Wall clock time and date at job start Tue Mar 31 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00275 * 2 1 4 4 H 1.09003 * 109.47259 * 29.99723 * 3 2 1 5 5 C 1.53005 * 109.47332 * 270.00028 * 3 2 1 6 6 C 1.53002 * 109.47215 * 149.99931 * 3 2 1 7 7 N 1.46502 * 109.47169 * 299.99993 * 6 3 2 8 8 C 1.34770 * 120.00102 * 179.72540 * 7 6 3 9 9 O 1.21588 * 120.00213 * 0.27389 * 8 7 6 10 10 N 1.34776 * 120.00049 * 180.27576 * 8 7 6 11 11 C 1.39243 * 119.99863 * 175.70980 * 10 8 7 12 12 C 1.39484 * 119.83394 * 215.01826 * 11 10 8 13 13 C 1.36372 * 120.17030 * 179.76222 * 12 11 10 14 14 C 1.40868 * 119.82819 * 0.53512 * 13 12 11 15 15 C 1.41154 * 120.16470 * 179.69627 * 14 13 12 16 16 H 1.08003 * 119.99734 * 214.80530 * 15 14 13 17 17 C 1.39892 * 120.00041 * 34.81031 * 15 14 13 18 18 N 1.30881 * 119.99874 * 355.55506 * 17 15 14 19 19 Si 1.86800 * 120.00284 * 175.55942 * 17 15 14 20 20 H 1.48496 * 109.47198 * 59.99270 * 19 17 15 21 21 H 1.48497 * 109.47346 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46867 * 299.99983 * 19 17 15 23 23 C 1.40871 * 119.66882 * 359.72154 * 14 13 12 24 24 C 1.36370 * 119.83380 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47279 * 300.00206 * 1 2 3 26 26 H 1.08999 * 109.47195 * 59.99988 * 1 2 3 27 27 H 1.09000 * 109.47655 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47484 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.46700 * 300.00037 * 5 3 2 30 30 H 1.08994 * 109.47009 * 59.99582 * 5 3 2 31 31 H 1.09002 * 109.47148 * 180.02562 * 6 3 2 32 32 H 1.08995 * 109.47321 * 60.00020 * 6 3 2 33 33 H 0.97000 * 119.99619 * 359.97438 * 7 6 3 34 34 H 0.97002 * 119.99743 * 355.70926 * 10 8 7 35 35 H 1.08007 * 119.91041 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.08945 * 180.25397 * 13 12 11 37 37 H 0.97004 * 119.99805 * 180.02562 * 18 17 15 38 38 H 1.08006 * 120.08412 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.92005 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2631 0.7213 7 7 3.1603 0.8170 2.1025 8 6 4.2167 0.6980 2.9307 9 8 5.3342 0.9656 2.5331 10 7 4.0347 0.2823 4.1998 11 6 5.1340 0.0735 5.0285 12 6 5.1096 -0.9581 5.9669 13 6 6.1844 -1.1718 6.7787 14 6 7.3168 -0.3403 6.6754 15 6 8.4306 -0.5510 7.5165 16 1 9.0081 0.2909 7.8689 17 6 8.7865 -1.8503 7.8935 18 7 8.0372 -2.8630 7.5386 19 14 10.3310 -2.1399 8.9035 20 1 10.2243 -1.4089 10.1917 21 1 10.4829 -3.5927 9.1703 22 1 11.5134 -1.6478 8.1517 23 6 7.3318 0.7030 5.7289 24 6 6.2520 0.9005 4.9197 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.6615 2.7668 -1.4426 29 1 2.8830 1.0773 -1.9563 30 1 1.2569 1.8014 -1.9563 31 1 3.8021 2.2590 0.7217 32 1 4.0241 0.5692 0.2075 33 1 2.2688 0.6039 2.4198 34 1 3.1378 0.1285 4.5358 35 1 4.2389 -1.5921 6.0479 36 1 6.1657 -1.9735 7.5020 37 1 8.2838 -3.7640 7.8004 38 1 8.1963 1.3448 5.6442 39 1 6.2618 1.7001 4.1939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189707108.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:35 Heat of formation + Delta-G solvation = -77.455553 kcal Electronic energy + Delta-G solvation = -20819.865034 eV Core-core repulsion = 17533.462056 eV Total energy + Delta-G solvation = -3286.402977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42195 -39.61426 -38.96726 -36.26136 -35.65130 -34.66658 -32.65730 -31.44517 -30.61157 -27.87444 -27.25749 -26.12048 -23.41506 -22.68043 -22.42799 -21.58135 -19.44242 -19.08573 -18.33080 -17.84300 -17.09138 -16.55509 -16.41404 -16.15339 -15.77169 -15.60245 -15.02440 -14.88881 -14.49957 -14.11225 -13.93410 -13.65721 -13.54137 -13.33122 -13.22019 -13.00607 -12.82290 -12.74904 -12.46378 -12.29617 -11.82714 -11.70244 -11.38211 -11.23308 -11.02868 -10.65952 -10.60006 -10.08811 -9.43854 -8.66515 -8.47332 -6.29832 0.87369 1.17080 1.40638 1.50442 1.53291 1.75726 2.21830 2.26988 2.78670 2.84084 3.38137 3.71151 3.78022 4.05131 4.20994 4.41505 4.51891 4.55574 4.57996 4.60338 4.73252 4.81417 4.93374 4.94977 4.97596 5.15811 5.17159 5.27013 5.35184 5.46186 5.49431 5.71722 5.84150 6.05768 6.13839 6.26533 6.27515 6.42509 6.70924 6.99579 7.03857 7.16115 7.66114 8.45311 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043887 B = 0.002980 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.856006 B = 9394.940959 C = 9673.675953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.082 3.918 4 H 0.089 0.911 5 C -0.170 4.170 6 C 0.139 3.861 7 N -0.724 5.724 8 C 0.692 3.308 9 O -0.625 6.625 10 N -0.659 5.659 11 C 0.040 3.960 12 C -0.121 4.121 13 C -0.158 4.158 14 C 0.065 3.935 15 C -0.499 4.499 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.843 5.843 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.219 4.219 24 C -0.098 4.098 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.410 0.590 34 H 0.414 0.586 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.284 0.716 38 H 0.096 0.904 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 5.513 -11.705 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.024 3.976 4 H 0.107 0.893 5 C -0.228 4.228 6 C 0.015 3.985 7 N -0.381 5.381 8 C 0.392 3.608 9 O -0.506 6.506 10 N -0.307 5.307 11 C -0.054 4.054 12 C -0.141 4.141 13 C -0.178 4.178 14 C 0.063 3.937 15 C -0.530 4.530 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.471 5.471 19 Si 0.810 3.190 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.191 1.191 23 C -0.239 4.239 24 C -0.118 4.118 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.247 0.753 34 H 0.251 0.749 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.658 5.339 -12.104 20.498 hybrid contribution -0.055 -0.279 0.571 0.637 sum -15.713 5.060 -11.533 20.137 Atomic orbital electron populations 1.22988 0.79456 1.03657 1.01156 1.87975 1.21440 1.27988 1.95248 1.22381 0.93098 0.85359 0.96802 0.89309 1.22191 1.03370 1.02354 0.94838 1.21433 0.97250 1.00169 0.79632 1.44768 1.08655 1.72837 1.11854 1.16201 0.84758 0.78731 0.81066 1.90882 1.24708 1.58166 1.76854 1.41873 1.08801 1.70287 1.09725 1.17117 0.90334 0.99530 0.98392 1.20531 0.99292 0.96254 0.98047 1.21162 0.92296 1.02343 1.01980 1.18023 0.92830 0.91555 0.91288 1.19686 1.11729 0.93781 1.27817 0.90933 1.26738 1.01297 0.95076 0.95369 1.69830 1.37724 1.00675 1.38897 0.85154 0.77199 0.78030 0.78653 1.18184 1.19273 1.19066 1.20930 0.98927 1.04043 1.00022 1.20526 0.94075 0.98761 0.98463 0.92642 0.92860 0.89173 0.90012 0.92455 0.90563 0.90134 0.93143 0.75345 0.74915 0.85801 0.86262 0.90537 0.88617 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.41 -7.22 10.09 -148.98 -1.50 -8.72 16 3 C 0.08 1.22 2.81 30.60 0.09 1.31 16 4 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 5 C -0.17 -2.06 9.53 71.98 0.69 -1.37 16 6 C 0.14 3.13 5.37 86.38 0.46 3.59 16 7 N -0.72 -18.14 5.45 -478.54 -2.61 -20.75 16 8 C 0.69 24.97 8.40 179.06 1.50 26.47 16 9 O -0.63 -28.80 13.76 -3.99 -0.05 -28.86 16 10 N -0.66 -23.09 5.31 -316.78 -1.68 -24.77 16 11 C 0.04 1.84 6.31 38.57 0.24 2.08 16 12 C -0.12 -5.58 9.90 22.13 0.22 -5.36 16 13 C -0.16 -8.45 8.62 22.48 0.19 -8.25 16 14 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 15 C -0.50 -28.10 9.02 23.39 0.21 -27.89 16 16 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 17 C 0.03 1.40 5.42 85.24 0.46 1.87 16 18 N -0.84 -45.56 10.60 21.82 0.23 -45.33 16 19 Si 0.99 40.03 29.56 68.60 2.03 42.06 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 23 C -0.22 -11.81 9.74 22.48 0.22 -11.60 16 24 C -0.10 -4.93 8.61 22.13 0.19 -4.74 16 25 H 0.05 0.43 8.08 -2.39 -0.02 0.41 16 26 H 0.05 0.42 7.87 -2.39 -0.02 0.41 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.71 7.87 -2.39 -0.02 0.69 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.41 7.55 8.37 -92.71 -0.78 6.78 16 34 H 0.41 10.71 8.83 -92.71 -0.82 9.89 16 35 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 36 H 0.12 6.62 6.13 -2.91 -0.02 6.60 16 37 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 38 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 39 H 0.11 5.40 6.22 -2.91 -0.02 5.38 16 Total: -1.00 -71.94 330.30 1.47 -70.46 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.52 Total: 34.75 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 5.59 Total: -18.84 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -4.06 Total: -90.85 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.56 Total: -37.58 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -71.94 1.47 -70.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189707108.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.994 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds