77447 6.03660 6.11320 6.47329 6.77718 7.00946 7.23852 7.37350 8.83570 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.006907 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.180323 B = 4053.167641 C = 5431.761450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.390 6.390 3 C 0.072 3.928 4 H 0.090 0.910 5 C -0.155 4.155 6 C 0.518 3.482 7 O -0.577 6.577 8 N -0.589 5.589 9 C 0.247 3.753 10 C -0.551 4.551 11 H 0.051 0.949 12 C 0.028 3.972 13 N -0.913 5.913 14 Si 0.952 3.048 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.273 1.273 18 C 0.160 3.840 19 C -0.156 4.156 20 C -0.067 4.067 21 C -0.168 4.168 22 C 0.091 3.909 23 N -0.509 5.509 24 C 0.103 3.897 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.269 0.731 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.166 0.834 38 H 0.187 0.813 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -6.363 -5.110 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.309 6.309 3 C 0.011 3.989 4 H 0.107 0.893 5 C -0.213 4.213 6 C 0.307 3.693 7 O -0.458 6.458 8 N -0.320 5.320 9 C 0.127 3.873 10 C -0.590 4.590 11 H 0.069 0.931 12 C -0.173 4.173 13 N -0.552 5.552 14 Si 0.777 3.223 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.197 1.197 18 C 0.037 3.963 19 C -0.159 4.159 20 C -0.094 4.094 21 C -0.187 4.187 22 C -0.066 4.066 23 N -0.218 5.218 24 C -0.053 4.053 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.183 0.817 38 H 0.204 0.796 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.452 -6.035 -5.268 9.691 hybrid contribution -1.238 -0.127 1.155 1.698 sum 4.214 -6.163 -4.113 8.524 Atomic orbital electron populations 1.23073 0.79137 1.04200 1.00917 1.87910 1.21595 1.26136 1.95225 1.21923 0.93314 0.86174 0.97511 0.89251 1.22104 1.03825 1.01537 0.93834 1.20602 0.87027 0.83350 0.78352 1.90549 1.66230 1.30511 1.58461 1.48144 1.15876 1.08344 1.59615 1.19288 0.91502 0.79702 0.96857 1.21661 1.24589 1.05356 1.07391 0.93090 1.25561 0.97960 0.95229 0.98537 1.69996 1.40913 1.09970 1.34309 0.85651 0.78646 0.78171 0.79814 1.20096 1.20473 1.19738 1.20205 0.79468 1.03713 0.92954 1.21249 0.99164 0.94953 1.00555 1.21750 0.94362 0.99012 0.94242 1.22456 0.98285 0.99778 0.98219 1.23348 0.97608 0.88052 0.97569 1.67730 1.10222 1.36324 1.07515 1.22728 0.92793 0.96278 0.93527 0.94129 0.92362 0.87336 0.89395 0.92089 0.91199 0.95374 0.94518 0.92205 0.88767 0.89913 0.85081 0.81659 0.79599 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 10.82 113.37 1.23 1.85 16 2 O -0.39 -14.60 9.93 -130.47 -1.30 -15.90 16 3 C 0.07 2.77 2.30 29.85 0.07 2.84 16 4 H 0.09 3.71 6.38 -2.39 -0.02 3.69 16 5 C -0.16 -5.15 9.29 71.98 0.67 -4.49 16 6 C 0.52 22.21 6.90 87.66 0.61 22.82 16 7 O -0.58 -26.74 16.06 15.47 0.25 -26.49 16 8 N -0.59 -24.38 2.45 -830.51 -2.04 -26.42 16 9 C 0.25 11.29 4.80 85.64 0.41 11.70 16 10 C -0.55 -27.65 8.68 25.60 0.22 -27.43 16 11 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 12 C 0.03 1.44 5.46 84.66 0.46 1.90 16 13 N -0.91 -48.20 13.29 21.45 0.28 -47.92 16 14 Si 0.95 40.49 29.54 68.60 2.03 42.52 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 C 0.16 5.78 5.58 85.63 0.48 6.26 16 19 C -0.16 -5.14 5.48 -19.77 -0.11 -5.25 16 20 C -0.07 -1.99 9.86 22.47 0.22 -1.77 16 21 C -0.17 -3.98 10.11 22.36 0.23 -3.75 16 22 C 0.09 2.24 11.18 84.69 0.95 3.19 16 23 N -0.51 -15.89 10.36 -195.84 -2.03 -17.92 16 24 C 0.10 3.40 10.86 84.67 0.92 4.32 16 25 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 26 H 0.06 1.38 7.79 -2.38 -0.02 1.36 16 27 H 0.11 2.39 8.14 -2.38 -0.02 2.38 16 28 H 0.09 2.45 7.79 -2.38 -0.02 2.43 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.44 6.18 -2.39 -0.01 2.43 16 31 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 32 H 0.04 1.73 4.81 -2.39 -0.01 1.72 16 33 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.09 3.28 8.02 -2.39 -0.02 3.26 16 35 H 0.08 3.01 7.31 -2.38 -0.02 2.99 16 36 H 0.13 4.03 7.98 -2.91 -0.02 4.01 16 37 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 38 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 39 H 0.15 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -62.38 333.21 4.59 -57.79 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 1.04 Total: 22.15 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.35 Total: 12.18 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -3.78 Total: -92.26 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.05 Total: -42.39 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -62.38 4.59 -57.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127030746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.514 kcal (2) G-P(sol) polarization free energy of solvation -62.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds