Wall clock time and date at job start Tue Mar 31 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99980 * 2 1 4 4 C 1.50697 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.38274 * 119.93237 * 90.00044 * 4 3 2 6 6 C 1.38117 * 120.07450 * 180.02562 * 5 4 3 7 7 C 1.38861 * 119.92635 * 0.02562 * 6 5 4 8 8 N 1.39944 * 120.06662 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00261 * 34.74156 * 8 7 6 10 10 O 1.21586 * 120.00119 * 5.39737 * 9 8 7 11 11 N 1.34777 * 119.99921 * 185.40461 * 9 8 7 12 12 C 1.46497 * 119.99958 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47400 * 325.00159 * 12 11 9 14 14 C 1.53009 * 109.47190 * 84.99534 * 12 11 9 15 15 C 1.50702 * 109.47500 * 204.99692 * 12 11 9 16 16 H 1.07998 * 119.99606 * 334.89902 * 15 12 11 17 17 C 1.37878 * 119.99991 * 154.90034 * 15 12 11 18 18 N 1.31516 * 119.99305 * 174.95579 * 17 15 12 19 19 Si 1.86790 * 120.00072 * 354.95361 * 17 15 12 20 20 H 1.48506 * 109.47091 * 275.02571 * 19 17 15 21 21 H 1.48500 * 109.47440 * 35.02784 * 19 17 15 22 22 H 1.48499 * 109.47206 * 155.02830 * 19 17 15 23 23 C 1.38863 * 119.86110 * 0.25231 * 7 6 5 24 24 C 1.38109 * 119.93049 * 359.49375 * 23 7 6 25 25 H 1.08996 * 109.46839 * 299.99592 * 1 2 3 26 26 H 1.09001 * 109.47125 * 59.99898 * 1 2 3 27 27 H 1.08998 * 109.46577 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46908 * 60.00033 * 3 2 1 29 29 H 1.08996 * 109.47149 * 300.00379 * 3 2 1 30 30 H 1.08008 * 119.96281 * 359.97438 * 5 4 3 31 31 H 1.08004 * 120.03532 * 179.97438 * 6 5 4 32 32 H 0.97009 * 119.99888 * 214.73597 * 8 7 6 33 33 H 0.96999 * 120.00038 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.46833 * 54.99560 * 14 12 11 35 35 H 1.08996 * 109.47312 * 174.99441 * 14 12 11 36 36 H 1.08999 * 109.47215 * 294.99386 * 14 12 11 37 37 H 0.97004 * 119.99212 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.03769 * 179.72512 * 23 7 6 39 39 H 1.08000 * 119.96922 * 180.25248 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1998 1.1323 -1.1992 6 6 5.5766 1.0228 -1.2032 7 6 6.2706 0.9666 -0.0018 8 7 7.6656 0.8550 -0.0024 9 6 8.3900 1.4650 -0.9614 10 8 7.8420 2.1916 -1.7677 11 7 9.7219 1.2694 -1.0268 12 6 10.5092 1.9319 -2.0696 13 1 9.9199 1.9961 -2.9842 14 6 10.8866 3.3404 -1.6062 15 6 11.7623 1.1375 -2.3340 16 1 12.1687 0.4981 -1.5644 17 6 12.3897 1.2271 -3.5585 18 7 13.5356 0.6128 -3.7566 19 14 11.6122 2.2208 -4.9359 20 1 10.6285 1.3768 -5.6608 21 1 10.9222 3.4047 -4.3636 22 1 12.6679 2.6708 -5.8784 23 6 5.5770 1.0154 1.2002 24 6 4.2007 1.1302 1.1975 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 3.6593 1.1748 -2.1334 31 1 6.1128 0.9800 -2.1398 32 1 8.1112 0.3388 0.6875 33 1 10.1591 0.6899 -0.3835 34 1 11.3989 3.2819 -0.6459 35 1 11.5458 3.8006 -2.3422 36 1 9.9840 3.9422 -1.5005 37 1 13.9772 0.6761 -4.6179 38 1 6.1136 0.9674 2.1364 39 1 3.6610 1.1724 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192507062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:05 Heat of formation + Delta-G solvation = -49.086922 kcal Electronic energy + Delta-G solvation = -20830.390471 eV Core-core repulsion = 17545.217650 eV Total energy + Delta-G solvation = -3285.172821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31956 -38.90836 -37.64165 -35.30003 -34.33062 -32.44055 -31.02293 -30.86863 -29.37551 -27.04782 -25.33848 -25.11927 -22.95668 -22.06457 -20.74262 -19.89774 -18.43177 -17.52966 -16.60165 -16.45416 -16.23395 -16.04557 -15.24291 -14.93766 -14.50905 -14.23223 -14.05076 -13.47653 -13.37239 -13.23521 -12.79816 -12.58061 -12.44720 -12.32234 -11.82691 -11.63457 -11.31490 -11.18031 -11.14183 -10.84845 -10.47052 -10.08178 -9.93953 -9.91001 -9.56928 -9.23419 -8.83919 -8.72056 -8.27286 -7.82723 -6.24089 -4.27238 1.28115 1.49557 3.06766 3.27621 3.34295 3.40274 3.41456 3.74824 4.12275 4.32059 4.70684 4.77175 4.78713 5.02728 5.03062 5.08702 5.14870 5.16683 5.20496 5.37851 5.45567 5.68232 5.76137 6.05967 6.29455 6.30721 6.43265 6.52904 6.61836 6.66690 6.69856 6.86729 6.89926 7.08908 7.17742 7.33042 7.44533 7.53457 8.23532 8.61190 8.76373 9.07740 9.37638 10.87718 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035246 B = 0.003228 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.233511 B = 8671.468277 C = 9026.614291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.124 4.124 5 C -0.077 4.077 6 C -0.124 4.124 7 C 0.190 3.810 8 N -0.696 5.696 9 C 0.693 3.307 10 O -0.585 6.585 11 N -0.713 5.713 12 C 0.251 3.749 13 H 0.048 0.952 14 C -0.152 4.152 15 C -0.532 4.532 16 H 0.079 0.921 17 C 0.081 3.919 18 N -0.890 5.890 19 Si 0.872 3.128 20 H -0.273 1.273 21 H -0.257 1.257 22 H -0.286 1.286 23 C -0.159 4.159 24 C -0.078 4.078 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.404 0.596 33 H 0.392 0.608 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.268 0.732 38 H 0.125 0.875 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.023 0.116 10.134 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.032 3.968 4 C -0.125 4.125 5 C -0.096 4.096 6 C -0.144 4.144 7 C 0.094 3.906 8 N -0.343 5.343 9 C 0.393 3.607 10 O -0.463 6.463 11 N -0.364 5.364 12 C 0.148 3.852 13 H 0.066 0.934 14 C -0.211 4.211 15 C -0.570 4.570 16 H 0.097 0.903 17 C -0.123 4.123 18 N -0.526 5.526 19 Si 0.699 3.301 20 H -0.199 1.199 21 H -0.181 1.181 22 H -0.212 1.212 23 C -0.180 4.180 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.240 0.760 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.101 0.591 9.185 23.021 hybrid contribution 0.040 0.161 -0.106 0.197 sum -21.061 0.753 9.079 22.947 Atomic orbital electron populations 1.22744 0.81316 1.02721 0.99873 1.87998 1.19306 1.27823 1.95366 1.21289 0.90157 0.84773 1.00598 1.19424 0.93627 1.05810 0.93647 1.20886 0.93604 0.97723 0.97347 1.21232 0.93696 1.01254 0.98234 1.17590 0.82074 0.97110 0.93820 1.42870 1.04538 1.55224 1.31718 1.16187 0.82573 0.80519 0.81373 1.90887 1.70821 1.41886 1.42667 1.45764 1.04480 1.50799 1.35391 1.18992 0.90387 0.89663 0.86142 0.93418 1.22327 0.99290 0.98472 1.00993 1.20986 1.07378 1.27878 1.00807 0.90331 1.24866 0.94501 0.94820 0.98154 1.69883 1.15519 1.42729 1.24474 0.86951 0.79315 0.81687 0.82170 1.19860 1.18140 1.21175 1.20814 0.94483 1.06190 0.96492 1.20701 0.93309 0.98433 0.97272 0.94167 0.94109 0.89672 0.92675 0.92597 0.85931 0.84374 0.76043 0.77487 0.93598 0.92543 0.95150 0.92225 0.85715 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.24 10.69 -35.23 -0.38 -4.61 16 3 C 0.11 1.07 6.06 36.00 0.22 1.28 16 4 C -0.12 -1.51 5.51 -104.59 -0.58 -2.08 16 5 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 6 C -0.12 -1.96 8.65 -39.40 -0.34 -2.30 16 7 C 0.19 2.84 6.25 -83.69 -0.52 2.32 16 8 N -0.70 -10.43 5.34 -14.23 -0.08 -10.51 16 9 C 0.69 13.46 8.25 -86.92 -0.72 12.74 16 10 O -0.58 -13.42 13.80 5.29 0.07 -13.35 16 11 N -0.71 -14.13 5.07 -59.81 -0.30 -14.44 16 12 C 0.25 5.94 2.12 -69.08 -0.15 5.80 16 13 H 0.05 1.23 5.34 -51.93 -0.28 0.96 16 14 C -0.15 -3.35 9.10 37.16 0.34 -3.02 16 15 C -0.53 -14.18 9.06 -34.44 -0.31 -14.49 16 16 H 0.08 2.19 8.02 -52.49 -0.42 1.77 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 19 Si 0.87 21.35 26.19 -169.99 -4.45 16.90 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.26 -6.15 6.14 56.52 0.35 -5.80 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.16 -1.94 9.97 -39.40 -0.39 -2.33 16 24 C -0.08 -0.90 9.69 -39.61 -0.38 -1.28 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 31 H 0.14 2.49 6.53 -52.48 -0.34 2.15 16 32 H 0.40 4.63 8.84 -40.82 -0.36 4.27 16 33 H 0.39 6.71 8.58 -40.82 -0.35 6.36 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.26 6.73 -51.93 -0.35 0.91 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -32.61 329.64 -7.11 -39.72 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.51 Total: 7.93 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.21 Total: -1.31 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.39 Total: -50.25 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.30 Total: -17.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.45 Total: 16.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.61 -7.11 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192507062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.364 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds