Wall clock time and date at job start Tue Mar 31 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99844 * 2 1 4 4 C 1.53000 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47233 * 185.00216 * 4 3 2 6 6 C 1.53001 * 109.47245 * 304.99999 * 4 3 2 7 7 N 1.46503 * 109.47036 * 64.99985 * 4 3 2 8 8 C 1.39636 * 119.99768 * 154.99927 * 7 4 3 9 9 C 1.38759 * 120.12036 * 0.02562 * 8 7 4 10 10 C 1.38173 * 120.00266 * 179.97438 * 9 8 7 11 11 C 1.38454 * 120.25616 * 0.02562 * 10 9 8 12 12 C 1.38083 * 120.24558 * 359.97392 * 11 10 9 13 13 C 1.38929 * 119.98612 * 0.30598 * 12 11 10 14 14 N 1.39479 * 120.12410 * 179.69618 * 13 12 11 15 15 C 1.34778 * 120.00267 * 24.86834 * 14 13 12 16 16 O 1.21798 * 119.99737 * 5.52001 * 15 14 13 17 17 C 1.41718 * 120.00211 * 185.52102 * 15 14 13 18 18 H 1.07996 * 120.00194 * 5.01967 * 17 15 14 19 19 C 1.40151 * 119.99921 * 185.02153 * 17 15 14 20 20 N 1.30621 * 119.99865 * 354.97551 * 19 17 15 21 21 Si 1.86799 * 119.99726 * 174.97588 * 19 17 15 22 22 H 1.48500 * 109.47042 * 94.99907 * 21 19 17 23 23 H 1.48505 * 109.47080 * 214.99534 * 21 19 17 24 24 H 1.48492 * 109.47429 * 335.00112 * 21 19 17 25 25 H 1.09001 * 109.47135 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46883 * 299.99756 * 1 2 3 27 27 H 1.08998 * 109.47334 * 60.00084 * 1 2 3 28 28 H 1.08998 * 109.47008 * 60.00186 * 3 2 1 29 29 H 1.09005 * 109.47567 * 300.00318 * 3 2 1 30 30 H 1.09002 * 109.46897 * 300.00117 * 6 4 3 31 31 H 1.09006 * 109.46828 * 59.99969 * 6 4 3 32 32 H 1.09001 * 109.47323 * 179.97438 * 6 4 3 33 33 H 0.96996 * 120.00368 * 335.00300 * 7 4 3 34 34 H 1.08001 * 120.00084 * 359.95159 * 9 8 7 35 35 H 1.08004 * 119.86955 * 180.02562 * 10 9 8 36 36 H 1.08004 * 119.88058 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.01174 * 180.02562 * 12 11 10 38 38 H 0.97003 * 120.00180 * 204.86356 * 14 13 12 39 39 H 0.97001 * 120.00272 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 0.0890 6 6 3.9790 0.3193 1.1806 7 7 3.9756 0.5644 -1.2528 8 6 5.2643 0.8029 -1.7347 9 6 6.1301 1.6265 -1.0294 10 6 7.4050 1.8604 -1.5082 11 6 7.8238 1.2761 -2.6915 12 6 6.9708 0.4548 -3.4018 13 6 5.6849 0.2173 -2.9327 14 7 4.8187 -0.6068 -3.6511 15 6 5.3150 -1.5483 -4.4780 16 8 6.5157 -1.7477 -4.5228 17 6 4.4399 -2.3062 -5.2953 18 1 3.3851 -2.0753 -5.3164 19 6 4.9433 -3.3554 -6.0764 20 7 6.2303 -3.5724 -6.1272 21 14 3.7735 -4.4434 -7.0445 22 1 3.6604 -3.9343 -8.4350 23 1 4.2950 -5.8337 -7.0673 24 1 2.4353 -4.4271 -6.4012 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.6515 0.7808 2.1122 31 1 3.5359 -0.6726 1.0910 32 1 5.0656 0.2329 1.1799 33 1 3.3719 -0.0119 -1.7471 34 1 5.8075 2.0850 -0.1063 35 1 8.0773 2.5014 -0.9573 36 1 8.8217 1.4628 -3.0600 37 1 7.3016 0.0007 -4.3241 38 1 3.8591 -0.5024 -3.5555 39 1 6.5787 -4.2988 -6.6675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281537791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:31 Heat of formation + Delta-G solvation = -74.174042 kcal Electronic energy + Delta-G solvation = -21654.748102 eV Core-core repulsion = 18368.487421 eV Total energy + Delta-G solvation = -3286.260680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06168 -39.45315 -38.66611 -36.60583 -35.31880 -34.46684 -32.41058 -30.80088 -29.16468 -28.23653 -28.01098 -26.49263 -24.18617 -23.00825 -21.69660 -21.17922 -19.62267 -18.48028 -17.66912 -17.58315 -17.03234 -16.96061 -16.33871 -16.01819 -15.57916 -15.26047 -15.13156 -14.86637 -14.53754 -14.37012 -14.09125 -13.83045 -13.26730 -13.19660 -12.99106 -12.80024 -12.74099 -12.68613 -12.39641 -12.22006 -12.03042 -11.88288 -11.80977 -11.11300 -10.90744 -10.72852 -10.59605 -9.75724 -8.97398 -8.37424 -7.89178 -6.97898 0.72589 0.84080 1.37418 1.38821 1.55172 2.20062 2.39059 2.49100 2.91058 3.06544 3.16098 3.68853 3.87487 4.10803 4.17939 4.36303 4.41755 4.46937 4.53320 4.57222 4.61484 4.74453 4.81097 4.84941 4.89309 4.97736 5.02823 5.20540 5.23256 5.42856 5.46491 5.58557 5.85758 5.94034 6.09851 6.19285 6.23416 6.35338 6.70367 6.74191 6.86807 7.43197 8.40743 8.58973 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.005678 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.773985 B = 4930.331250 C = 6752.308717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.054 3.946 4 C 0.153 3.847 5 H 0.108 0.892 6 C -0.159 4.159 7 N -0.742 5.742 8 C 0.169 3.831 9 C -0.178 4.178 10 C -0.107 4.107 11 C -0.167 4.167 12 C -0.132 4.132 13 C 0.085 3.915 14 N -0.689 5.689 15 C 0.531 3.469 16 O -0.612 6.612 17 C -0.568 4.568 18 H 0.087 0.913 19 C 0.032 3.968 20 N -0.802 5.802 21 Si 1.001 2.999 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.248 1.248 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.393 0.607 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.395 0.605 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 10.946 13.315 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.023 4.023 4 C 0.049 3.951 5 H 0.125 0.875 6 C -0.218 4.218 7 N -0.374 5.374 8 C 0.065 3.935 9 C -0.201 4.201 10 C -0.127 4.127 11 C -0.187 4.187 12 C -0.154 4.154 13 C -0.015 4.015 14 N -0.333 5.333 15 C 0.340 3.660 16 O -0.499 6.499 17 C -0.603 4.603 18 H 0.105 0.895 19 C -0.186 4.186 20 N -0.430 5.430 21 Si 0.819 3.181 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.171 1.171 25 H 0.105 0.895 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.227 0.773 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.229 0.771 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.768 10.603 13.341 19.642 hybrid contribution -0.927 -0.830 -0.970 1.578 sum -10.696 9.772 12.371 19.051 Atomic orbital electron populations 1.22880 0.79716 1.03414 1.00902 1.87907 1.21206 1.28491 1.95584 1.22916 0.92145 0.85015 1.02195 1.21156 0.92839 0.97654 0.83482 0.87464 1.22142 1.00923 1.00529 0.98204 1.44539 1.11484 1.55246 1.26130 1.17701 0.87655 0.97630 0.90538 1.20679 0.94138 1.03107 1.02160 1.21070 0.96001 1.00042 0.95554 1.20961 0.99753 1.00391 0.97620 1.21222 0.94126 0.98877 1.01150 1.17841 0.93073 0.97456 0.93176 1.43398 1.08192 1.35680 1.46071 1.17366 0.88681 0.79483 0.80506 1.90567 1.17716 1.70375 1.71268 1.20549 0.96325 1.17274 1.26193 0.89524 1.27021 0.97051 0.98286 0.96207 1.70168 1.15643 1.26054 1.31139 0.84966 0.78369 0.76553 0.78184 1.18441 1.19483 1.17126 0.89477 0.92417 0.93573 0.89363 0.92450 0.89755 0.93732 0.93396 0.77304 0.83185 0.83221 0.85904 0.88104 0.77051 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.02 9.55 -148.98 -1.42 -10.45 16 3 C 0.05 0.94 5.68 71.98 0.41 1.35 16 4 C 0.15 3.21 2.67 44.99 0.12 3.33 16 5 H 0.11 1.83 6.49 -2.38 -0.02 1.82 16 6 C -0.16 -3.41 9.23 71.98 0.66 -2.74 16 7 N -0.74 -22.04 5.20 -318.33 -1.66 -23.69 16 8 C 0.17 6.07 6.66 38.41 0.26 6.33 16 9 C -0.18 -5.33 8.84 22.38 0.20 -5.13 16 10 C -0.11 -3.29 10.04 22.31 0.22 -3.06 16 11 C -0.17 -6.41 10.04 22.28 0.22 -6.18 16 12 C -0.13 -6.39 8.71 22.40 0.20 -6.19 16 13 C 0.08 3.89 6.45 38.47 0.25 4.13 16 14 N -0.69 -33.90 5.17 -310.96 -1.61 -35.51 16 15 C 0.53 31.88 7.37 85.10 0.63 32.51 16 16 O -0.61 -41.62 12.05 -4.66 -0.06 -41.68 16 17 C -0.57 -32.60 9.31 23.59 0.22 -32.38 16 18 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 19 C 0.03 1.80 5.49 85.34 0.47 2.27 16 20 N -0.80 -48.97 11.75 21.85 0.26 -48.71 16 21 Si 1.00 40.66 29.56 68.60 2.03 42.69 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.15 7.56 -2.38 -0.02 1.14 16 32 H 0.05 1.14 7.71 -2.39 -0.02 1.12 16 33 H 0.39 12.56 6.81 -92.71 -0.63 11.93 16 34 H 0.15 3.33 6.11 -2.91 -0.02 3.32 16 35 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 37 H 0.10 5.84 5.78 -2.91 -0.02 5.83 16 38 H 0.40 16.86 7.30 -92.71 -0.68 16.18 16 39 H 0.28 15.29 8.29 -92.71 -0.77 14.52 16 Total: -1.00 -78.14 324.98 2.42 -75.72 By element: Atomic # 1 Polarization: 45.96 SS G_CDS: -0.23 Total: 45.73 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.10 Total: -4.11 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -3.00 Total: -107.92 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.48 Total: -52.13 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -78.14 2.42 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281537791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.548 kcal (2) G-P(sol) polarization free energy of solvation -78.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds