Wall clock time and date at job start Tue Mar 31 2020 00:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99980 * 2 1 4 4 C 1.50697 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.38274 * 119.93237 * 90.00044 * 4 3 2 6 6 C 1.38117 * 120.07450 * 180.02562 * 5 4 3 7 7 C 1.38861 * 119.92635 * 0.02562 * 6 5 4 8 8 N 1.39944 * 120.06662 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00261 * 34.74156 * 8 7 6 10 10 O 1.21586 * 120.00119 * 5.39737 * 9 8 7 11 11 N 1.34777 * 119.99921 * 185.40461 * 9 8 7 12 12 C 1.46497 * 119.99958 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47400 * 325.00159 * 12 11 9 14 14 C 1.53009 * 109.47190 * 84.99534 * 12 11 9 15 15 C 1.50702 * 109.47500 * 204.99692 * 12 11 9 16 16 H 1.07998 * 119.99606 * 334.89902 * 15 12 11 17 17 C 1.37878 * 119.99991 * 154.90034 * 15 12 11 18 18 N 1.31516 * 119.99305 * 174.95579 * 17 15 12 19 19 Si 1.86790 * 120.00072 * 354.95361 * 17 15 12 20 20 H 1.48506 * 109.47091 * 275.02571 * 19 17 15 21 21 H 1.48500 * 109.47440 * 35.02784 * 19 17 15 22 22 H 1.48499 * 109.47206 * 155.02830 * 19 17 15 23 23 C 1.38863 * 119.86110 * 0.25231 * 7 6 5 24 24 C 1.38109 * 119.93049 * 359.49375 * 23 7 6 25 25 H 1.08996 * 109.46839 * 299.99592 * 1 2 3 26 26 H 1.09001 * 109.47125 * 59.99898 * 1 2 3 27 27 H 1.08998 * 109.46577 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46908 * 60.00033 * 3 2 1 29 29 H 1.08996 * 109.47149 * 300.00379 * 3 2 1 30 30 H 1.08008 * 119.96281 * 359.97438 * 5 4 3 31 31 H 1.08004 * 120.03532 * 179.97438 * 6 5 4 32 32 H 0.97009 * 119.99888 * 214.73597 * 8 7 6 33 33 H 0.96999 * 120.00038 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.46833 * 54.99560 * 14 12 11 35 35 H 1.08996 * 109.47312 * 174.99441 * 14 12 11 36 36 H 1.08999 * 109.47215 * 294.99386 * 14 12 11 37 37 H 0.97004 * 119.99212 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.03769 * 179.72512 * 23 7 6 39 39 H 1.08000 * 119.96922 * 180.25248 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1998 1.1323 -1.1992 6 6 5.5766 1.0228 -1.2032 7 6 6.2706 0.9666 -0.0018 8 7 7.6656 0.8550 -0.0024 9 6 8.3900 1.4650 -0.9614 10 8 7.8420 2.1916 -1.7677 11 7 9.7219 1.2694 -1.0268 12 6 10.5092 1.9319 -2.0696 13 1 9.9199 1.9961 -2.9842 14 6 10.8866 3.3404 -1.6062 15 6 11.7623 1.1375 -2.3340 16 1 12.1687 0.4981 -1.5644 17 6 12.3897 1.2271 -3.5585 18 7 13.5356 0.6128 -3.7566 19 14 11.6122 2.2208 -4.9359 20 1 10.6285 1.3768 -5.6608 21 1 10.9222 3.4047 -4.3636 22 1 12.6679 2.6708 -5.8784 23 6 5.5770 1.0154 1.2002 24 6 4.2007 1.1302 1.1975 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8899 30 1 3.6593 1.1748 -2.1334 31 1 6.1128 0.9800 -2.1398 32 1 8.1112 0.3388 0.6875 33 1 10.1591 0.6899 -0.3835 34 1 11.3989 3.2819 -0.6459 35 1 11.5458 3.8006 -2.3422 36 1 9.9840 3.9422 -1.5005 37 1 13.9772 0.6761 -4.6179 38 1 6.1136 0.9674 2.1364 39 1 3.6610 1.1724 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192507062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:04 Heat of formation + Delta-G solvation = -72.432961 kcal Electronic energy + Delta-G solvation = -20831.402831 eV Core-core repulsion = 17545.217650 eV Total energy + Delta-G solvation = -3286.185181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64091 -40.03893 -38.51001 -36.93446 -35.74519 -34.41641 -32.31415 -31.88953 -30.85814 -27.78315 -27.28851 -26.03338 -24.06841 -23.40272 -22.04201 -21.53662 -20.03260 -18.80908 -18.27947 -17.34993 -17.22448 -16.91609 -16.80460 -16.23887 -15.98418 -15.44468 -15.20826 -15.00441 -14.59037 -14.48700 -14.29690 -14.17396 -13.81570 -13.35662 -13.12867 -13.07572 -12.82987 -12.53391 -12.34150 -12.18118 -12.11698 -11.84717 -11.36302 -11.24748 -11.11149 -10.83710 -10.60099 -9.94102 -9.85246 -8.99868 -8.38829 -6.44468 0.24560 0.48314 1.30250 1.35287 1.45858 1.71689 2.10006 2.27950 2.69635 2.97761 3.25967 3.37622 3.89640 3.97653 4.10755 4.28029 4.41217 4.43924 4.50207 4.58959 4.60495 4.67074 4.73041 4.76315 4.82011 4.90561 5.03923 5.10704 5.28444 5.31335 5.39929 5.45876 5.57518 5.64492 5.68945 5.96955 6.08643 6.26307 6.28927 6.59608 7.12896 7.22691 7.58456 8.76088 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035246 B = 0.003228 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.233511 B = 8671.468277 C = 9026.614291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.107 3.893 4 C -0.123 4.123 5 C -0.087 4.087 6 C -0.150 4.150 7 C 0.163 3.837 8 N -0.678 5.678 9 C 0.694 3.306 10 O -0.622 6.622 11 N -0.712 5.712 12 C 0.256 3.744 13 H 0.026 0.974 14 C -0.144 4.144 15 C -0.527 4.527 16 H 0.059 0.941 17 C 0.033 3.967 18 N -0.930 5.930 19 Si 0.923 3.077 20 H -0.277 1.277 21 H -0.249 1.249 22 H -0.277 1.277 23 C -0.147 4.147 24 C -0.076 4.076 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.422 0.578 33 H 0.405 0.595 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.271 0.729 38 H 0.155 0.845 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 0.674 12.035 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.124 4.124 5 C -0.106 4.106 6 C -0.171 4.171 7 C 0.067 3.933 8 N -0.327 5.327 9 C 0.395 3.605 10 O -0.503 6.503 11 N -0.364 5.364 12 C 0.152 3.848 13 H 0.044 0.956 14 C -0.203 4.203 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.167 4.167 18 N -0.569 5.569 19 Si 0.748 3.252 20 H -0.203 1.203 21 H -0.173 1.173 22 H -0.203 1.203 23 C -0.168 4.168 24 C -0.094 4.094 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.123 0.877 32 H 0.261 0.739 33 H 0.241 0.759 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.172 0.828 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.428 1.121 11.142 25.967 hybrid contribution 0.605 -0.079 -0.596 0.853 sum -22.823 1.042 10.546 25.163 Atomic orbital electron populations 1.22934 0.79455 1.03717 1.01053 1.87943 1.21390 1.28343 1.95626 1.21350 0.88472 0.84842 1.02173 1.19790 0.95242 1.04112 0.93276 1.21024 0.92815 0.97980 0.98736 1.21125 0.94831 1.03548 0.97548 1.17823 0.81677 0.99119 0.94651 1.42529 1.04680 1.54550 1.30912 1.16218 0.82230 0.80385 0.81686 1.90863 1.71430 1.43632 1.44350 1.45390 1.04795 1.51186 1.35058 1.18705 0.89087 0.90402 0.86622 0.95569 1.22207 0.99449 0.97183 1.01490 1.21171 1.08078 1.27211 1.00116 0.92333 1.25533 0.94851 0.95970 1.00365 1.69977 1.16933 1.44716 1.25260 0.86130 0.78582 0.80657 0.79825 1.20263 1.17313 1.20256 1.21124 0.94948 1.04333 0.96392 1.21141 0.93134 0.96791 0.98356 0.92593 0.93289 0.88888 0.90357 0.91815 0.85184 0.87678 0.73937 0.75925 0.92141 0.93115 0.94708 0.92018 0.82751 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.06 10.69 -148.98 -1.59 -9.65 16 3 C 0.11 1.82 6.06 71.23 0.43 2.25 16 4 C -0.12 -2.72 5.51 -19.85 -0.11 -2.83 16 5 C -0.09 -2.32 9.69 22.25 0.22 -2.11 16 6 C -0.15 -4.85 8.65 22.39 0.19 -4.65 16 7 C 0.16 4.70 6.25 38.14 0.24 4.94 16 8 N -0.68 -19.71 5.34 -317.19 -1.70 -21.40 16 9 C 0.69 26.90 8.25 179.05 1.48 28.38 16 10 O -0.62 -29.03 13.80 -3.99 -0.05 -29.09 16 11 N -0.71 -28.01 5.07 -461.40 -2.34 -30.35 16 12 C 0.26 12.11 2.12 44.25 0.09 12.21 16 13 H 0.03 1.37 5.34 -2.39 -0.01 1.36 16 14 C -0.14 -6.25 9.10 71.99 0.66 -5.59 16 15 C -0.53 -28.35 9.06 25.60 0.23 -28.12 16 16 H 0.06 3.32 8.02 -2.91 -0.02 3.30 16 17 C 0.03 1.86 5.47 84.65 0.46 2.32 16 18 N -0.93 -55.33 13.96 21.45 0.30 -55.04 16 19 Si 0.92 44.37 26.19 68.60 1.80 46.17 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.25 -11.57 6.14 99.48 0.61 -10.96 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C -0.15 -3.17 9.97 22.39 0.22 -2.95 16 24 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 29 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 30 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 31 H 0.11 4.05 6.53 -2.91 -0.02 4.03 16 32 H 0.42 8.93 8.84 -92.70 -0.82 8.11 16 33 H 0.41 13.61 8.58 -92.71 -0.80 12.82 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 2.22 6.73 -2.39 -0.02 2.20 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -71.26 329.64 1.35 -69.91 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.64 Total: 25.33 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.58 Total: 4.12 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -3.74 Total: -106.79 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.65 Total: -38.74 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.80 Total: 46.17 kcal Total: -71.26 1.35 -69.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192507062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.525 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds