Wall clock time and date at job start Tue Mar 31 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.38020 * 119.51251 * 84.99940 * 4 2 1 6 6 C 1.39931 * 119.12855 * 179.97438 * 5 4 2 7 7 C 1.48164 * 120.88928 * 180.02562 * 6 5 4 8 8 O 1.21510 * 119.99932 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99816 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46948 * 34.99961 * 10 9 7 12 12 C 1.53002 * 109.47453 * 274.99775 * 10 9 7 13 13 C 1.50700 * 109.47149 * 154.99553 * 10 9 7 14 14 H 1.08002 * 120.00130 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00144 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00161 * 0.02562 * 15 13 10 17 17 Si 1.86805 * 119.99945 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47214 * 60.00154 * 17 15 13 19 19 H 1.48503 * 109.46812 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47168 * 299.99809 * 17 15 13 21 21 C 1.39612 * 118.21837 * 359.97438 * 6 5 4 22 22 C 1.38850 * 118.94582 * 0.02562 * 21 6 5 23 23 O 1.35689 * 119.61540 * 179.97438 * 22 21 6 24 24 N 1.31877 * 119.50720 * 264.72739 * 4 2 1 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.07997 * 120.43833 * 359.97438 * 5 4 2 33 33 H 0.97001 * 120.00522 * 359.97438 * 9 7 6 34 34 H 1.08990 * 109.46717 * 300.00256 * 12 10 9 35 35 H 1.08997 * 109.46641 * 60.00160 * 12 10 9 36 36 H 1.08999 * 109.46709 * 179.97438 * 12 10 9 37 37 H 0.96999 * 120.00191 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.52359 * 180.02562 * 21 6 5 39 39 H 0.96691 * 113.99993 * 90.00492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.1603 -0.0120 -2.4141 6 6 2.6280 -0.6793 -3.5516 7 6 2.7809 0.0325 -4.8421 8 8 2.4982 1.2115 -4.9228 9 7 3.2335 -0.6278 -5.9263 10 6 3.3842 0.0759 -7.2024 11 1 3.6985 1.1029 -7.0161 12 6 2.0461 0.0787 -7.9444 13 6 4.4226 -0.6228 -8.0418 14 1 4.9202 -1.5032 -7.6629 15 6 4.7366 -0.1387 -9.2940 16 7 4.1302 0.9331 -9.7558 17 14 6.0232 -1.0053 -10.3348 18 1 5.5948 -2.4044 -10.5881 19 1 6.1760 -0.2919 -11.6283 20 1 7.3222 -1.0079 -9.6151 21 6 2.9478 -2.0335 -3.4377 22 6 2.7896 -2.6603 -2.2089 23 8 3.0958 -3.9762 -2.0830 24 7 2.3483 -1.9887 -1.1591 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.9028 1.0358 -2.4618 33 1 3.4595 -1.5689 -5.8618 34 1 1.7319 -0.9482 -8.1306 35 1 1.2951 0.5841 -7.3373 36 1 2.1582 0.6027 -8.8936 37 1 4.3514 1.2739 -10.6366 38 1 3.3124 -2.5848 -4.2919 39 1 4.0140 -4.1439 -1.8307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180988361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:06 Heat of formation + Delta-G solvation = -80.521385 kcal Electronic energy + Delta-G solvation = -21324.313727 eV Core-core repulsion = 18037.777805 eV Total energy + Delta-G solvation = -3286.535922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98618 -40.39503 -38.53272 -36.83322 -36.06153 -34.52509 -33.63286 -30.98542 -30.38054 -28.05326 -27.37837 -25.92157 -25.12051 -23.05137 -22.10742 -21.04122 -19.75045 -18.79314 -18.16914 -17.83691 -17.03547 -16.74480 -16.57824 -15.96866 -15.89970 -15.66534 -15.07867 -14.83439 -14.58477 -14.44172 -13.78573 -13.66694 -13.28247 -13.05130 -12.91611 -12.86585 -12.84054 -12.75915 -12.40230 -12.30376 -12.17768 -12.07259 -11.79964 -11.28772 -11.16876 -11.02482 -10.62597 -10.51648 -9.93028 -9.89466 -8.19486 -6.37586 -0.45075 -0.15214 1.45612 1.47352 1.55213 1.77685 2.17449 2.41618 2.46764 2.65932 3.11335 3.29934 3.58276 3.83962 3.87597 4.03014 4.14725 4.22255 4.35960 4.59535 4.62258 4.72324 4.80295 4.87612 4.91259 4.96236 5.01272 5.03884 5.15773 5.33344 5.36022 5.39535 5.41194 5.51766 5.62671 5.82863 6.04475 6.54484 6.66916 6.76939 6.78397 7.21704 7.38201 8.86755 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.004027 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.277372 B = 6951.592537 C = 7692.874871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.149 4.149 4 C 0.157 3.843 5 C -0.133 4.133 6 C -0.072 4.072 7 C 0.542 3.458 8 O -0.581 6.581 9 N -0.691 5.691 10 C 0.269 3.731 11 H 0.005 0.995 12 C -0.135 4.135 13 C -0.551 4.551 14 H 0.075 0.925 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.973 3.027 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.270 1.270 21 C -0.158 4.158 22 C 0.314 3.686 23 O -0.482 6.482 24 N -0.501 5.501 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.150 0.850 33 H 0.405 0.595 34 H 0.041 0.959 35 H 0.013 0.987 36 H 0.070 0.930 37 H 0.267 0.733 38 H 0.162 0.838 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 -6.193 18.212 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.207 4.207 4 C 0.019 3.981 5 C -0.153 4.153 6 C -0.083 4.083 7 C 0.328 3.672 8 O -0.463 6.463 9 N -0.340 5.340 10 C 0.166 3.834 11 H 0.023 0.977 12 C -0.194 4.194 13 C -0.589 4.589 14 H 0.093 0.907 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.180 4.180 22 C 0.135 3.865 23 O -0.292 6.292 24 N -0.221 5.221 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.242 0.758 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.179 0.821 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -3.292 -5.845 18.533 19.710 hybrid contribution 1.239 -0.129 -1.664 2.079 sum -2.053 -5.974 16.869 18.013 Atomic orbital electron populations 1.21823 0.92588 1.02136 1.03267 1.20189 0.96926 0.95822 0.93191 1.21966 1.01310 0.93947 1.03454 1.21342 0.93548 0.87923 0.95288 1.22214 0.98880 1.02634 0.91592 1.20321 0.99774 0.94301 0.93862 1.18613 0.77763 0.86445 0.84375 1.90709 1.52483 1.17246 1.85832 1.46246 1.63279 1.14364 1.10074 1.18471 0.93871 0.92007 0.79013 0.97687 1.21918 0.96343 0.99701 1.01451 1.21484 1.22277 1.13704 1.01422 0.90678 1.25782 0.98351 0.95476 0.98721 1.70035 1.42815 1.23433 1.19093 0.85383 0.78869 0.78689 0.77320 1.18850 1.21188 1.19511 1.22434 1.01916 0.93439 1.00197 1.18980 0.94863 0.84846 0.87826 1.84756 1.36760 1.16704 1.91016 1.66911 1.12669 1.09262 1.33222 0.89336 0.93072 0.92896 0.88147 0.89376 0.92597 0.92481 0.83215 0.75846 0.94011 0.96786 0.91112 0.92425 0.82088 0.71542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.18 71.98 0.66 -1.63 16 2 C -0.04 -0.77 3.23 -11.54 -0.04 -0.80 16 3 C -0.15 -2.39 8.61 71.98 0.62 -1.77 16 4 C 0.16 3.89 5.79 42.50 0.25 4.14 16 5 C -0.13 -3.81 8.74 22.63 0.20 -3.61 16 6 C -0.07 -2.30 5.91 -19.90 -0.12 -2.42 16 7 C 0.54 22.24 7.76 86.88 0.67 22.91 16 8 O -0.58 -28.42 16.11 -3.75 -0.06 -28.48 16 9 N -0.69 -28.75 5.03 -448.67 -2.26 -31.01 16 10 C 0.27 13.83 2.56 44.25 0.11 13.94 16 11 H 0.01 0.31 7.58 -2.38 -0.02 0.30 16 12 C -0.14 -6.81 9.26 71.98 0.67 -6.15 16 13 C -0.55 -28.61 8.73 25.60 0.22 -28.38 16 14 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 15 C 0.02 0.91 5.30 84.65 0.45 1.36 16 16 N -0.92 -51.68 11.32 21.45 0.24 -51.44 16 17 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 C -0.16 -4.19 9.55 22.75 0.22 -3.97 16 22 C 0.31 7.82 7.74 84.78 0.66 8.48 16 23 O -0.48 -9.62 13.56 -90.08 -1.22 -10.84 16 24 N -0.50 -13.05 10.27 -297.15 -3.05 -16.10 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.02 6.48 -2.39 -0.02 1.00 16 32 H 0.15 4.32 5.98 -2.91 -0.02 4.30 16 33 H 0.41 14.09 6.68 -92.71 -0.62 13.47 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 37 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.16 3.66 6.53 -2.91 -0.02 3.64 16 39 H 0.42 3.96 9.06 -74.06 -0.67 3.29 16 Total: -1.00 -68.45 329.05 0.05 -68.41 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.20 Total: 24.23 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.57 Total: 2.10 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -5.06 Total: -98.55 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.28 Total: -39.32 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -68.45 0.05 -68.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180988361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.115 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds