Wall clock time and date at job start Tue Mar 31 2020 00:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46699 * 2 1 4 4 N 1.46889 * 109.47174 * 120.00681 * 2 1 3 5 5 C 1.46899 * 111.00018 * 275.00074 * 4 2 1 6 6 C 1.53000 * 109.47270 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47254 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47112 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00049 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99780 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99838 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99899 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47179 * 90.00096 * 12 10 8 14 14 H 1.48509 * 109.46808 * 209.99931 * 12 10 8 15 15 H 1.48500 * 109.47249 * 329.99877 * 12 10 8 16 16 C 1.50697 * 109.46917 * 240.00947 * 2 1 3 17 17 C 1.38265 * 119.99888 * 279.99641 * 16 2 1 18 18 C 1.38208 * 120.00352 * 179.70542 * 17 16 2 19 19 C 1.38257 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.38215 * 120.00125 * 0.02562 * 19 18 17 21 21 N 1.48024 * 120.00214 * 179.97438 * 20 19 18 22 22 O 1.21799 * 119.99792 * 0.02562 * 21 20 19 23 23 O 1.21803 * 119.99647 * 180.02562 * 21 20 19 24 24 C 1.38215 * 120.00726 * 99.72597 * 16 2 1 25 25 H 1.09002 * 109.47085 * 59.99288 * 1 2 3 26 26 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47105 * 299.99520 * 1 2 3 28 28 H 1.00901 * 111.00522 * 38.95065 * 4 2 1 29 29 H 1.09006 * 109.47162 * 300.00113 * 5 4 2 30 30 H 1.09001 * 109.47809 * 59.99900 * 5 4 2 31 31 H 1.08998 * 109.46832 * 299.99700 * 6 5 4 32 32 H 1.08999 * 109.47372 * 60.00027 * 6 5 4 33 33 H 1.08993 * 109.46981 * 300.00167 * 7 6 5 34 34 H 1.08999 * 109.46787 * 59.99819 * 7 6 5 35 35 H 0.96995 * 119.99501 * 180.02562 * 11 10 8 36 36 H 1.08000 * 119.99335 * 359.72717 * 17 16 2 37 37 H 1.07992 * 120.00457 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.00097 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.99268 * 0.24980 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0824 0.2224 2.3468 6 6 2.5962 -0.5332 3.5740 7 6 2.6622 0.4199 4.7691 8 6 3.1677 -0.3245 5.9780 9 1 3.4173 -1.3724 5.9015 10 6 3.3114 0.3324 7.1817 11 7 3.7530 -0.3171 8.2366 12 14 2.8789 2.1448 7.3142 13 1 1.4495 2.2864 7.6911 14 1 3.7298 2.7822 8.3511 15 1 3.1137 2.8066 6.0057 16 6 2.0323 -0.7102 -1.2306 17 6 2.0667 -2.0920 -1.2656 18 6 2.5216 -2.7435 -2.3964 19 6 2.9418 -2.0135 -3.4928 20 6 2.9074 -0.6323 -3.4579 21 7 3.3578 0.1493 -4.6315 22 8 3.7582 -0.4249 -5.6283 23 8 3.3279 1.3665 -4.6004 24 6 2.4533 0.0195 -2.3263 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.4496 -1.4980 1.4099 29 1 2.7588 1.0460 2.1182 30 1 1.0871 0.6161 2.5526 31 1 1.9201 -1.3570 3.8028 32 1 3.5917 -0.9266 3.3681 33 1 3.3384 1.2435 4.5401 34 1 1.6669 0.8136 4.9752 35 1 3.8538 0.1449 9.0835 36 1 1.7378 -2.6621 -0.4094 37 1 2.5481 -3.8227 -2.4240 38 1 3.2969 -2.5226 -4.3767 39 1 2.4261 1.0988 -2.2991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173382661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:33 Heat of formation + Delta-G solvation = 6.167945 kcal Electronic energy + Delta-G solvation = -20464.343000 eV Core-core repulsion = 17181.566210 eV Total energy + Delta-G solvation = -3282.776790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.38867 -40.11310 -37.30785 -36.76747 -34.34707 -32.52996 -32.18335 -30.99832 -29.25139 -26.87358 -26.36429 -24.14831 -23.05371 -22.24642 -21.27228 -20.22860 -18.94315 -18.78913 -17.73540 -17.01705 -16.76201 -16.03770 -15.65678 -15.16062 -14.68345 -14.42503 -14.09291 -13.89889 -13.54214 -12.98700 -12.79151 -12.62123 -12.49080 -12.17325 -11.89546 -11.78784 -11.73643 -11.37124 -11.35393 -11.33975 -11.03987 -10.86010 -10.03609 -9.89711 -9.83006 -9.71275 -9.47381 -9.23139 -8.58018 -8.51602 -6.08134 -4.06409 -0.40059 0.59686 1.12036 1.17034 2.95261 3.26684 3.34788 3.37707 3.80675 4.11524 4.21517 4.41257 4.43019 4.54652 4.61722 4.65693 4.87190 4.97532 5.13835 5.25596 5.31899 5.36944 5.44165 5.55847 5.58859 5.65330 5.78975 5.81330 5.96562 6.04365 6.22395 6.41727 6.45780 6.81643 6.97470 7.25681 7.27201 7.38856 7.41603 7.75447 8.50068 8.96912 9.54263 11.05401 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002790 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.875535 B =10032.649400 C =10281.058470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 H 0.093 0.907 4 N -0.683 5.683 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.012 4.012 8 C -0.521 4.521 9 H 0.071 0.929 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.059 4.059 17 C -0.045 4.045 18 C -0.117 4.117 19 C -0.062 4.062 20 C -0.045 4.045 21 N 0.030 4.970 22 O -0.165 6.165 23 O -0.163 6.163 24 C -0.054 4.054 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.341 0.659 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.009 0.991 35 H 0.263 0.737 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -2.782 -23.195 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.008 3.992 3 H 0.112 0.888 4 N -0.313 5.313 5 C -0.072 4.072 6 C -0.137 4.137 7 C -0.050 4.050 8 C -0.559 4.559 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.190 1.190 16 C -0.060 4.060 17 C -0.064 4.064 18 C -0.135 4.135 19 C -0.082 4.082 20 C -0.128 4.128 21 N 0.549 4.451 22 O -0.380 6.380 23 O -0.378 6.378 24 C -0.073 4.073 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.160 0.840 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.232 -3.044 -22.591 23.632 hybrid contribution -0.961 1.224 0.144 1.563 sum -7.193 -1.819 -22.447 23.641 Atomic orbital electron populations 1.22507 0.95568 1.02737 1.03011 1.20482 0.93064 0.97777 0.87921 0.88844 1.60625 1.56677 1.10210 1.03837 1.22221 0.99399 0.95457 0.90082 1.21449 1.00884 0.98626 0.92783 1.19537 0.96198 0.95491 0.93815 1.21132 1.43737 0.98287 0.92707 0.91042 1.25048 0.94658 0.98125 0.95748 1.69916 1.46765 1.36663 1.00929 0.86767 0.78493 0.85864 0.78066 1.20362 1.21362 1.19030 1.19899 0.97892 0.93768 0.94444 1.21485 0.93248 0.94097 0.97550 1.21235 0.99180 1.01015 0.92119 1.21049 0.96009 0.90735 1.00374 1.21052 1.11478 0.92086 0.88145 1.43660 0.98026 1.01357 1.02072 1.94527 1.48311 1.72742 1.22435 1.94548 1.58869 0.95660 1.88755 1.20891 0.94267 1.02012 0.90150 0.91862 0.92014 0.91357 0.84028 0.91230 0.95272 0.92980 0.91884 0.96597 0.97274 0.92719 0.83881 0.83525 0.83179 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.14 37.16 0.34 -1.05 16 2 C 0.12 1.07 2.79 -68.87 -0.19 0.88 16 3 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 4 N -0.68 -7.63 5.70 -107.96 -0.62 -8.25 16 5 C 0.06 0.80 5.48 -3.82 -0.02 0.78 16 6 C -0.10 -1.82 5.41 -26.73 -0.14 -1.96 16 7 C -0.01 -0.29 4.04 -27.88 -0.11 -0.40 16 8 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 9 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 10 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 11 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 12 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 16 C -0.06 -0.51 4.96 -104.62 -0.52 -1.03 16 17 C -0.05 -0.34 9.33 -39.58 -0.37 -0.71 16 18 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 19 C -0.06 -0.50 9.56 -39.58 -0.38 -0.88 16 20 C -0.04 -0.46 6.85 -79.95 -0.55 -1.00 16 21 N 0.03 0.37 4.45 33.96 0.15 0.52 16 22 O -0.16 -2.12 18.45 -29.46 -0.54 -2.66 16 23 O -0.16 -2.16 18.45 -29.46 -0.54 -2.70 16 24 C -0.05 -0.51 9.18 -39.58 -0.36 -0.87 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.07 0.57 7.45 -51.93 -0.39 0.19 16 28 H 0.34 3.38 7.82 -39.29 -0.31 3.08 16 29 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 30 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.14 0.88 7.24 -52.49 -0.38 0.50 16 37 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.15 1.00 7.61 -52.49 -0.40 0.60 16 39 H 0.15 1.31 7.59 -52.49 -0.40 0.91 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -31.73 333.70 -9.09 -40.82 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.54 Total: -2.02 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -3.14 Total: -20.58 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.31 Total: -34.66 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -1.09 Total: -5.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.73 -9.09 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173382661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.992 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds