Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47047 * 2 1 4 4 C 1.50703 * 109.47257 * 240.00073 * 2 1 3 5 5 H 1.08004 * 119.99606 * 275.00622 * 4 2 1 6 6 C 1.37877 * 120.00163 * 95.00222 * 4 2 1 7 7 N 1.31516 * 119.99712 * 184.98531 * 6 4 2 8 8 Si 1.86798 * 119.99910 * 4.97748 * 6 4 2 9 9 H 1.48509 * 109.46746 * 84.96332 * 8 6 4 10 10 H 1.48496 * 109.47052 * 204.95909 * 8 6 4 11 11 H 1.48498 * 109.47330 * 324.96403 * 8 6 4 12 12 N 1.46503 * 109.47213 * 119.99733 * 2 1 3 13 13 C 1.46493 * 119.99873 * 60.00238 * 12 2 1 14 14 C 1.34774 * 120.00021 * 239.99484 * 12 2 1 15 15 O 1.21498 * 120.00167 * 5.54033 * 14 12 2 16 16 C 1.48332 * 119.99885 * 185.53261 * 14 12 2 17 17 N 1.31490 * 127.15666 * 5.30185 * 16 14 12 18 18 O 1.21428 * 111.52905 * 179.97438 * 17 16 14 19 19 C 1.33190 * 111.56972 * 359.96058 * 18 17 16 20 20 C 1.35379 * 106.63153 * 359.82643 * 19 18 17 21 21 C 1.50066 * 124.92985 * 179.43891 * 20 19 18 22 22 C 1.53544 * 108.29586 * 344.45499 * 21 20 19 23 23 C 1.53109 * 109.50915 * 48.97149 * 22 21 20 24 24 C 1.50597 * 129.60090 * 180.18835 * 19 18 17 25 25 H 1.09003 * 109.46656 * 294.97011 * 1 2 3 26 26 H 1.08994 * 109.46893 * 174.97647 * 1 2 3 27 27 H 1.08998 * 109.47089 * 54.96921 * 1 2 3 28 28 H 0.97000 * 119.99112 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47504 * 95.39976 * 13 12 2 30 30 H 1.08995 * 109.47309 * 215.40034 * 13 12 2 31 31 H 1.09000 * 109.47316 * 335.40225 * 13 12 2 32 32 H 1.08999 * 109.86070 * 224.64378 * 21 20 19 33 33 H 1.09001 * 109.49720 * 104.05186 * 21 20 19 34 34 H 1.09000 * 109.46457 * 288.96193 * 22 21 20 35 35 H 1.09000 * 109.46654 * 168.98448 * 22 21 20 36 36 H 1.08997 * 109.42547 * 170.06334 * 23 22 21 37 37 H 1.09002 * 109.38288 * 50.19305 * 23 22 21 38 38 H 1.08998 * 109.69289 * 282.91408 * 24 19 18 39 39 H 1.08991 * 109.69915 * 43.46992 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7047 -0.6133 -3.4626 8 14 2.3153 1.8791 -2.3169 9 1 3.6029 2.3936 -1.7851 10 1 2.1042 2.3995 -3.6916 11 1 1.2033 2.3283 -1.4413 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7933 -0.0356 2.0833 15 8 3.0042 1.1529 1.9445 16 6 3.3885 -0.7656 3.2291 17 7 3.3344 -2.0587 3.4615 18 8 3.9205 -2.3527 4.4835 19 6 4.4482 -1.2802 5.0712 20 6 4.1350 -0.2181 4.2923 21 6 4.5197 1.2031 4.5822 22 6 4.9593 1.2936 6.0506 23 6 5.9651 0.1794 6.3528 24 6 5.2522 -1.1792 6.3405 25 1 -0.3633 0.4338 0.9317 26 1 -0.3633 -1.0237 -0.0900 27 1 -0.3633 0.5899 -0.8415 28 1 2.9351 -0.1049 -4.2559 29 1 2.4628 -2.7355 1.0564 30 1 1.5299 -2.2620 2.4964 31 1 0.7375 -2.3254 0.9038 32 1 3.6664 1.8597 4.4128 33 1 5.3446 1.4964 3.9328 34 1 4.0892 1.1828 6.6977 35 1 5.4252 2.2623 6.2312 36 1 6.4082 0.3476 7.3343 37 1 6.7489 0.1844 5.5954 38 1 4.5890 -1.2537 7.2023 39 1 5.9891 -1.9816 6.3735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264110740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = 22.855239 kcal Electronic energy + Delta-G solvation = -22257.165619 eV Core-core repulsion = 18975.112444 eV Total energy + Delta-G solvation = -3282.053175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.92194 -39.12460 -37.75140 -35.50902 -33.85427 -32.57741 -31.00054 -30.67084 -29.85314 -26.32034 -25.33699 -24.81496 -23.87980 -22.79293 -20.86858 -19.82580 -18.49642 -17.73192 -17.20792 -16.90457 -16.05374 -15.52863 -15.05469 -14.64498 -14.14836 -14.09441 -13.96422 -13.49963 -13.20451 -13.04688 -12.62385 -12.51924 -12.36991 -12.30228 -11.89142 -11.51827 -11.21194 -11.11836 -11.07159 -10.97615 -10.79579 -10.65866 -10.48783 -9.98476 -9.82167 -9.49125 -9.25539 -9.02846 -8.63299 -7.74195 -6.18981 -4.21550 1.35214 1.86207 2.95894 3.28781 3.36462 3.42938 3.55482 3.71643 4.24120 4.36068 4.48344 4.61534 4.62800 4.91482 4.98097 5.08709 5.21126 5.26526 5.32857 5.45794 5.60685 5.64015 5.77605 5.84253 5.86523 5.96791 6.10073 6.12513 6.24297 6.29979 6.38539 6.45662 6.56483 6.87883 7.03702 7.39422 7.57728 8.02074 8.21516 8.43279 8.75657 8.84491 9.42598 10.92931 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.005101 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.297412 B = 5487.652110 C = 5977.033732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.223 3.777 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.569 5.569 13 C 0.088 3.912 14 C 0.582 3.418 15 O -0.541 6.541 16 C -0.003 4.003 17 N -0.331 5.331 18 O 0.116 5.884 19 C -0.049 4.049 20 C -0.154 4.154 21 C -0.044 4.044 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.032 4.032 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.267 0.733 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 0.035 20.800 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.123 3.877 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.700 3.300 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.187 1.187 12 N -0.300 5.300 13 C -0.056 4.056 14 C 0.366 3.634 15 O -0.418 6.418 16 C -0.162 4.162 17 N -0.036 5.036 18 O 0.046 5.954 19 C -0.114 4.114 20 C -0.158 4.158 21 C -0.082 4.082 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.070 4.070 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.389 -0.328 19.784 20.075 hybrid contribution 0.261 1.334 -0.101 1.363 sum 3.650 1.006 19.683 20.044 Atomic orbital electron populations 1.22219 0.97980 1.01055 0.99325 1.19436 0.91139 0.94848 0.82294 0.91644 1.21116 1.44861 0.95832 0.94594 0.90299 1.24958 0.93688 0.98561 0.95176 1.69891 1.44930 1.36106 1.01659 0.86904 0.79943 0.86002 0.77129 1.19607 1.21207 1.18688 1.48317 1.47315 1.12292 1.22054 1.21740 1.01252 0.82147 1.00413 1.16989 0.79712 0.86000 0.80662 1.90711 1.62026 1.14112 1.74964 1.23338 1.03044 0.90218 0.99571 1.74786 1.12924 1.15907 0.99970 1.84690 1.50085 1.33338 1.27333 1.24038 1.02105 0.85698 0.99522 1.20651 1.02126 0.98456 0.94599 1.19975 1.02383 0.89916 0.95911 1.21715 0.99192 0.98917 0.96168 1.21650 0.98334 0.92899 1.02757 1.20197 0.97245 0.99423 0.90111 0.95347 0.92967 0.92312 0.92310 0.92580 0.91860 0.90801 0.89336 0.89865 0.91496 0.90757 0.90259 0.91008 0.89016 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.06 37.16 0.34 -2.85 16 2 C 0.22 5.56 2.29 -69.08 -0.16 5.40 16 3 H 0.07 1.76 4.06 -51.93 -0.21 1.55 16 4 C -0.53 -14.84 8.82 -34.44 -0.30 -15.14 16 5 H 0.08 2.38 7.67 -52.48 -0.40 1.98 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 8 Si 0.87 22.27 26.99 -169.99 -4.59 17.68 16 9 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.43 6.81 56.52 0.38 -6.05 16 12 N -0.57 -12.96 2.75 -176.20 -0.48 -13.44 16 13 C 0.09 1.71 8.40 59.84 0.50 2.21 16 14 C 0.58 13.07 7.69 -12.11 -0.09 12.98 16 15 O -0.54 -13.28 15.52 5.37 0.08 -13.19 16 16 C 0.00 -0.06 6.79 -82.82 -0.56 -0.63 16 17 N -0.33 -5.76 9.01 33.29 0.30 -5.46 16 18 O 0.12 1.69 11.18 19.19 0.21 1.90 16 19 C -0.05 -0.62 7.38 -35.38 -0.26 -0.88 16 20 C -0.15 -2.35 6.04 -104.91 -0.63 -2.98 16 21 C -0.04 -0.58 5.64 -27.91 -0.16 -0.74 16 22 C -0.12 -1.06 5.92 -26.39 -0.16 -1.22 16 23 C -0.12 -0.85 5.88 -26.45 -0.16 -1.00 16 24 C -0.03 -0.24 6.31 -27.71 -0.17 -0.42 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.06 6.87 -51.93 -0.36 0.70 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.11 5.97 -51.93 -0.31 0.80 16 31 H 0.07 1.36 6.54 -51.93 -0.34 1.02 16 32 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -32.99 314.86 -6.28 -39.27 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.41 Total: -2.22 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.91 Total: -3.05 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.59 Total: -45.14 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.30 Total: -11.29 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.59 Total: 17.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.99 -6.28 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.129 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds