Wall clock time and date at job start Tue Mar 31 2020 00:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 O 1.42892 * 109.47041 * 120.00355 * 2 1 3 5 5 C 1.35684 * 116.99816 * 150.00301 * 4 2 1 6 6 C 1.38892 * 119.62386 * 179.97438 * 5 4 2 7 7 C 1.39573 * 118.95095 * 179.97438 * 6 5 4 8 8 C 1.48155 * 120.89474 * 180.02562 * 7 6 5 9 9 O 1.21507 * 120.00322 * 19.68100 * 8 7 6 10 10 N 1.34780 * 120.00142 * 199.68508 * 8 7 6 11 11 C 1.46501 * 119.99918 * 7.04541 * 10 8 7 12 12 C 1.46496 * 120.00274 * 187.04837 * 10 8 7 13 13 C 1.50702 * 109.47323 * 269.99803 * 12 10 8 14 14 H 1.08002 * 119.99631 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00196 * 179.97438 * 13 12 10 16 16 N 1.31508 * 119.99977 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99741 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47061 * 90.00284 * 17 15 13 19 19 H 1.48498 * 109.46733 * 209.99514 * 17 15 13 20 20 H 1.48498 * 109.47416 * 330.00058 * 17 15 13 21 21 C 1.39969 * 118.21281 * 0.27203 * 7 6 5 22 22 C 1.37980 * 119.13546 * 359.47594 * 21 7 6 23 23 N 1.31910 * 120.97159 * 0.53856 * 22 21 7 24 24 H 1.09004 * 109.47476 * 299.99872 * 1 2 3 25 25 H 1.09007 * 109.47636 * 59.99623 * 1 2 3 26 26 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46740 * 240.00232 * 2 1 3 28 28 H 1.08993 * 109.47196 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47160 * 300.00126 * 3 2 1 30 30 H 1.08997 * 109.46879 * 60.00178 * 3 2 1 31 31 H 1.08005 * 120.53000 * 359.96907 * 6 5 4 32 32 H 1.09000 * 109.47256 * 264.72070 * 11 10 8 33 33 H 1.09000 * 109.47127 * 24.71362 * 11 10 8 34 34 H 1.08998 * 109.47401 * 144.71421 * 11 10 8 35 35 H 1.08999 * 109.47074 * 149.99349 * 12 10 8 36 36 H 1.09000 * 109.47014 * 29.99601 * 12 10 8 37 37 H 0.96999 * 120.00074 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.43417 * 179.73019 * 21 7 6 39 39 H 1.07998 * 119.51486 * 180.27124 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1988 -1.3130 1.0651 6 6 3.7134 -1.9850 2.1663 7 6 4.9409 -2.6383 2.0460 8 6 5.5296 -3.3687 3.1928 9 8 4.8239 -3.7153 4.1192 10 7 6.8479 -3.6486 3.2085 11 6 7.7257 -3.0998 2.1719 12 6 7.4031 -4.5018 4.2620 13 6 7.8275 -3.6475 5.4287 14 1 7.6970 -2.5761 5.3891 15 6 8.3822 -4.2336 6.5467 16 7 8.7530 -3.4880 7.5645 17 14 8.6071 -6.0868 6.6153 18 1 9.9419 -6.4439 6.0711 19 1 8.5083 -6.5454 8.0243 20 1 7.5502 -6.7441 5.8054 21 6 5.6034 -2.5806 0.8144 22 6 5.0194 -1.8951 -0.2311 23 7 3.8573 -1.2893 -0.0806 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1725 -2.0018 3.1009 32 1 7.8490 -3.8328 1.3747 33 1 7.2826 -2.1911 1.7644 34 1 8.6984 -2.8671 2.6052 35 1 8.2666 -5.0424 3.8744 36 1 6.6457 -5.2139 4.5897 37 1 9.1430 -3.9003 8.3512 38 1 6.5573 -3.0696 0.6828 39 1 5.5231 -1.8503 -1.1853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268410585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:32 Heat of formation + Delta-G solvation = -37.551458 kcal Electronic energy + Delta-G solvation = -21325.793476 eV Core-core repulsion = 18041.120870 eV Total energy + Delta-G solvation = -3284.672606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04134 -40.69378 -39.01732 -36.92612 -34.91699 -34.23895 -33.68253 -31.48465 -30.22719 -28.16358 -27.93071 -26.11845 -24.37183 -24.11078 -22.37036 -20.84195 -19.32098 -19.17715 -18.25503 -17.41987 -17.05661 -16.93896 -16.70684 -16.29479 -15.81182 -15.41111 -15.30017 -14.87138 -14.75066 -14.35422 -14.12300 -13.97963 -13.75994 -13.49380 -13.26310 -13.18481 -12.99066 -12.84439 -12.46785 -12.33338 -12.00513 -11.91417 -11.79135 -11.72817 -11.26126 -10.98316 -10.83040 -10.52692 -9.56692 -9.48482 -8.34934 -6.41308 -0.35783 0.09467 1.32676 1.37840 1.48356 1.71127 1.90529 2.25205 2.31311 2.75542 2.99042 3.23061 3.41598 3.87540 3.89844 3.98923 4.03624 4.05127 4.28895 4.33841 4.56546 4.59780 4.63595 4.70069 4.75561 4.84198 4.85308 4.88664 4.91656 4.95101 5.06026 5.20515 5.26812 5.37009 5.42359 5.52161 6.19624 6.23829 6.49197 6.60337 6.72857 7.10759 7.25492 8.82409 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003654 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.636519 B = 7660.168434 C = 7960.986168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 C -0.164 4.164 4 O -0.318 6.318 5 C 0.316 3.684 6 C -0.164 4.164 7 C -0.055 4.055 8 C 0.537 3.463 9 O -0.583 6.583 10 N -0.591 5.591 11 C 0.054 3.946 12 C 0.223 3.777 13 C -0.541 4.541 14 H 0.024 0.976 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.952 3.048 18 H -0.246 1.246 19 H -0.284 1.284 20 H -0.253 1.253 21 C -0.190 4.190 22 C 0.148 3.852 23 N -0.529 5.529 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.022 0.978 37 H 0.269 0.731 38 H 0.195 0.805 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 4.477 -23.709 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.221 4.221 4 O -0.226 6.226 5 C 0.138 3.862 6 C -0.186 4.186 7 C -0.066 4.066 8 C 0.325 3.675 9 O -0.464 6.464 10 N -0.321 5.321 11 C -0.086 4.086 12 C 0.101 3.899 13 C -0.579 4.579 14 H 0.043 0.957 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.774 3.226 18 H -0.170 1.170 19 H -0.210 1.210 20 H -0.177 1.177 21 C -0.210 4.210 22 C -0.008 4.008 23 N -0.253 5.253 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.211 0.789 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.384 4.777 -23.525 25.774 hybrid contribution 0.444 -0.766 1.841 2.043 sum -8.940 4.011 -21.684 23.795 Atomic orbital electron populations 1.21939 0.91290 1.03135 1.04091 1.22656 0.95717 0.92985 0.86922 1.22196 1.01240 0.95134 1.03570 1.86311 1.31303 1.64553 1.40430 1.19489 0.86748 0.90586 0.89357 1.21025 0.96826 1.01212 0.99537 1.20066 0.94532 0.97042 0.94953 1.18768 0.82708 0.80041 0.85993 1.90725 1.61920 1.55276 1.38447 1.47808 1.06684 1.48923 1.28663 1.22788 0.94898 1.00284 0.90645 1.19460 0.94367 0.90167 0.85863 1.21540 1.40820 0.94004 1.01555 0.95748 1.25920 0.94251 1.04247 0.94465 1.70059 1.43262 1.38286 1.07046 0.85652 0.80333 0.78448 0.78159 1.17016 1.20956 1.17702 1.23429 1.03640 1.02555 0.91351 1.23238 0.88348 0.89312 0.99878 1.67234 1.11433 1.23323 1.23325 0.91896 0.87871 0.92250 0.89181 0.93358 0.88607 0.92409 0.85695 0.87771 0.88287 0.91159 0.91912 0.96003 0.92204 0.78865 0.76725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.56 71.98 0.69 -1.47 16 2 C 0.07 1.41 3.11 30.59 0.10 1.51 16 3 C -0.16 -2.77 9.53 71.98 0.69 -2.09 16 4 O -0.32 -8.76 9.76 -90.02 -0.88 -9.64 16 5 C 0.32 9.13 7.45 84.80 0.63 9.76 16 6 C -0.16 -5.58 9.61 22.75 0.22 -5.36 16 7 C -0.06 -1.82 5.60 -19.90 -0.11 -1.93 16 8 C 0.54 23.21 7.55 86.88 0.66 23.86 16 9 O -0.58 -31.37 16.26 -3.74 -0.06 -31.43 16 10 N -0.59 -23.92 2.86 -854.24 -2.44 -26.36 16 11 C 0.05 1.43 8.67 127.77 1.11 2.54 16 12 C 0.22 10.75 4.20 85.63 0.36 11.11 16 13 C -0.54 -32.13 9.94 25.60 0.25 -31.88 16 14 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 15 C 0.01 0.54 5.47 84.66 0.46 1.00 16 16 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 17 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 18 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 20 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 21 C -0.19 -4.10 7.71 22.63 0.17 -3.92 16 22 C 0.15 2.60 11.17 84.62 0.94 3.55 16 23 N -0.53 -12.34 8.61 -309.14 -2.66 -15.01 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.72 6.98 -2.39 -0.02 1.70 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.13 4.75 7.86 -2.91 -0.02 4.73 16 32 H 0.10 1.76 7.16 -2.39 -0.02 1.75 16 33 H 0.10 2.19 5.07 -2.39 -0.01 2.18 16 34 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 35 H 0.06 2.62 7.50 -2.39 -0.02 2.60 16 36 H 0.02 1.14 6.58 -2.39 -0.02 1.13 16 37 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.19 2.95 4.15 -2.91 -0.01 2.94 16 39 H 0.22 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -82.70 325.93 3.31 -79.39 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.00 Total: 10.60 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 6.17 Total: 6.69 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.80 Total: -101.47 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.94 Total: -41.07 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -82.70 3.31 -79.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268410585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.843 kcal (2) G-P(sol) polarization free energy of solvation -82.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds