Wall clock time and date at job start Tue Mar 31 2020 00:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99671 * 2 1 4 4 C 1.38754 * 120.05978 * 0.20027 * 3 2 1 5 5 C 1.38115 * 119.94234 * 180.27971 * 4 3 2 6 6 C 1.38290 * 120.05791 * 359.76774 * 5 4 3 7 7 C 1.38244 * 120.11180 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.97178 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47284 * 200.01772 * 8 7 6 10 10 C 1.53007 * 109.47249 * 80.01997 * 8 7 6 11 11 N 1.46899 * 109.47379 * 320.02378 * 8 7 6 12 12 C 1.46910 * 110.99973 * 205.00266 * 11 8 7 13 13 C 1.50702 * 109.46811 * 179.97438 * 12 11 8 14 14 O 1.21291 * 119.99978 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99357 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99774 * 179.97438 * 15 13 12 17 17 H 1.08006 * 119.99449 * 0.02562 * 16 15 13 18 18 C 1.38943 * 120.00330 * 179.97438 * 16 15 13 19 19 N 1.31418 * 119.99667 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00355 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47122 * 60.00231 * 20 18 16 22 22 H 1.48502 * 109.47339 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47552 * 300.00401 * 20 18 16 24 24 C 1.38167 * 120.05373 * 0.02562 * 7 6 5 25 25 H 1.09002 * 109.47603 * 300.00651 * 1 2 3 26 26 H 1.09001 * 109.47062 * 60.00447 * 1 2 3 27 27 H 1.08998 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.02374 * 0.02897 * 4 3 2 29 29 H 1.08007 * 119.97042 * 179.75154 * 5 4 3 30 30 H 1.08007 * 119.94201 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.46794 * 300.00075 * 10 8 7 32 32 H 1.08997 * 109.46968 * 59.99913 * 10 8 7 33 33 H 1.08997 * 109.47071 * 179.97438 * 10 8 7 34 34 H 1.00895 * 111.00498 * 81.04175 * 11 8 7 35 35 H 1.09000 * 109.46720 * 299.99166 * 12 11 8 36 36 H 1.08996 * 109.46846 * 59.99564 * 12 11 8 37 37 H 0.96998 * 120.00536 * 359.97438 * 15 13 12 38 38 H 0.96999 * 119.99714 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.02367 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0042 5 6 1.9208 3.6047 -0.0017 6 6 3.3019 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0056 8 6 5.5607 2.5982 -0.0119 9 1 5.9741 1.6523 -0.3619 10 6 6.0622 2.8804 1.4059 11 7 5.9891 3.6811 -0.9073 12 6 7.3492 3.4426 -1.4087 13 6 7.7529 4.5713 -2.3222 14 8 6.9831 5.4841 -2.5349 15 7 8.9688 4.5656 -2.9034 16 6 9.3359 5.5921 -3.7348 17 1 8.6508 6.4053 -3.9236 18 6 10.5897 5.5866 -4.3337 19 7 11.4234 4.5972 -4.1035 20 14 11.0895 6.9847 -5.4670 21 1 11.0558 8.2661 -4.7171 22 1 12.4643 6.7435 -5.9742 23 1 10.1457 7.0560 -6.6114 24 6 3.4311 1.2848 0.0002 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3204 0.0079 29 1 1.3339 4.5114 -0.0024 30 1 3.7922 4.6381 -0.0110 31 1 5.6488 3.8263 1.7559 32 1 5.7444 2.0769 2.0703 33 1 7.1506 2.9386 1.4014 34 1 5.9250 4.5770 -0.4477 35 1 8.0419 3.3892 -0.5688 36 1 7.3735 2.5028 -1.9602 37 1 9.5843 3.8354 -2.7335 38 1 12.2986 4.5932 -4.5219 39 1 4.0207 0.3799 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148346469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:50 Heat of formation + Delta-G solvation = -49.648392 kcal Electronic energy + Delta-G solvation = -20693.311485 eV Core-core repulsion = 17408.114316 eV Total energy + Delta-G solvation = -3285.197168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23967 -38.56607 -37.79820 -35.77922 -33.87516 -31.68040 -31.15266 -30.43553 -28.88434 -27.43227 -26.34243 -24.22572 -23.02778 -22.50493 -20.41624 -19.28231 -17.99206 -17.73034 -16.34132 -15.99491 -15.97256 -15.86538 -15.25677 -14.70876 -14.54551 -14.08507 -13.90971 -13.61555 -13.44752 -13.27573 -13.00452 -12.53091 -12.41053 -12.14121 -12.00677 -11.54795 -11.52581 -11.35916 -11.22309 -11.06926 -10.99461 -10.70359 -10.42619 -10.19286 -9.47839 -8.84298 -8.44961 -8.18416 -8.01576 -7.93214 -6.39512 -3.80282 1.32258 1.49378 3.12436 3.21790 3.27233 3.31807 3.75344 3.93764 4.14209 4.39393 4.70770 4.75076 4.91183 4.93757 5.03774 5.08732 5.17610 5.22887 5.24860 5.30130 5.43519 5.48130 5.52034 5.70624 5.80075 5.87250 5.99963 6.03962 6.10579 6.26930 6.29151 6.49045 6.64092 6.76485 7.25909 7.33144 7.57131 7.67888 8.08494 8.63792 9.20079 9.56806 10.08431 10.78257 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034701 B = 0.002903 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.708871 B = 9641.419313 C = 9776.422967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.022 4.022 8 C 0.120 3.880 9 H 0.088 0.912 10 C -0.179 4.179 11 N -0.660 5.660 12 C 0.050 3.950 13 C 0.442 3.558 14 O -0.583 6.583 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.148 4.148 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.350 0.650 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 -8.645 11.499 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.147 4.147 7 C -0.023 4.023 8 C 0.009 3.991 9 H 0.106 0.894 10 C -0.237 4.237 11 N -0.292 5.292 12 C -0.082 4.082 13 C 0.227 3.773 14 O -0.467 6.467 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.167 4.167 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.796 -8.510 10.709 21.662 hybrid contribution 0.945 0.501 0.234 1.095 sum -15.851 -8.009 10.943 20.860 Atomic orbital electron populations 1.23009 0.78705 1.03647 1.01258 1.86053 1.21129 1.27206 1.89045 1.18916 0.92203 0.83974 0.97298 1.21155 0.99655 0.92524 1.09996 1.20925 0.94716 0.96820 0.97625 1.20913 0.93298 0.98618 1.01919 1.19565 0.95019 0.92085 0.95639 1.20480 0.90693 0.96559 0.91348 0.89394 1.22503 1.01566 1.02442 0.97233 1.60160 1.24224 1.04641 1.40131 1.21714 0.89257 0.99395 0.97858 1.19802 0.83384 0.88573 0.85532 1.90521 1.52112 1.38330 1.65743 1.41855 1.13468 1.23133 1.41630 1.19653 0.99652 1.01909 1.21653 0.87994 1.25257 0.95790 0.98304 0.98612 1.69608 1.08601 1.31582 1.44615 0.85918 0.77442 0.80730 0.80122 1.19930 1.20996 1.19891 1.20204 0.91230 0.98067 1.07226 0.92836 0.92730 0.88470 0.85937 0.85948 0.85579 0.92080 0.91929 0.91973 0.82953 0.93702 0.89523 0.77453 0.91843 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.67 10.50 -19.44 -0.20 -3.88 16 3 C 0.12 1.50 6.69 -39.22 -0.26 1.24 16 4 C -0.21 -2.41 9.04 -39.44 -0.36 -2.77 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.36 16 6 C -0.13 -1.69 9.32 -39.56 -0.37 -2.06 16 7 C -0.02 -0.29 4.95 -104.65 -0.52 -0.81 16 8 C 0.12 1.55 2.79 -68.86 -0.19 1.36 16 9 H 0.09 1.09 7.66 -51.93 -0.40 0.69 16 10 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 11 N -0.66 -10.78 5.33 -109.21 -0.58 -11.37 16 12 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 13 C 0.44 10.51 7.82 -10.98 -0.09 10.43 16 14 O -0.58 -15.95 15.78 5.55 0.09 -15.87 16 15 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 16 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 17 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 20 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 C -0.15 -1.90 9.61 -39.43 -0.38 -2.28 16 25 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 26 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.12 1.08 6.30 -52.49 -0.33 0.75 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.13 1.65 7.24 -52.48 -0.38 1.27 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 34 H 0.35 5.82 7.52 -39.29 -0.30 5.53 16 35 H 0.05 0.71 7.44 -51.93 -0.39 0.32 16 36 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 37 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -32.28 332.02 -6.89 -39.16 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.34 Total: 13.12 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.50 Total: -3.90 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.08 Total: -49.85 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.12 Total: -19.74 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.28 -6.89 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148346469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.484 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds