Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47047 * 2 1 4 4 C 1.50703 * 109.47257 * 240.00073 * 2 1 3 5 5 H 1.08004 * 119.99606 * 275.00622 * 4 2 1 6 6 C 1.37877 * 120.00163 * 95.00222 * 4 2 1 7 7 N 1.31516 * 119.99712 * 184.98531 * 6 4 2 8 8 Si 1.86798 * 119.99910 * 4.97748 * 6 4 2 9 9 H 1.48509 * 109.46746 * 84.96332 * 8 6 4 10 10 H 1.48496 * 109.47052 * 204.95909 * 8 6 4 11 11 H 1.48498 * 109.47330 * 324.96403 * 8 6 4 12 12 N 1.46503 * 109.47213 * 119.99733 * 2 1 3 13 13 C 1.46493 * 119.99873 * 60.00238 * 12 2 1 14 14 C 1.34774 * 120.00021 * 239.99484 * 12 2 1 15 15 O 1.21498 * 120.00167 * 5.54033 * 14 12 2 16 16 C 1.48332 * 119.99885 * 185.53261 * 14 12 2 17 17 N 1.31490 * 127.15666 * 5.30185 * 16 14 12 18 18 O 1.21428 * 111.52905 * 179.97438 * 17 16 14 19 19 C 1.33190 * 111.56972 * 359.96058 * 18 17 16 20 20 C 1.35379 * 106.63153 * 359.82643 * 19 18 17 21 21 C 1.50066 * 124.92985 * 179.43891 * 20 19 18 22 22 C 1.53544 * 108.29586 * 344.45499 * 21 20 19 23 23 C 1.53109 * 109.50915 * 48.97149 * 22 21 20 24 24 C 1.50597 * 129.60090 * 180.18835 * 19 18 17 25 25 H 1.09003 * 109.46656 * 294.97011 * 1 2 3 26 26 H 1.08994 * 109.46893 * 174.97647 * 1 2 3 27 27 H 1.08998 * 109.47089 * 54.96921 * 1 2 3 28 28 H 0.97000 * 119.99112 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47504 * 95.39976 * 13 12 2 30 30 H 1.08995 * 109.47309 * 215.40034 * 13 12 2 31 31 H 1.09000 * 109.47316 * 335.40225 * 13 12 2 32 32 H 1.08999 * 109.86070 * 224.64378 * 21 20 19 33 33 H 1.09001 * 109.49720 * 104.05186 * 21 20 19 34 34 H 1.09000 * 109.46457 * 288.96193 * 22 21 20 35 35 H 1.09000 * 109.46654 * 168.98448 * 22 21 20 36 36 H 1.08997 * 109.42547 * 170.06334 * 23 22 21 37 37 H 1.09002 * 109.38288 * 50.19305 * 23 22 21 38 38 H 1.08998 * 109.69289 * 282.91408 * 24 19 18 39 39 H 1.08991 * 109.69915 * 43.46992 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3581 7 7 2.7047 -0.6133 -3.4626 8 14 2.3153 1.8791 -2.3169 9 1 3.6029 2.3936 -1.7851 10 1 2.1042 2.3995 -3.6916 11 1 1.2033 2.3283 -1.4413 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7933 -0.0356 2.0833 15 8 3.0042 1.1529 1.9445 16 6 3.3885 -0.7656 3.2291 17 7 3.3344 -2.0587 3.4615 18 8 3.9205 -2.3527 4.4835 19 6 4.4482 -1.2802 5.0712 20 6 4.1350 -0.2181 4.2923 21 6 4.5197 1.2031 4.5822 22 6 4.9593 1.2936 6.0506 23 6 5.9651 0.1794 6.3528 24 6 5.2522 -1.1792 6.3405 25 1 -0.3633 0.4338 0.9317 26 1 -0.3633 -1.0237 -0.0900 27 1 -0.3633 0.5899 -0.8415 28 1 2.9351 -0.1049 -4.2559 29 1 2.4628 -2.7355 1.0564 30 1 1.5299 -2.2620 2.4964 31 1 0.7375 -2.3254 0.9038 32 1 3.6664 1.8597 4.4128 33 1 5.3446 1.4964 3.9328 34 1 4.0892 1.1828 6.6977 35 1 5.4252 2.2623 6.2312 36 1 6.4082 0.3476 7.3343 37 1 6.7489 0.1844 5.5954 38 1 4.5890 -1.2537 7.2023 39 1 5.9891 -1.9816 6.3735 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264110740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = 1.868492 kcal Electronic energy + Delta-G solvation = -22258.075673 eV Core-core repulsion = 18975.112444 eV Total energy + Delta-G solvation = -3282.963229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.18495 -40.88573 -38.61784 -37.34459 -35.29460 -34.53107 -32.29751 -31.97545 -31.04299 -27.98790 -27.36413 -26.17108 -25.02320 -23.70694 -22.52181 -20.96425 -20.01213 -19.27455 -18.90545 -18.29444 -17.70084 -17.27024 -16.42424 -16.05709 -15.88180 -15.03414 -14.89803 -14.78233 -14.61415 -14.44303 -14.25310 -14.15484 -14.05874 -13.39798 -13.29439 -13.18351 -13.09581 -12.69476 -12.43739 -12.22384 -11.87635 -11.85902 -11.82761 -11.60158 -11.39131 -11.27023 -11.13456 -10.86274 -10.10157 -9.58068 -8.43754 -6.49640 0.05026 0.64706 1.23438 1.29389 1.38072 1.81178 2.00491 2.10246 2.22317 2.82419 2.99752 3.47942 3.66405 3.92023 4.01616 4.04576 4.23079 4.27428 4.35876 4.37931 4.48626 4.54637 4.59778 4.66558 4.67409 4.86438 4.91263 4.94981 4.99802 5.02399 5.17733 5.21418 5.26012 5.35309 5.42648 5.45233 5.62229 6.03546 6.44962 6.55523 6.88797 7.07714 7.18895 8.71848 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.005101 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.297412 B = 5487.652110 C = 5977.033732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.223 3.777 3 H 0.047 0.953 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.927 3.073 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.247 1.247 12 N -0.581 5.581 13 C 0.095 3.905 14 C 0.575 3.425 15 O -0.571 6.571 16 C -0.039 4.039 17 N -0.347 5.347 18 O 0.133 5.867 19 C -0.022 4.022 20 C -0.175 4.175 21 C -0.046 4.046 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.031 4.031 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.271 0.729 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 0.169 24.184 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.121 3.879 3 H 0.065 0.935 4 C -0.565 4.565 5 H 0.066 0.934 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.752 3.248 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.171 1.171 12 N -0.311 5.311 13 C -0.047 4.047 14 C 0.362 3.638 15 O -0.451 6.451 16 C -0.195 4.195 17 N -0.049 5.049 18 O 0.059 5.941 19 C -0.086 4.086 20 C -0.181 4.181 21 C -0.084 4.084 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.069 4.069 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.796 -0.206 23.158 23.468 hybrid contribution 0.203 1.183 -1.034 1.585 sum 3.999 0.977 22.124 22.504 Atomic orbital electron populations 1.22087 0.95227 1.02064 1.00421 1.19293 0.93160 0.93505 0.81915 0.93534 1.21285 1.44483 0.94623 0.96095 0.93357 1.25657 0.93669 1.02698 0.94886 1.69991 1.46694 1.37816 1.02456 0.86044 0.79736 0.81068 0.77974 1.20865 1.19597 1.17080 1.48281 1.47777 1.13428 1.21639 1.21779 1.00989 0.80200 1.01760 1.17451 0.79039 0.85953 0.81379 1.90667 1.62897 1.15530 1.76036 1.23025 1.05420 0.91173 0.99903 1.74736 1.13784 1.15236 1.01131 1.84654 1.49185 1.33916 1.26359 1.24955 1.00053 0.83724 0.99893 1.20968 1.02568 1.00285 0.94262 1.20036 1.00976 0.88298 0.99102 1.21719 1.00199 1.00746 0.92628 1.21709 0.97463 0.91670 1.04508 1.20626 0.97662 1.00643 0.87966 0.93317 0.91865 0.92264 0.91988 0.93881 0.89841 0.89978 0.91690 0.91286 0.90556 0.89175 0.86589 0.91857 0.85995 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.94 9.06 71.98 0.65 -5.29 16 2 C 0.22 11.25 2.29 44.24 0.10 11.35 16 3 H 0.05 2.54 4.06 -2.38 -0.01 2.53 16 4 C -0.53 -30.57 8.82 25.60 0.23 -30.34 16 5 H 0.05 3.04 7.67 -2.91 -0.02 3.01 16 6 C 0.03 1.84 5.47 84.65 0.46 2.30 16 7 N -0.93 -58.03 13.96 21.45 0.30 -57.73 16 8 Si 0.93 46.66 26.99 68.60 1.85 48.51 16 9 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.25 -11.72 6.81 99.48 0.68 -11.04 16 12 N -0.58 -26.97 2.75 -829.67 -2.28 -29.26 16 13 C 0.10 3.74 8.40 127.77 1.07 4.81 16 14 C 0.58 26.57 7.69 86.93 0.67 27.24 16 15 O -0.57 -29.10 15.52 -3.71 -0.06 -29.16 16 16 C -0.04 -1.50 6.79 42.55 0.29 -1.21 16 17 N -0.35 -11.87 9.01 -48.95 -0.44 -12.31 16 18 O 0.13 3.60 11.18 78.69 0.88 4.48 16 19 C -0.02 -0.48 7.38 24.99 0.18 -0.30 16 20 C -0.18 -5.24 6.04 -20.05 -0.12 -5.36 16 21 C -0.05 -1.20 5.64 29.83 0.17 -1.03 16 22 C -0.12 -1.67 5.92 30.81 0.18 -1.49 16 23 C -0.12 -1.14 5.88 30.78 0.18 -0.96 16 24 C -0.03 -0.33 6.31 29.96 0.19 -0.14 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.51 6.87 -2.39 -0.02 2.50 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 2.91 5.97 -2.39 -0.01 2.90 16 31 H 0.08 3.02 6.54 -2.39 -0.02 3.01 16 32 H 0.06 1.94 7.94 -2.39 -0.02 1.92 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 38 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -75.18 314.86 5.54 -69.64 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.03 Total: 6.22 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 4.26 Total: -0.41 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -2.43 Total: -99.29 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.82 Total: -24.67 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.85 Total: 48.51 kcal Total: -75.18 5.54 -69.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.513 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds