Wall clock time and date at job start Tue Mar 31 2020 00:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46699 * 2 1 4 4 N 1.46889 * 109.47174 * 120.00681 * 2 1 3 5 5 C 1.46899 * 111.00018 * 275.00074 * 4 2 1 6 6 C 1.53000 * 109.47270 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47254 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47112 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00049 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99780 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99838 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99899 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47179 * 90.00096 * 12 10 8 14 14 H 1.48509 * 109.46808 * 209.99931 * 12 10 8 15 15 H 1.48500 * 109.47249 * 329.99877 * 12 10 8 16 16 C 1.50697 * 109.46917 * 240.00947 * 2 1 3 17 17 C 1.38265 * 119.99888 * 279.99641 * 16 2 1 18 18 C 1.38208 * 120.00352 * 179.70542 * 17 16 2 19 19 C 1.38257 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.38215 * 120.00125 * 0.02562 * 19 18 17 21 21 N 1.48024 * 120.00214 * 179.97438 * 20 19 18 22 22 O 1.21799 * 119.99792 * 0.02562 * 21 20 19 23 23 O 1.21803 * 119.99647 * 180.02562 * 21 20 19 24 24 C 1.38215 * 120.00726 * 99.72597 * 16 2 1 25 25 H 1.09002 * 109.47085 * 59.99288 * 1 2 3 26 26 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47105 * 299.99520 * 1 2 3 28 28 H 1.00901 * 111.00522 * 38.95065 * 4 2 1 29 29 H 1.09006 * 109.47162 * 300.00113 * 5 4 2 30 30 H 1.09001 * 109.47809 * 59.99900 * 5 4 2 31 31 H 1.08998 * 109.46832 * 299.99700 * 6 5 4 32 32 H 1.08999 * 109.47372 * 60.00027 * 6 5 4 33 33 H 1.08993 * 109.46981 * 300.00167 * 7 6 5 34 34 H 1.08999 * 109.46787 * 59.99819 * 7 6 5 35 35 H 0.96995 * 119.99501 * 180.02562 * 11 10 8 36 36 H 1.08000 * 119.99335 * 359.72717 * 17 16 2 37 37 H 1.07992 * 120.00457 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.00097 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.99268 * 0.24980 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0824 0.2224 2.3468 6 6 2.5962 -0.5332 3.5740 7 6 2.6622 0.4199 4.7691 8 6 3.1677 -0.3245 5.9780 9 1 3.4173 -1.3724 5.9015 10 6 3.3114 0.3324 7.1817 11 7 3.7530 -0.3171 8.2366 12 14 2.8789 2.1448 7.3142 13 1 1.4495 2.2864 7.6911 14 1 3.7298 2.7822 8.3511 15 1 3.1137 2.8066 6.0057 16 6 2.0323 -0.7102 -1.2306 17 6 2.0667 -2.0920 -1.2656 18 6 2.5216 -2.7435 -2.3964 19 6 2.9418 -2.0135 -3.4928 20 6 2.9074 -0.6323 -3.4579 21 7 3.3578 0.1493 -4.6315 22 8 3.7582 -0.4249 -5.6283 23 8 3.3279 1.3665 -4.6004 24 6 2.4533 0.0195 -2.3263 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.4496 -1.4980 1.4099 29 1 2.7588 1.0460 2.1182 30 1 1.0871 0.6161 2.5526 31 1 1.9201 -1.3570 3.8028 32 1 3.5917 -0.9266 3.3681 33 1 3.3384 1.2435 4.5401 34 1 1.6669 0.8136 4.9752 35 1 3.8538 0.1449 9.0835 36 1 1.7378 -2.6621 -0.4094 37 1 2.5481 -3.8227 -2.4240 38 1 3.2969 -2.5226 -4.3767 39 1 2.4261 1.0988 -2.2991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173382661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:32 Heat of formation + Delta-G solvation = -12.442833 kcal Electronic energy + Delta-G solvation = -20465.150024 eV Core-core repulsion = 17181.566210 eV Total energy + Delta-G solvation = -3283.583814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.27007 -40.79667 -38.21921 -37.70467 -35.88955 -34.19189 -32.85423 -32.24703 -30.19153 -27.97738 -27.56435 -25.03922 -23.89862 -23.50587 -22.14469 -21.73830 -19.80651 -19.64431 -18.90759 -18.63152 -17.57882 -16.88030 -16.56183 -16.29583 -16.09698 -15.34295 -15.12250 -14.78422 -14.70012 -14.41974 -13.75817 -13.69104 -13.49349 -13.26035 -13.09284 -12.75687 -12.74108 -12.59045 -12.44618 -12.34070 -12.24326 -12.04139 -11.81034 -11.49389 -11.48061 -11.25508 -10.75962 -10.52405 -10.16883 -9.40297 -8.29226 -6.33292 -1.23045 -0.01463 0.32811 0.37158 1.35786 1.38473 1.50050 2.31851 2.36401 3.01859 3.06483 3.46087 3.50903 3.83332 3.92181 3.98659 4.00834 4.19933 4.24722 4.34668 4.39903 4.56406 4.68580 4.71472 4.77748 4.86419 4.94154 5.00173 5.04473 5.12399 5.13794 5.19929 5.27283 5.54100 5.54634 5.63081 5.67803 6.02016 6.29846 6.45130 6.45398 6.75802 7.31564 8.87750 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.002790 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.875535 B =10032.649400 C =10281.058470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 H 0.089 0.911 4 N -0.686 5.686 5 C 0.071 3.929 6 C -0.090 4.090 7 C -0.012 4.012 8 C -0.532 4.532 9 H 0.030 0.970 10 C 0.000 4.000 11 N -0.954 5.954 12 Si 0.953 3.047 13 H -0.265 1.265 14 H -0.287 1.287 15 H -0.245 1.245 16 C -0.064 4.064 17 C -0.043 4.043 18 C -0.106 4.106 19 C -0.062 4.062 20 C -0.064 4.064 21 N 0.032 4.968 22 O -0.174 6.174 23 O -0.194 6.194 24 C -0.061 4.061 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.350 0.650 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.161 0.839 37 H 0.181 0.819 38 H 0.164 0.836 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 -2.636 -24.210 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.107 0.893 4 N -0.317 5.317 5 C -0.058 4.058 6 C -0.129 4.129 7 C -0.050 4.050 8 C -0.570 4.570 9 H 0.049 0.951 10 C -0.196 4.196 11 N -0.595 5.595 12 Si 0.776 3.224 13 H -0.190 1.190 14 H -0.213 1.213 15 H -0.168 1.168 16 C -0.066 4.066 17 C -0.061 4.061 18 C -0.124 4.124 19 C -0.081 4.081 20 C -0.147 4.147 21 N 0.545 4.455 22 O -0.390 6.390 23 O -0.404 6.404 24 C -0.080 4.080 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.181 0.819 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.571 -2.867 -23.641 24.988 hybrid contribution -0.528 0.982 0.486 1.217 sum -8.099 -1.885 -23.155 24.602 Atomic orbital electron populations 1.22453 0.94262 1.03505 1.03100 1.20445 0.94030 0.97382 0.86977 0.89289 1.60492 1.57668 1.10163 1.03413 1.21902 0.99597 0.95066 0.89235 1.21255 1.00403 0.98043 0.93150 1.19501 0.96187 0.95862 0.93406 1.21544 1.43407 0.97073 0.95023 0.95120 1.26075 0.94593 1.03687 0.95262 1.70079 1.48593 1.39046 1.01762 0.85621 0.78670 0.79210 0.78902 1.19006 1.21283 1.16847 1.19866 0.98391 0.94387 0.93917 1.21792 0.92255 0.93657 0.98378 1.21606 0.97444 1.02531 0.90850 1.21360 0.95413 0.89855 1.01454 1.21247 1.13134 0.92779 0.87506 1.44000 0.97551 1.01334 1.02570 1.94496 1.48528 1.72592 1.23336 1.94534 1.60192 0.96513 1.89201 1.20942 0.94549 1.02220 0.90312 0.91169 0.90928 0.91856 0.83014 0.91490 0.94175 0.93007 0.93417 0.96407 0.96165 0.92564 0.82190 0.80193 0.81888 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.14 71.98 0.66 -1.56 16 2 C 0.12 1.93 2.79 44.17 0.12 2.05 16 3 H 0.09 1.51 7.66 -2.39 -0.02 1.49 16 4 N -0.69 -13.61 5.70 -495.47 -2.83 -16.43 16 5 C 0.07 1.84 5.48 86.30 0.47 2.31 16 6 C -0.09 -3.21 5.41 30.60 0.17 -3.04 16 7 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 8 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 9 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 10 C 0.00 0.01 5.47 84.65 0.46 0.47 16 11 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 12 Si 0.95 43.62 27.47 68.60 1.88 45.51 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 16 C -0.06 -0.97 4.96 -19.86 -0.10 -1.07 16 17 C -0.04 -0.50 9.33 22.27 0.21 -0.29 16 18 C -0.11 -1.02 10.05 22.27 0.22 -0.80 16 19 C -0.06 -0.86 9.56 22.27 0.21 -0.64 16 20 C -0.06 -1.23 6.85 36.37 0.25 -0.98 16 21 N 0.03 0.79 4.45 -46.46 -0.21 0.58 16 22 O -0.17 -4.44 18.45 18.89 0.35 -4.09 16 23 O -0.19 -5.32 18.45 18.88 0.35 -4.97 16 24 C -0.06 -1.07 9.18 22.27 0.20 -0.87 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 27 H 0.06 0.89 7.45 -2.39 -0.02 0.87 16 28 H 0.35 5.91 7.82 -89.69 -0.70 5.21 16 29 H 0.07 1.79 8.06 -2.38 -0.02 1.77 16 30 H 0.04 0.97 7.44 -2.39 -0.02 0.95 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 34 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.16 1.34 7.24 -2.91 -0.02 1.32 16 37 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 38 H 0.16 1.80 7.61 -2.91 -0.02 1.77 16 39 H 0.15 2.57 7.59 -2.91 -0.02 2.55 16 Total: -1.00 -70.21 333.70 3.39 -66.82 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.29 Total: 7.03 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.25 Total: -34.93 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -2.73 Total: -75.37 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.70 Total: -9.06 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -70.21 3.39 -66.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173382661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.377 kcal (2) G-P(sol) polarization free energy of solvation -70.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds