Wall clock time and date at job start Tue Mar 31 2020 00:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 O 1.42892 * 109.47041 * 120.00355 * 2 1 3 5 5 C 1.35684 * 116.99816 * 150.00301 * 4 2 1 6 6 C 1.38892 * 119.62386 * 179.97438 * 5 4 2 7 7 C 1.39573 * 118.95095 * 179.97438 * 6 5 4 8 8 C 1.48155 * 120.89474 * 180.02562 * 7 6 5 9 9 O 1.21507 * 120.00322 * 19.68100 * 8 7 6 10 10 N 1.34780 * 120.00142 * 199.68508 * 8 7 6 11 11 C 1.46501 * 119.99918 * 7.04541 * 10 8 7 12 12 C 1.46496 * 120.00274 * 187.04837 * 10 8 7 13 13 C 1.50702 * 109.47323 * 269.99803 * 12 10 8 14 14 H 1.08002 * 119.99631 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00196 * 179.97438 * 13 12 10 16 16 N 1.31508 * 119.99977 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99741 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47061 * 90.00284 * 17 15 13 19 19 H 1.48498 * 109.46733 * 209.99514 * 17 15 13 20 20 H 1.48498 * 109.47416 * 330.00058 * 17 15 13 21 21 C 1.39969 * 118.21281 * 0.27203 * 7 6 5 22 22 C 1.37980 * 119.13546 * 359.47594 * 21 7 6 23 23 N 1.31910 * 120.97159 * 0.53856 * 22 21 7 24 24 H 1.09004 * 109.47476 * 299.99872 * 1 2 3 25 25 H 1.09007 * 109.47636 * 59.99623 * 1 2 3 26 26 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46740 * 240.00232 * 2 1 3 28 28 H 1.08993 * 109.47196 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47160 * 300.00126 * 3 2 1 30 30 H 1.08997 * 109.46879 * 60.00178 * 3 2 1 31 31 H 1.08005 * 120.53000 * 359.96907 * 6 5 4 32 32 H 1.09000 * 109.47256 * 264.72070 * 11 10 8 33 33 H 1.09000 * 109.47127 * 24.71362 * 11 10 8 34 34 H 1.08998 * 109.47401 * 144.71421 * 11 10 8 35 35 H 1.08999 * 109.47074 * 149.99349 * 12 10 8 36 36 H 1.09000 * 109.47014 * 29.99601 * 12 10 8 37 37 H 0.96999 * 120.00074 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.43417 * 179.73019 * 21 7 6 39 39 H 1.07998 * 119.51486 * 180.27124 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1988 -1.3130 1.0651 6 6 3.7134 -1.9850 2.1663 7 6 4.9409 -2.6383 2.0460 8 6 5.5296 -3.3687 3.1928 9 8 4.8239 -3.7153 4.1192 10 7 6.8479 -3.6486 3.2085 11 6 7.7257 -3.0998 2.1719 12 6 7.4031 -4.5018 4.2620 13 6 7.8275 -3.6475 5.4287 14 1 7.6970 -2.5761 5.3891 15 6 8.3822 -4.2336 6.5467 16 7 8.7530 -3.4880 7.5645 17 14 8.6071 -6.0868 6.6153 18 1 9.9419 -6.4439 6.0711 19 1 8.5083 -6.5454 8.0243 20 1 7.5502 -6.7441 5.8054 21 6 5.6034 -2.5806 0.8144 22 6 5.0194 -1.8951 -0.2311 23 7 3.8573 -1.2893 -0.0806 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1725 -2.0018 3.1009 32 1 7.8490 -3.8328 1.3747 33 1 7.2826 -2.1911 1.7644 34 1 8.6984 -2.8671 2.6052 35 1 8.2666 -5.0424 3.8744 36 1 6.6457 -5.2139 4.5897 37 1 9.1430 -3.9003 8.3512 38 1 6.5573 -3.0696 0.6828 39 1 5.5231 -1.8503 -1.1853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268410585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:32 Heat of formation + Delta-G solvation = -11.853409 kcal Electronic energy + Delta-G solvation = -21324.679125 eV Core-core repulsion = 18041.120870 eV Total energy + Delta-G solvation = -3283.558255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89688 -39.31924 -37.87785 -35.25696 -33.46082 -32.97930 -32.18103 -30.31855 -28.46284 -27.47397 -26.55699 -24.66295 -23.28465 -22.55472 -21.23070 -19.56014 -18.05412 -17.12607 -16.96616 -16.15749 -15.83075 -15.67467 -15.31220 -14.84552 -14.40867 -14.20458 -14.06510 -13.82254 -13.23852 -13.10591 -12.73987 -12.54643 -12.52693 -12.40483 -12.29664 -12.10230 -11.71758 -11.22827 -11.12488 -11.03420 -10.84361 -10.58189 -10.15868 -9.88538 -9.78503 -9.56938 -9.17161 -8.62249 -8.49858 -7.84304 -6.11060 -4.10589 0.85615 1.13582 2.84599 3.24591 3.25846 3.33304 3.36770 3.65511 3.95327 4.19149 4.37003 4.64253 4.68588 4.77536 4.92705 5.00525 5.03628 5.13375 5.21600 5.31629 5.46194 5.51829 5.57789 5.62094 5.64769 5.70378 5.75703 5.90778 5.98094 6.09135 6.13712 6.32052 6.58818 6.87344 7.18788 7.21577 7.55581 7.75730 8.05735 8.41589 8.75524 8.92791 9.48002 11.02311 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003654 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.636519 B = 7660.168434 C = 7960.986168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.168 4.168 4 O -0.300 6.300 5 C 0.318 3.682 6 C -0.137 4.137 7 C -0.039 4.039 8 C 0.546 3.454 9 O -0.521 6.521 10 N -0.585 5.585 11 C 0.065 3.935 12 C 0.216 3.784 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.264 1.264 21 C -0.205 4.205 22 C 0.130 3.870 23 N -0.534 5.534 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.151 0.849 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.165 0.835 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 5.311 -19.745 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.208 6.208 5 C 0.139 3.861 6 C -0.158 4.158 7 C -0.050 4.050 8 C 0.331 3.669 9 O -0.397 6.397 10 N -0.316 5.316 11 C -0.078 4.078 12 C 0.096 3.904 13 C -0.569 4.569 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.225 4.225 22 C -0.025 4.025 23 N -0.258 5.258 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.182 0.818 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.186 5.576 -19.506 22.700 hybrid contribution 0.714 -1.178 0.681 1.537 sum -9.472 4.398 -18.825 21.527 Atomic orbital electron populations 1.21910 0.92992 1.03015 1.02904 1.22322 0.94363 0.92731 0.88078 1.22216 1.02221 0.95677 1.02484 1.86321 1.31569 1.64425 1.38470 1.19585 0.86300 0.90725 0.89513 1.21155 0.96163 0.99057 0.99452 1.20402 0.93861 0.95911 0.94848 1.18027 0.82744 0.80661 0.85426 1.90777 1.60437 1.52738 1.35781 1.47713 1.06066 1.49435 1.28428 1.22356 0.96338 0.98096 0.91035 1.19743 0.94037 0.90558 0.86036 1.21299 1.40756 0.95701 0.99158 0.90658 1.24859 0.94820 0.98087 0.95211 1.69891 1.41876 1.35559 1.06062 0.86862 0.78917 0.86056 0.77997 1.20040 1.20860 1.18833 1.23140 1.03083 1.03144 0.93153 1.22350 0.89550 0.92051 0.98593 1.67062 1.10766 1.23428 1.24557 0.91582 0.90606 0.91813 0.89312 0.91937 0.91238 0.91953 0.83091 0.92732 0.90331 0.90418 0.95206 0.94011 0.92488 0.81778 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.56 37.16 0.36 -0.86 16 2 C 0.08 0.85 3.11 -26.73 -0.08 0.76 16 3 C -0.17 -1.56 9.53 37.16 0.35 -1.20 16 4 O -0.30 -4.10 9.76 -18.75 -0.18 -4.28 16 5 C 0.32 4.63 7.45 -17.16 -0.13 4.50 16 6 C -0.14 -2.22 9.61 -38.84 -0.37 -2.59 16 7 C -0.04 -0.65 5.60 -104.68 -0.59 -1.24 16 8 C 0.55 11.43 7.55 -12.19 -0.09 11.34 16 9 O -0.52 -13.12 16.26 5.36 0.09 -13.03 16 10 N -0.59 -11.92 2.86 -183.97 -0.53 -12.44 16 11 C 0.06 0.94 8.67 59.85 0.52 1.46 16 12 C 0.22 5.21 4.20 -5.19 -0.02 5.18 16 13 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C -0.21 -2.56 7.71 -39.03 -0.30 -2.86 16 22 C 0.13 1.43 11.17 -17.61 -0.20 1.24 16 23 N -0.53 -6.94 8.61 -13.38 -0.12 -7.05 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.94 6.98 -51.93 -0.36 0.58 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.15 2.56 7.86 -52.48 -0.41 2.14 16 32 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 33 H 0.08 1.00 5.07 -51.93 -0.26 0.73 16 34 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 36 H 0.04 1.08 6.58 -51.93 -0.34 0.74 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.17 1.69 4.15 -52.49 -0.22 1.47 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -34.58 325.93 -6.04 -40.62 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.33 Total: -0.71 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.99 Total: 2.20 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.13 Total: -46.31 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.10 Total: -17.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.58 -6.04 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268410585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.765 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds