Wall clock time and date at job start Tue Mar 31 2020 00:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47248 * 2 1 4 4 C 1.50703 * 109.46712 * 119.99544 * 2 1 3 5 5 H 1.08003 * 119.99766 * 119.99852 * 4 2 1 6 6 C 1.37872 * 120.00267 * 299.99994 * 4 2 1 7 7 N 1.31513 * 120.00336 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99895 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47134 * 90.00193 * 8 6 4 10 10 H 1.48501 * 109.46960 * 209.99898 * 8 6 4 11 11 H 1.48498 * 109.47200 * 329.99779 * 8 6 4 12 12 N 1.46494 * 109.47219 * 239.99765 * 2 1 3 13 13 C 1.46502 * 120.00102 * 300.00168 * 12 2 1 14 14 C 1.34782 * 120.00087 * 120.00423 * 12 2 1 15 15 O 1.21607 * 119.99768 * 356.11477 * 14 12 2 16 16 C 1.47418 * 119.99880 * 176.12123 * 14 12 2 17 17 C 1.36087 * 126.44517 * 185.85745 * 16 14 12 18 18 O 1.34257 * 106.95083 * 179.89833 * 17 16 14 19 19 C 1.34053 * 108.22218 * 0.36091 * 18 17 16 20 20 C 1.50707 * 125.37512 * 179.73429 * 19 18 17 21 21 C 1.53780 * 113.61574 * 37.53807 * 20 19 18 22 22 C 1.53778 * 87.07986 * 220.01750 * 21 20 19 23 23 C 1.53778 * 113.61195 * 300.04167 * 20 19 18 24 24 N 1.29927 * 109.24762 * 359.77221 * 19 18 17 25 25 H 1.09003 * 109.46528 * 59.99922 * 1 2 3 26 26 H 1.09000 * 109.47215 * 300.00454 * 1 2 3 27 27 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00236 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47056 * 95.67821 * 13 12 2 30 30 H 1.08998 * 109.47263 * 215.68011 * 13 12 2 31 31 H 1.09005 * 109.46820 * 335.68304 * 13 12 2 32 32 H 1.08004 * 126.52971 * 0.03368 * 17 16 14 33 33 H 1.08994 * 112.84812 * 168.85070 * 20 19 18 34 34 H 1.08996 * 113.61536 * 334.57439 * 21 20 19 35 35 H 1.09003 * 113.60620 * 105.47290 * 21 20 19 36 36 H 1.09003 * 113.61760 * 270.88393 * 22 21 20 37 37 H 1.09000 * 113.68809 * 139.99448 * 22 21 20 38 38 H 1.08999 * 113.61627 * 254.52693 * 23 20 19 39 39 H 1.09002 * 113.61891 * 25.43921 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.6303 -0.5439 4.4120 10 1 1.3443 -0.9488 5.1124 11 1 2.4878 -2.5652 3.7124 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.0290 1.1472 -1.9279 16 6 3.3550 -0.7532 -3.2420 17 6 4.2371 -0.2556 -4.1510 18 8 4.4862 -1.2371 -5.0326 19 6 3.7671 -2.3114 -4.6782 20 6 3.7517 -3.6303 -5.4072 21 6 5.1243 -4.0416 -5.9655 22 6 4.3793 -4.5372 -7.2161 23 6 3.2783 -3.5221 -6.8663 24 7 3.0848 -2.0358 -3.6074 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7089 1.1616 3.4844 29 1 0.7950 -2.1450 -2.0833 30 1 2.5038 -2.6071 -1.8964 31 1 1.4311 -2.5711 -0.4764 32 1 4.6586 0.7388 -4.1602 33 1 3.2536 -4.4194 -4.8440 34 1 5.7878 -3.1986 -6.1578 35 1 5.6048 -4.8392 -5.3989 36 1 4.0538 -5.5753 -7.1479 37 1 4.8961 -4.3162 -8.1500 38 1 2.2688 -3.9003 -7.0270 39 1 3.4373 -2.5370 -7.3051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192521590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:37 Heat of formation + Delta-G solvation = -4.800212 kcal Electronic energy + Delta-G solvation = -21687.930833 eV Core-core repulsion = 18404.678428 eV Total energy + Delta-G solvation = -3283.252405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.50349 -40.64954 -39.47900 -37.24597 -36.04803 -34.67115 -31.94921 -31.10246 -27.73019 -27.34964 -27.01196 -26.55035 -25.47758 -23.01120 -22.37503 -20.97838 -19.81931 -18.68231 -18.38497 -17.88795 -17.73941 -17.14218 -16.61094 -16.27742 -16.07013 -15.92649 -14.93379 -14.65717 -14.38909 -13.97055 -13.72824 -13.56464 -13.49025 -13.30394 -13.26065 -12.99565 -12.79622 -12.74074 -12.32653 -12.22883 -12.12430 -11.88719 -11.54360 -11.38687 -11.36159 -11.20713 -10.92154 -10.54982 -10.06127 -9.37223 -8.17412 -6.34464 0.07731 0.97382 1.40832 1.41897 1.52427 1.54167 2.14832 2.29550 2.43164 2.83946 3.10350 3.58217 3.61970 3.68707 3.86432 3.95595 4.06654 4.45967 4.53697 4.59548 4.71803 4.74028 4.76291 4.82756 4.83492 4.87756 4.93153 5.01304 5.08654 5.15131 5.16612 5.31198 5.41574 5.53733 5.55994 5.62617 5.96374 6.11196 6.45647 6.69977 6.72555 7.17110 7.38540 8.87584 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.004007 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.882644 B = 6986.687859 C = 7313.986525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.260 3.740 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.263 1.263 12 N -0.581 5.581 13 C 0.089 3.911 14 C 0.574 3.426 15 O -0.593 6.593 16 C -0.090 4.090 17 C 0.023 3.977 18 O -0.188 6.188 19 C 0.210 3.790 20 C -0.028 4.028 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.129 4.129 24 N -0.475 5.475 25 H 0.018 0.982 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.267 0.733 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.253 0.747 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -12.675 -19.729 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.033 0.967 4 C -0.581 4.581 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.793 3.207 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.188 1.188 12 N -0.309 5.309 13 C -0.054 4.054 14 C 0.362 3.638 15 O -0.476 6.476 16 C -0.209 4.209 17 C -0.051 4.051 18 O -0.074 6.074 19 C 0.001 3.999 20 C -0.047 4.047 21 C -0.169 4.169 22 C -0.163 4.163 23 C -0.167 4.167 24 N -0.204 5.204 25 H 0.037 0.963 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.269 0.731 33 H 0.160 0.840 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.148 -12.400 -19.170 23.644 hybrid contribution 0.405 0.818 1.022 1.370 sum 6.552 -11.582 -18.148 22.504 Atomic orbital electron populations 1.21866 0.96931 1.00055 1.00054 1.18678 0.91883 0.92366 0.81186 0.96699 1.21523 1.32269 1.13182 0.91081 0.92382 1.25747 0.94913 0.95642 1.01980 1.70014 1.37039 1.23771 1.24635 0.85403 0.77931 0.79077 0.78298 1.20547 1.20196 1.18769 1.48112 1.47340 1.13640 1.21837 1.22031 1.01912 0.80420 1.01009 1.17390 0.79010 0.85588 0.81782 1.90714 1.63272 1.16487 1.77148 1.21667 1.05425 0.92892 1.00898 1.25606 0.97605 0.94480 0.87426 1.84346 1.55670 1.20593 1.46829 1.27089 0.89379 0.91352 0.92125 1.21718 1.02069 0.85857 0.95080 1.23040 0.94175 1.01937 0.97728 1.22794 0.95959 0.99628 0.97911 1.23038 1.00968 1.01040 0.91667 1.70928 1.24206 1.12733 1.12541 0.96293 0.90820 0.93721 0.92421 0.92997 0.88102 0.91807 0.73127 0.84034 0.89829 0.89371 0.87987 0.89731 0.89434 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 8.97 71.98 0.65 -6.09 16 2 C 0.26 14.49 2.63 44.25 0.12 14.61 16 3 H 0.02 0.97 6.90 -2.39 -0.02 0.96 16 4 C -0.54 -30.96 7.95 25.60 0.20 -30.75 16 5 H 0.06 3.26 7.43 -2.91 -0.02 3.24 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 12 N -0.58 -28.10 2.75 -830.67 -2.29 -30.39 16 13 C 0.09 3.53 8.58 127.77 1.10 4.63 16 14 C 0.57 27.08 7.67 86.66 0.66 27.75 16 15 O -0.59 -31.69 16.23 -4.05 -0.07 -31.76 16 16 C -0.09 -3.32 6.67 40.41 0.27 -3.05 16 17 C 0.02 0.65 11.95 67.32 0.80 1.46 16 18 O -0.19 -4.61 10.40 0.36 0.00 -4.60 16 19 C 0.21 5.15 7.33 88.39 0.65 5.80 16 20 C -0.03 -0.43 4.29 -11.01 -0.05 -0.48 16 21 C -0.13 -1.48 7.62 31.12 0.24 -1.24 16 22 C -0.13 -0.98 8.08 31.12 0.25 -0.73 16 23 C -0.13 -1.50 7.63 31.12 0.24 -1.26 16 24 N -0.47 -15.18 7.84 -293.04 -2.30 -17.48 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 4.11 6.07 -2.39 -0.01 4.09 16 27 H 0.04 2.12 7.67 -2.39 -0.02 2.10 16 28 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 3.74 5.24 -2.39 -0.01 3.72 16 31 H 0.06 2.61 7.11 -2.38 -0.02 2.60 16 32 H 0.25 5.68 8.06 -2.91 -0.02 5.66 16 33 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.07 7.82 -2.39 -0.02 1.05 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 Total: -1.00 -72.25 323.78 4.25 -67.99 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.05 Total: 11.72 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 5.58 Total: 12.05 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -4.34 Total: -101.46 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.06 Total: -36.36 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.25 4.25 -67.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192521590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.194 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds