Wall clock time and date at job start Tue Mar 31 2020 00:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99844 * 2 1 4 4 C 1.53000 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47233 * 185.00216 * 4 3 2 6 6 C 1.53001 * 109.47245 * 304.99999 * 4 3 2 7 7 N 1.46503 * 109.47036 * 64.99985 * 4 3 2 8 8 C 1.39636 * 119.99768 * 154.99927 * 7 4 3 9 9 C 1.38759 * 120.12036 * 0.02562 * 8 7 4 10 10 C 1.38173 * 120.00266 * 179.97438 * 9 8 7 11 11 C 1.38454 * 120.25616 * 0.02562 * 10 9 8 12 12 C 1.38083 * 120.24558 * 359.97392 * 11 10 9 13 13 C 1.38929 * 119.98612 * 0.30598 * 12 11 10 14 14 N 1.39479 * 120.12410 * 179.69618 * 13 12 11 15 15 C 1.34778 * 120.00267 * 24.86834 * 14 13 12 16 16 O 1.21798 * 119.99737 * 5.52001 * 15 14 13 17 17 C 1.41718 * 120.00211 * 185.52102 * 15 14 13 18 18 H 1.07996 * 120.00194 * 5.01967 * 17 15 14 19 19 C 1.40151 * 119.99921 * 185.02153 * 17 15 14 20 20 N 1.30621 * 119.99865 * 354.97551 * 19 17 15 21 21 Si 1.86799 * 119.99726 * 174.97588 * 19 17 15 22 22 H 1.48500 * 109.47042 * 94.99907 * 21 19 17 23 23 H 1.48505 * 109.47080 * 214.99534 * 21 19 17 24 24 H 1.48492 * 109.47429 * 335.00112 * 21 19 17 25 25 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46883 * 299.99756 * 1 2 3 27 27 H 1.08998 * 109.47334 * 60.00084 * 1 2 3 28 28 H 1.08998 * 109.47008 * 60.00186 * 3 2 1 29 29 H 1.09005 * 109.47567 * 300.00318 * 3 2 1 30 30 H 1.09002 * 109.46897 * 300.00117 * 6 4 3 31 31 H 1.09006 * 109.46828 * 59.99969 * 6 4 3 32 32 H 1.09001 * 109.47323 * 179.97438 * 6 4 3 33 33 H 0.96996 * 120.00368 * 335.00300 * 7 4 3 34 34 H 1.08001 * 120.00084 * 359.95159 * 9 8 7 35 35 H 1.08004 * 119.86955 * 180.02562 * 10 9 8 36 36 H 1.08004 * 119.88058 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.01174 * 180.02562 * 12 11 10 38 38 H 0.97003 * 120.00180 * 204.86356 * 14 13 12 39 39 H 0.97001 * 120.00272 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 0.0890 6 6 3.9790 0.3193 1.1806 7 7 3.9756 0.5644 -1.2528 8 6 5.2643 0.8029 -1.7347 9 6 6.1301 1.6265 -1.0294 10 6 7.4050 1.8604 -1.5082 11 6 7.8238 1.2761 -2.6915 12 6 6.9708 0.4548 -3.4018 13 6 5.6849 0.2173 -2.9327 14 7 4.8187 -0.6068 -3.6511 15 6 5.3150 -1.5483 -4.4780 16 8 6.5157 -1.7477 -4.5228 17 6 4.4399 -2.3062 -5.2953 18 1 3.3851 -2.0753 -5.3164 19 6 4.9433 -3.3554 -6.0764 20 7 6.2303 -3.5724 -6.1272 21 14 3.7735 -4.4434 -7.0445 22 1 3.6604 -3.9343 -8.4350 23 1 4.2950 -5.8337 -7.0673 24 1 2.4353 -4.4271 -6.4012 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.6515 0.7808 2.1122 31 1 3.5359 -0.6726 1.0910 32 1 5.0656 0.2329 1.1799 33 1 3.3719 -0.0119 -1.7471 34 1 5.8075 2.0850 -0.1063 35 1 8.0773 2.5014 -0.9573 36 1 8.8217 1.4628 -3.0600 37 1 7.3016 0.0007 -4.3241 38 1 3.8591 -0.5024 -3.5555 39 1 6.5787 -4.2988 -6.6675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281537791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:32 Heat of formation + Delta-G solvation = -50.283229 kcal Electronic energy + Delta-G solvation = -21653.712118 eV Core-core repulsion = 18368.487421 eV Total energy + Delta-G solvation = -3285.224697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51683 -38.31598 -37.02733 -35.42654 -33.44685 -32.41845 -31.14777 -29.13755 -27.65846 -27.40694 -26.19410 -25.67597 -22.65636 -21.51362 -20.26656 -19.60671 -17.84063 -17.02916 -16.46079 -16.13951 -15.80453 -15.42315 -15.26276 -14.64445 -14.02170 -13.88806 -13.71770 -13.44934 -13.18654 -12.64968 -12.54045 -12.50020 -12.16608 -11.90001 -11.75062 -11.36064 -11.27048 -11.06134 -11.04412 -10.82072 -10.62956 -10.40676 -10.30494 -9.84862 -9.58771 -9.24436 -8.79103 -7.66567 -7.33842 -6.33944 -6.32135 -4.83547 2.27010 2.34001 3.07016 3.14623 3.18471 3.57174 3.79917 4.01946 4.38605 4.72335 4.73570 4.81264 5.00308 5.09319 5.19327 5.23397 5.31634 5.51837 5.57344 5.59548 5.71538 5.78193 5.82340 5.98543 6.02955 6.32239 6.39523 6.42876 6.75315 6.94108 7.00195 7.07816 7.27780 7.41861 7.64819 7.81798 7.93530 8.06603 8.19275 8.43014 8.85252 9.37662 10.43766 10.66144 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.005678 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.773985 B = 4930.331250 C = 6752.308717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.052 3.948 4 C 0.160 3.840 5 H 0.087 0.913 6 C -0.165 4.165 7 N -0.745 5.745 8 C 0.157 3.843 9 C -0.183 4.183 10 C -0.128 4.128 11 C -0.153 4.153 12 C -0.103 4.103 13 C 0.130 3.870 14 N -0.697 5.697 15 C 0.547 3.453 16 O -0.565 6.565 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.089 3.911 20 N -0.748 5.748 21 Si 0.910 3.090 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.263 1.263 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.150 0.850 38 H 0.384 0.616 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 9.487 11.235 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.025 4.025 4 C 0.054 3.946 5 H 0.104 0.896 6 C -0.224 4.224 7 N -0.379 5.379 8 C 0.054 3.946 9 C -0.206 4.206 10 C -0.148 4.148 11 C -0.173 4.173 12 C -0.125 4.125 13 C 0.029 3.971 14 N -0.340 5.340 15 C 0.356 3.644 16 O -0.449 6.449 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.375 5.375 21 Si 0.734 3.266 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.187 1.187 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.168 0.832 38 H 0.217 0.783 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.702 9.087 11.201 16.351 hybrid contribution -1.568 -0.506 -0.472 1.714 sum -9.270 8.580 10.730 16.573 Atomic orbital electron populations 1.22744 0.81148 1.02876 0.99752 1.87944 1.19514 1.27387 1.95333 1.22878 0.93673 0.85283 1.00650 1.20813 0.91175 0.97178 0.85452 0.89569 1.22202 1.01984 1.01382 0.96797 1.44303 1.12759 1.55666 1.25149 1.17606 0.86282 0.98716 0.91996 1.20219 0.94702 1.04291 1.01365 1.20605 0.95422 1.01614 0.97167 1.20797 0.99545 1.00410 0.96583 1.21463 0.92473 0.96865 1.01696 1.17616 0.93044 0.95433 0.91033 1.43892 1.07497 1.36183 1.46402 1.16977 0.89042 0.78651 0.79747 1.90599 1.15960 1.68722 1.69641 1.20030 0.95451 1.16511 1.25598 0.91366 1.25739 0.95122 0.96992 0.95496 1.70009 1.12831 1.24914 1.29768 0.86310 0.80999 0.79246 0.79997 1.19626 1.20212 1.18718 0.89560 0.94309 0.94049 0.92347 0.92674 0.92713 0.91503 0.92142 0.76616 0.87134 0.87545 0.87295 0.83250 0.78333 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.57 9.55 -35.23 -0.34 -4.90 16 3 C 0.05 0.54 5.68 37.16 0.21 0.75 16 4 C 0.16 1.93 2.67 -67.93 -0.18 1.75 16 5 H 0.09 0.95 6.49 -51.93 -0.34 0.61 16 6 C -0.16 -2.00 9.23 37.16 0.34 -1.66 16 7 N -0.74 -11.57 5.20 -51.97 -0.27 -11.84 16 8 C 0.16 2.88 6.66 -83.52 -0.56 2.33 16 9 C -0.18 -3.03 8.84 -39.41 -0.35 -3.37 16 10 C -0.13 -2.15 10.04 -39.53 -0.40 -2.55 16 11 C -0.15 -2.92 10.04 -39.56 -0.40 -3.32 16 12 C -0.10 -2.35 8.71 -39.38 -0.34 -2.69 16 13 C 0.13 2.88 6.45 -83.53 -0.54 2.34 16 14 N -0.70 -16.25 5.17 -12.29 -0.06 -16.32 16 15 C 0.55 15.47 7.37 -14.93 -0.11 15.36 16 16 O -0.57 -17.85 12.05 5.10 0.06 -17.79 16 17 C -0.54 -14.94 9.31 -37.54 -0.35 -15.29 16 18 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 19 C 0.09 2.43 5.49 -17.35 -0.10 2.33 16 20 N -0.75 -21.79 11.75 55.56 0.65 -21.14 16 21 Si 0.91 19.60 29.56 -169.99 -5.03 14.57 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.92 7.56 -51.93 -0.39 0.53 16 32 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 33 H 0.40 6.44 6.81 -40.82 -0.28 6.16 16 34 H 0.11 1.53 6.11 -52.49 -0.32 1.21 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.15 3.91 5.78 -52.49 -0.30 3.60 16 38 H 0.38 7.86 7.30 -40.82 -0.30 7.56 16 39 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -33.01 324.98 -6.99 -40.00 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -5.26 Total: 15.17 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.65 Total: -2.65 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.32 Total: -49.29 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.28 Total: -22.69 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.01 -6.99 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281537791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.284 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds