Wall clock time and date at job start Tue Mar 31 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47571 * 2 1 4 4 O 1.42901 * 109.46823 * 119.99797 * 2 1 3 5 5 C 1.35685 * 116.99899 * 150.00016 * 4 2 1 6 6 C 1.38892 * 119.62339 * 180.02562 * 5 4 2 7 7 C 1.39577 * 118.94708 * 179.97438 * 6 5 4 8 8 C 1.48153 * 120.89201 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00191 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00235 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46997 * 35.00167 * 11 10 8 13 13 C 1.52995 * 109.47289 * 274.99969 * 11 10 8 14 14 C 1.50703 * 109.47196 * 154.99845 * 11 10 8 15 15 H 1.08000 * 119.99531 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00032 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00244 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99627 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47131 * 59.99517 * 18 16 14 20 20 H 1.48508 * 109.46893 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47391 * 299.99135 * 18 16 14 22 22 C 1.39969 * 118.21593 * 0.02562 * 7 6 5 23 23 C 1.37976 * 119.13210 * 359.97438 * 22 7 6 24 24 N 1.31902 * 120.98222 * 359.73074 * 23 22 7 25 25 H 1.09007 * 109.47226 * 300.00655 * 1 2 3 26 26 H 1.09008 * 109.47099 * 59.99927 * 1 2 3 27 27 H 1.08992 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47195 * 239.99884 * 2 1 3 29 29 H 1.08997 * 109.46956 * 59.99737 * 3 2 1 30 30 H 1.08992 * 109.47400 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46440 * 299.99665 * 3 2 1 32 32 H 1.07991 * 120.52645 * 0.02562 * 6 5 4 33 33 H 0.96992 * 119.99555 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.46842 * 299.99900 * 13 11 10 35 35 H 1.08995 * 109.47587 * 59.99803 * 13 11 10 36 36 H 1.09005 * 109.47212 * 179.97438 * 13 11 10 37 37 H 0.96993 * 120.00060 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.43117 * 179.97438 * 22 7 6 39 39 H 1.08010 * 119.50589 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1987 -1.3130 1.0654 6 6 3.7128 -1.9859 2.1663 7 6 4.9403 -2.6392 2.0461 8 6 5.5288 -3.3695 3.1929 9 8 4.9416 -3.4056 4.2562 10 7 6.7156 -3.9938 3.0570 11 6 7.2978 -4.7154 4.1912 12 1 6.5016 -5.1748 4.7769 13 6 8.0790 -3.7375 5.0711 14 6 8.2282 -5.7858 3.6815 15 1 8.3710 -5.9158 2.6189 16 6 8.8961 -6.5998 4.5716 17 7 8.7217 -6.4418 5.8655 18 14 10.0498 -7.9261 3.9397 19 1 11.1348 -7.2996 3.1425 20 1 10.6399 -8.6577 5.0894 21 1 9.2922 -8.8751 3.0849 22 6 5.6008 -2.5851 0.8132 23 6 5.0198 -1.8943 -0.2303 24 7 3.8551 -1.2933 -0.0818 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 3.1709 -2.0039 3.1003 33 1 7.1841 -3.9652 2.2082 34 1 8.8752 -3.2781 4.4854 35 1 7.4062 -2.9632 5.4398 36 1 8.5118 -4.2743 5.9153 37 1 9.1913 -7.0146 6.4917 38 1 6.5528 -3.0777 0.6805 39 1 5.5244 -1.8483 -1.1842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268406600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:12 Heat of formation + Delta-G solvation = -47.516125 kcal Electronic energy + Delta-G solvation = -21015.977399 eV Core-core repulsion = 17730.872692 eV Total energy + Delta-G solvation = -3285.104706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79986 -39.11836 -37.89209 -34.93397 -33.48128 -32.83661 -32.15599 -30.19362 -28.86391 -27.49250 -25.33351 -24.80484 -23.33563 -22.15884 -20.79563 -19.72449 -18.70810 -17.23127 -16.63308 -15.98842 -15.80312 -15.35646 -15.22873 -14.65634 -14.49361 -14.26546 -14.00613 -13.82061 -13.25150 -13.11406 -12.54577 -12.52822 -12.51025 -12.12962 -11.87768 -11.75590 -11.16303 -11.13483 -11.00897 -10.95438 -10.81504 -10.39203 -10.27687 -9.86545 -9.80277 -9.24824 -9.10841 -8.60474 -8.55214 -8.03207 -6.16473 -4.26516 0.84229 1.13872 2.85423 3.23301 3.28451 3.29154 3.30494 3.87552 4.02135 4.20008 4.32815 4.64863 4.75950 4.83325 4.98964 5.03956 5.13096 5.15510 5.18633 5.30184 5.49387 5.55312 5.60243 5.71511 5.81793 5.92637 5.96016 6.15628 6.33321 6.77399 6.90517 7.08195 7.20150 7.33498 7.47795 7.63016 7.75073 7.84697 8.08828 8.52521 8.69508 8.95696 9.40773 10.89558 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040010 B = 0.003247 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.650887 B = 8620.086689 C = 8939.711485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.168 4.168 4 O -0.301 6.301 5 C 0.317 3.683 6 C -0.138 4.138 7 C -0.040 4.040 8 C 0.541 3.459 9 O -0.540 6.540 10 N -0.695 5.695 11 C 0.264 3.736 12 H 0.051 0.949 13 C -0.148 4.148 14 C -0.537 4.537 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.183 4.183 23 C 0.134 3.866 24 N -0.534 5.534 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.390 0.610 34 H 0.028 0.972 35 H 0.016 0.984 36 H 0.092 0.908 37 H 0.266 0.734 38 H 0.144 0.856 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.799 11.851 -13.624 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.208 6.208 5 C 0.139 3.861 6 C -0.160 4.160 7 C -0.051 4.051 8 C 0.325 3.675 9 O -0.419 6.419 10 N -0.342 5.342 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.207 4.207 14 C -0.575 4.575 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.520 5.520 18 Si 0.730 3.270 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.204 4.204 23 C -0.021 4.021 24 N -0.258 5.258 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.161 0.839 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.679 12.182 -13.106 20.838 hybrid contribution 1.343 -1.066 -0.251 1.733 sum -9.336 11.116 -13.357 19.726 Atomic orbital electron populations 1.21909 0.92973 1.03046 1.02886 1.22328 0.94380 0.92713 0.88116 1.22215 1.02196 0.95696 1.02469 1.86318 1.31599 1.64433 1.38473 1.19618 0.86314 0.90672 0.89525 1.21155 0.96311 0.99130 0.99391 1.20537 0.93952 0.95858 0.94742 1.18086 0.82317 0.80200 0.86936 1.90747 1.61667 1.61527 1.27922 1.46504 1.19504 1.51317 1.16922 1.18835 0.93124 0.88997 0.82785 0.93071 1.22090 0.98608 0.98023 1.01944 1.21154 1.26677 1.16376 0.93335 0.92020 1.24884 0.96609 0.97368 0.94764 1.69884 1.42206 1.38784 1.01098 0.86483 0.80715 0.81419 0.78339 1.20112 1.21087 1.20126 1.22234 1.02302 1.02607 0.93265 1.22305 0.89537 0.91567 0.98736 1.67084 1.10679 1.23539 1.24527 0.91613 0.90593 0.91780 0.89265 0.91985 0.91959 0.91225 0.83004 0.77640 0.95315 0.96529 0.88943 0.92411 0.83878 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.56 37.16 0.36 -0.83 16 2 C 0.08 0.83 3.11 -26.73 -0.08 0.74 16 3 C -0.17 -1.51 9.53 37.16 0.35 -1.16 16 4 O -0.30 -4.02 9.76 -18.76 -0.18 -4.20 16 5 C 0.32 4.56 7.45 -17.16 -0.13 4.43 16 6 C -0.14 -2.19 9.61 -38.84 -0.37 -2.56 16 7 C -0.04 -0.65 5.91 -104.68 -0.62 -1.27 16 8 C 0.54 11.04 7.76 -12.19 -0.09 10.94 16 9 O -0.54 -13.06 16.10 5.35 0.09 -12.97 16 10 N -0.69 -14.32 5.03 -55.78 -0.28 -14.60 16 11 C 0.26 6.63 2.56 -69.09 -0.18 6.46 16 12 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.15 -3.65 9.26 37.15 0.34 -3.30 16 14 C -0.54 -13.97 8.73 -34.44 -0.30 -14.28 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 18 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 22 C -0.18 -2.35 9.61 -39.03 -0.38 -2.73 16 23 C 0.13 1.53 11.16 -17.62 -0.20 1.33 16 24 N -0.53 -6.97 8.61 -13.38 -0.12 -7.09 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.94 6.97 -51.93 -0.36 0.58 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 2.47 7.74 -52.49 -0.41 2.06 16 33 H 0.39 6.79 6.68 -40.82 -0.27 6.52 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.14 1.55 6.53 -52.48 -0.34 1.20 16 39 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -30.72 332.06 -6.71 -37.43 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.44 Total: 5.61 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.39 Total: -0.53 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.23 Total: -45.63 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.10 Total: -17.17 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.72 -6.71 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268406600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds