Wall clock time and date at job start Tue Mar 31 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47048 * 240.00436 * 2 1 3 5 5 C 1.52999 * 109.46967 * 175.00087 * 4 2 1 6 6 O 1.42905 * 109.47138 * 180.02562 * 5 4 2 7 7 N 1.46490 * 109.47087 * 120.00347 * 2 1 3 8 8 C 1.34783 * 120.00331 * 274.99858 * 7 2 1 9 9 O 1.21580 * 119.99315 * 0.02562 * 8 7 2 10 10 N 1.34775 * 119.99992 * 179.97438 * 8 7 2 11 11 C 1.39244 * 119.99404 * 174.58590 * 10 8 7 12 12 C 1.39483 * 119.83267 * 326.69581 * 11 10 8 13 13 C 1.36376 * 120.16431 * 179.75862 * 12 11 10 14 14 C 1.40870 * 119.83104 * 0.51949 * 13 12 11 15 15 C 1.41155 * 120.16849 * 179.71319 * 14 13 12 16 16 H 1.08000 * 120.00425 * 156.07603 * 15 14 13 17 17 C 1.39897 * 119.99844 * 336.07797 * 15 14 13 18 18 N 1.30880 * 119.99951 * 340.64135 * 17 15 14 19 19 Si 1.86800 * 120.00073 * 160.63741 * 17 15 14 20 20 H 1.48499 * 109.47103 * 94.72831 * 19 17 15 21 21 H 1.48504 * 109.47313 * 214.73173 * 19 17 15 22 22 H 1.48503 * 109.46897 * 334.72768 * 19 17 15 23 23 C 1.40865 * 119.67015 * 359.73802 * 14 13 12 24 24 C 1.36376 * 119.82945 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47273 * 299.99471 * 1 2 3 27 27 H 1.09005 * 109.47053 * 59.99629 * 1 2 3 28 28 H 1.09001 * 109.47050 * 294.99942 * 4 2 1 29 29 H 1.09001 * 109.47552 * 55.00038 * 4 2 1 30 30 H 1.09001 * 109.47117 * 299.99814 * 5 4 2 31 31 H 1.08996 * 109.47693 * 59.99802 * 5 4 2 32 32 H 0.96701 * 114.00147 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00598 * 94.72656 * 7 2 1 34 34 H 0.96993 * 120.00299 * 354.58472 * 10 8 7 35 35 H 1.07991 * 119.91882 * 0.02878 * 12 11 10 36 36 H 1.08001 * 120.08890 * 180.25529 * 13 12 11 37 37 H 0.97005 * 119.99733 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.08651 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.91529 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 8 4.0411 -1.2863 -2.4809 7 7 2.0183 -0.6906 1.1960 8 6 2.1470 -0.0184 2.3571 9 8 1.8575 1.1612 2.4118 10 7 2.5958 -0.6540 3.4576 11 6 2.8361 0.0635 4.6265 12 6 3.2943 1.3788 4.5516 13 6 3.5272 2.0894 5.6920 14 6 3.3143 1.4882 6.9480 15 6 3.5589 2.2151 8.1331 16 1 3.0583 1.9386 9.0492 17 6 4.4497 3.2937 8.1207 18 7 5.3283 3.4058 7.1572 19 14 4.3850 4.5741 9.4794 20 1 5.3683 4.2247 10.5359 21 1 4.7148 5.9087 8.9179 22 1 3.0204 4.6066 10.0643 23 6 2.8567 0.1576 7.0156 24 6 2.6236 -0.5387 5.8665 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1371 30 1 3.8531 0.4371 -1.3573 31 1 3.9995 -1.0727 -0.4261 32 1 5.0019 -1.2580 -2.5867 33 1 2.2452 -1.6328 1.1535 34 1 2.7513 -1.6111 3.4354 35 1 3.4609 1.8371 3.5880 36 1 3.8780 3.1091 5.6325 37 1 5.9462 4.1535 7.1489 38 1 2.6916 -0.3101 7.9750 39 1 2.2731 -1.5591 5.9167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151709696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:41 Heat of formation + Delta-G solvation = -67.837434 kcal Electronic energy + Delta-G solvation = -21022.943485 eV Core-core repulsion = 17736.957580 eV Total energy + Delta-G solvation = -3285.985904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00778 -37.93923 -37.14047 -35.68326 -34.31908 -33.01410 -31.44470 -29.43597 -29.16724 -28.61636 -24.95655 -23.48306 -21.90849 -21.22102 -20.65668 -19.98047 -18.05438 -17.55787 -17.26949 -16.51807 -15.84629 -15.26166 -14.98102 -14.68572 -14.36941 -14.05025 -13.89093 -13.26983 -13.05526 -12.66610 -12.58608 -12.17125 -12.08116 -11.89730 -11.79490 -11.37909 -11.24833 -11.10979 -11.05465 -11.00474 -10.63934 -10.21810 -9.97913 -9.66749 -9.48579 -9.10195 -8.90175 -8.85593 -7.47927 -6.95457 -6.70576 -4.24658 2.70836 3.04720 3.09450 3.10914 3.14423 3.20614 3.75523 3.87164 3.95889 4.64459 4.67725 4.77760 4.78814 4.99684 5.27301 5.31020 5.40310 5.59904 5.69289 5.74577 5.76590 5.98354 6.18346 6.20034 6.41515 6.66843 6.86162 6.86711 7.08453 7.14171 7.33539 7.34468 7.39221 7.65410 7.89813 8.04375 8.09585 8.30402 8.53778 8.66813 8.92357 8.96781 9.16256 10.20342 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029219 B = 0.003351 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.045430 B = 8353.310599 C = 8610.853033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.164 3.836 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.074 3.926 6 O -0.579 6.579 7 N -0.750 5.750 8 C 0.694 3.306 9 O -0.576 6.576 10 N -0.667 5.667 11 C 0.013 3.987 12 C -0.086 4.086 13 C -0.156 4.156 14 C 0.104 3.896 15 C -0.460 4.460 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.790 5.790 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.216 4.216 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.380 0.620 33 H 0.391 0.609 34 H 0.389 0.611 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.280 0.720 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -7.742 -13.330 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.004 4.004 6 O -0.384 6.384 7 N -0.407 5.407 8 C 0.395 3.605 9 O -0.453 6.453 10 N -0.313 5.313 11 C -0.079 4.079 12 C -0.106 4.106 13 C -0.176 4.176 14 C 0.101 3.899 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.415 5.415 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.236 4.236 24 C -0.128 4.128 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.227 0.773 33 H 0.224 0.776 34 H 0.222 0.778 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.237 -6.588 -13.459 15.331 hybrid contribution 0.861 -0.281 0.668 1.125 sum -2.376 -6.869 -12.792 14.712 Atomic orbital electron populations 1.22183 0.95183 1.01996 1.02762 1.20652 0.93966 0.97321 0.82221 0.89193 1.21817 0.94393 1.02049 0.98042 1.22207 0.94891 0.96035 0.87257 1.86430 1.27359 1.78872 1.45775 1.45280 1.73074 1.13294 1.09082 1.16015 0.78668 0.85468 0.80354 1.90921 1.55996 1.14319 1.84063 1.42119 1.68571 1.10389 1.10212 1.16962 1.13413 0.94442 0.83117 1.20430 0.98745 0.93264 0.98188 1.20958 1.05363 1.00077 0.91160 1.17640 0.88758 0.90252 0.93208 1.19523 1.21828 1.11131 0.96442 0.90435 1.25917 0.93530 0.98024 0.96741 1.69864 1.12651 1.28040 1.30965 0.86344 0.79776 0.79838 0.81029 1.19638 1.20035 1.18409 1.20500 1.12308 0.95169 0.95628 1.19983 1.02877 0.98172 0.91727 0.92653 0.91482 0.91835 0.90776 0.89726 0.93383 0.93266 0.77299 0.77596 0.77777 0.87990 0.86378 0.90893 0.88699 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.16 1.84 2.57 -67.94 -0.17 1.66 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 4 C -0.12 -1.12 5.12 -26.73 -0.14 -1.25 16 5 C 0.07 0.69 6.93 37.16 0.26 0.94 16 6 O -0.58 -5.38 13.66 -35.23 -0.48 -5.86 16 7 N -0.75 -9.28 4.53 -58.68 -0.27 -9.55 16 8 C 0.69 12.30 8.25 -86.91 -0.72 11.59 16 9 O -0.58 -12.83 13.66 5.29 0.07 -12.75 16 10 N -0.67 -11.85 5.32 -14.10 -0.07 -11.92 16 11 C 0.01 0.30 6.29 -83.57 -0.53 -0.22 16 12 C -0.09 -2.18 8.57 -39.79 -0.34 -2.52 16 13 C -0.16 -4.22 8.65 -39.26 -0.34 -4.56 16 14 C 0.10 2.82 5.58 -106.80 -0.60 2.23 16 15 C -0.46 -12.32 9.03 -37.85 -0.34 -12.67 16 16 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 17 C 0.08 1.93 5.11 -17.34 -0.09 1.84 16 18 N -0.79 -20.69 11.00 55.55 0.61 -20.08 16 19 Si 0.91 18.85 29.60 -169.99 -5.03 13.81 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.22 -5.30 9.74 -39.26 -0.38 -5.68 16 24 C -0.11 -2.38 9.89 -39.79 -0.39 -2.77 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 32 H 0.38 1.96 9.12 45.56 0.42 2.38 16 33 H 0.39 3.69 8.63 -40.82 -0.35 3.34 16 34 H 0.39 5.37 8.83 -40.82 -0.36 5.01 16 35 H 0.10 2.60 6.39 -52.49 -0.34 2.26 16 36 H 0.12 3.32 6.17 -52.49 -0.32 3.00 16 37 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -32.19 329.95 -8.31 -40.50 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -4.68 Total: 13.67 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -3.43 Total: -12.80 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.27 Total: -41.55 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.41 Total: -18.61 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.19 -8.31 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151709696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.334 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds