Wall clock time and date at job start Tue Mar 31 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47571 * 2 1 4 4 O 1.42901 * 109.46823 * 119.99797 * 2 1 3 5 5 C 1.35685 * 116.99899 * 150.00016 * 4 2 1 6 6 C 1.38892 * 119.62339 * 180.02562 * 5 4 2 7 7 C 1.39577 * 118.94708 * 179.97438 * 6 5 4 8 8 C 1.48153 * 120.89201 * 179.97438 * 7 6 5 9 9 O 1.21514 * 120.00191 * 0.02562 * 8 7 6 10 10 N 1.34785 * 120.00235 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00126 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46997 * 35.00167 * 11 10 8 13 13 C 1.52995 * 109.47289 * 274.99969 * 11 10 8 14 14 C 1.50703 * 109.47196 * 154.99845 * 11 10 8 15 15 H 1.08000 * 119.99531 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00032 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00244 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99627 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47131 * 59.99517 * 18 16 14 20 20 H 1.48508 * 109.46893 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47391 * 299.99135 * 18 16 14 22 22 C 1.39969 * 118.21593 * 0.02562 * 7 6 5 23 23 C 1.37976 * 119.13210 * 359.97438 * 22 7 6 24 24 N 1.31902 * 120.98222 * 359.73074 * 23 22 7 25 25 H 1.09007 * 109.47226 * 300.00655 * 1 2 3 26 26 H 1.09008 * 109.47099 * 59.99927 * 1 2 3 27 27 H 1.08992 * 109.47624 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47195 * 239.99884 * 2 1 3 29 29 H 1.08997 * 109.46956 * 59.99737 * 3 2 1 30 30 H 1.08992 * 109.47400 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46440 * 299.99665 * 3 2 1 32 32 H 1.07991 * 120.52645 * 0.02562 * 6 5 4 33 33 H 0.96992 * 119.99555 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.46842 * 299.99900 * 13 11 10 35 35 H 1.08995 * 109.47587 * 59.99803 * 13 11 10 36 36 H 1.09005 * 109.47212 * 179.97438 * 13 11 10 37 37 H 0.96993 * 120.00060 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.43117 * 179.97438 * 22 7 6 39 39 H 1.08010 * 119.50589 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1987 -1.3130 1.0654 6 6 3.7128 -1.9859 2.1663 7 6 4.9403 -2.6392 2.0461 8 6 5.5288 -3.3695 3.1929 9 8 4.9416 -3.4056 4.2562 10 7 6.7156 -3.9938 3.0570 11 6 7.2978 -4.7154 4.1912 12 1 6.5016 -5.1748 4.7769 13 6 8.0790 -3.7375 5.0711 14 6 8.2282 -5.7858 3.6815 15 1 8.3710 -5.9158 2.6189 16 6 8.8961 -6.5998 4.5716 17 7 8.7217 -6.4418 5.8655 18 14 10.0498 -7.9261 3.9397 19 1 11.1348 -7.2996 3.1425 20 1 10.6399 -8.6577 5.0894 21 1 9.2922 -8.8751 3.0849 22 6 5.6008 -2.5851 0.8132 23 6 5.0198 -1.8943 -0.2303 24 7 3.8551 -1.2933 -0.0818 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6768 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 3.1709 -2.0039 3.1003 33 1 7.1841 -3.9652 2.2082 34 1 8.8752 -3.2781 4.4854 35 1 7.4062 -2.9632 5.4398 36 1 8.5118 -4.2743 5.9153 37 1 9.1913 -7.0146 6.4917 38 1 6.5528 -3.0777 0.6805 39 1 5.5244 -1.8483 -1.1842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268406600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:11 Heat of formation + Delta-G solvation = -68.843450 kcal Electronic energy + Delta-G solvation = -21016.902221 eV Core-core repulsion = 17730.872692 eV Total energy + Delta-G solvation = -3286.029529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92143 -40.58985 -39.03752 -36.83124 -34.60163 -34.21298 -33.62978 -31.36179 -30.61971 -28.15347 -27.36591 -26.12227 -24.40614 -23.46952 -22.19369 -21.27742 -20.05809 -18.53513 -18.08909 -17.45055 -16.86741 -16.78615 -16.71724 -16.15972 -15.90334 -15.40113 -15.23927 -14.84473 -14.72293 -14.45161 -14.14801 -13.72603 -13.28287 -13.18243 -13.01985 -12.99372 -12.91069 -12.83759 -12.74714 -12.28254 -12.16500 -11.92396 -11.77438 -11.23774 -11.15177 -11.02832 -10.65210 -10.59348 -9.87404 -9.57914 -8.18017 -6.36209 -0.38354 0.09047 1.46811 1.48979 1.56687 1.84079 1.87572 2.31576 2.51108 2.78338 3.12900 3.25372 3.61981 3.88521 3.92076 3.99768 4.04595 4.08063 4.29476 4.60348 4.68059 4.70914 4.76475 4.84214 4.86182 4.89728 4.90320 5.03979 5.05978 5.20689 5.27522 5.35890 5.38192 5.54314 5.64751 5.85624 6.05981 6.22943 6.68941 6.71405 6.80365 7.25421 7.40976 8.88417 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040010 B = 0.003247 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.650887 B = 8620.086689 C = 8939.711485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.164 4.164 4 O -0.316 6.316 5 C 0.316 3.684 6 C -0.158 4.158 7 C -0.055 4.055 8 C 0.540 3.460 9 O -0.588 6.588 10 N -0.687 5.687 11 C 0.270 3.730 12 H 0.001 0.999 13 C -0.136 4.136 14 C -0.549 4.549 15 H 0.078 0.922 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.975 3.025 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.270 1.270 22 C -0.173 4.173 23 C 0.149 3.851 24 N -0.529 5.529 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.408 0.592 34 H 0.044 0.956 35 H 0.011 0.989 36 H 0.069 0.931 37 H 0.266 0.734 38 H 0.169 0.831 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 12.382 -17.184 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.221 4.221 4 O -0.224 6.224 5 C 0.138 3.862 6 C -0.180 4.180 7 C -0.066 4.066 8 C 0.326 3.674 9 O -0.470 6.470 10 N -0.336 5.336 11 C 0.167 3.833 12 H 0.019 0.981 13 C -0.195 4.195 14 C -0.587 4.587 15 H 0.096 0.904 16 C -0.186 4.186 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.195 1.195 22 C -0.194 4.194 23 C -0.006 4.006 24 N -0.253 5.253 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.245 0.755 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.186 0.814 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.932 12.741 -16.712 23.244 hybrid contribution 1.032 -1.166 0.804 1.752 sum -8.900 11.575 -15.909 21.593 Atomic orbital electron populations 1.21935 0.91236 1.03135 1.04133 1.22659 0.95755 0.93032 0.86906 1.22193 1.01215 0.95062 1.03632 1.86311 1.31206 1.64512 1.40332 1.19548 0.86770 0.90524 0.89337 1.21052 0.96689 1.00672 0.99608 1.20145 0.94761 0.97073 0.94614 1.18681 0.81673 0.79473 0.87556 1.90715 1.62794 1.63176 1.30328 1.46178 1.19841 1.50967 1.16627 1.18449 0.91630 0.89471 0.83783 0.98128 1.21922 0.98714 0.97479 1.01339 1.21503 1.26457 1.16522 0.94214 0.90353 1.25820 0.98243 0.99657 0.94837 1.70044 1.43259 1.39835 1.02469 0.85360 0.78699 0.78388 0.77671 1.18599 1.21374 1.19527 1.22510 1.02818 1.02198 0.91825 1.23089 0.88514 0.89170 0.99866 1.67245 1.11195 1.23364 1.23518 0.91721 0.87955 0.92293 0.89373 0.92181 0.93383 0.88710 0.84881 0.75467 0.93659 0.97005 0.91208 0.92477 0.81399 0.77172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.56 71.98 0.69 -1.38 16 2 C 0.07 1.36 3.11 30.59 0.10 1.45 16 3 C -0.16 -2.63 9.53 71.98 0.69 -1.95 16 4 O -0.32 -8.35 9.76 -90.03 -0.88 -9.23 16 5 C 0.32 8.89 7.45 84.80 0.63 9.53 16 6 C -0.16 -5.14 9.61 22.75 0.22 -4.92 16 7 C -0.06 -1.79 5.91 -19.90 -0.12 -1.91 16 8 C 0.54 22.66 7.76 86.88 0.67 23.33 16 9 O -0.59 -30.19 16.10 -3.76 -0.06 -30.25 16 10 N -0.69 -28.40 5.03 -448.69 -2.26 -30.65 16 11 C 0.27 13.91 2.56 44.25 0.11 14.02 16 12 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 13 C -0.14 -6.86 9.26 71.98 0.67 -6.19 16 14 C -0.55 -28.41 8.73 25.60 0.22 -28.19 16 15 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.01 0.78 5.30 84.66 0.45 1.22 16 17 N -0.92 -52.22 11.32 21.45 0.24 -51.97 16 18 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 C -0.17 -3.97 9.61 22.63 0.22 -3.75 16 23 C 0.15 2.83 11.16 84.62 0.94 3.77 16 24 N -0.53 -12.49 8.61 -309.13 -2.66 -15.15 16 25 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.68 6.97 -2.39 -0.02 1.66 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.13 4.70 7.74 -2.91 -0.02 4.68 16 33 H 0.41 13.56 6.68 -92.71 -0.62 12.94 16 34 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 3.85 6.07 -2.38 -0.01 3.84 16 37 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.17 2.96 6.53 -2.91 -0.02 2.94 16 39 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -69.54 332.06 2.34 -67.20 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.44 Total: 21.91 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.49 Total: 5.05 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -4.67 Total: -97.78 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.94 Total: -39.48 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -69.54 2.34 -67.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268406600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.642 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds