Wall clock time and date at job start Tue Mar 31 2020 00:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46949 * 118.01865 * 3 2 1 5 5 C 1.36125 * 120.00107 * 262.54260 * 4 3 2 6 6 H 1.08001 * 119.99862 * 182.14357 * 5 4 3 7 7 C 1.39585 * 119.99955 * 2.14561 * 5 4 3 8 8 N 1.31012 * 120.00235 * 224.13081 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 44.12660 * 7 5 4 10 10 H 1.48496 * 109.47158 * 270.00269 * 9 7 5 11 11 H 1.48498 * 109.47124 * 149.99827 * 9 7 5 12 12 H 1.48505 * 109.46845 * 30.00298 * 9 7 5 13 13 C 1.34780 * 119.99936 * 82.54314 * 4 3 2 14 14 O 1.21504 * 119.99551 * 175.15934 * 13 4 3 15 15 C 1.48824 * 120.00072 * 355.16408 * 13 4 3 16 16 O 1.21439 * 119.99988 * 6.86756 * 15 13 4 17 17 N 1.34779 * 120.00117 * 186.87105 * 15 13 4 18 18 C 1.46923 * 120.62852 * 7.09620 * 17 15 13 19 19 C 1.52764 * 109.00636 * 233.58312 * 18 17 15 20 20 C 1.53040 * 109.38385 * 305.58756 * 19 18 17 21 21 C 1.53037 * 109.53636 * 61.23673 * 20 19 18 22 22 H 1.09007 * 109.49786 * 58.59230 * 21 20 19 23 23 C 1.53000 * 109.49651 * 178.68404 * 21 20 19 24 24 C 1.46927 * 120.63010 * 187.37059 * 17 15 13 25 25 H 4.40639 * 5.51441 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47252 * 358.02155 * 3 2 1 27 27 H 1.08998 * 109.47509 * 238.01715 * 3 2 1 28 28 H 0.97003 * 119.99839 * 354.96337 * 8 7 5 29 29 H 1.09003 * 109.58659 * 353.41794 * 18 17 15 30 30 H 1.09000 * 109.58811 * 113.84443 * 18 17 15 31 31 H 1.08998 * 109.56157 * 185.55335 * 19 18 17 32 32 H 1.08997 * 109.36220 * 65.49626 * 19 18 17 33 33 H 1.09005 * 109.45677 * 301.22180 * 20 19 18 34 34 H 1.08992 * 109.46409 * 181.26271 * 20 19 18 35 35 H 1.09009 * 109.47209 * 179.84234 * 23 21 20 36 36 H 1.09003 * 109.47290 * 299.83661 * 23 21 20 37 37 H 1.08997 * 109.47217 * 59.84049 * 23 21 20 38 38 H 1.08994 * 109.58787 * 246.15662 * 24 17 15 39 39 H 1.08997 * 109.58596 * 6.44234 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6497 -1.2193 5 6 3.5054 -0.1045 -2.2899 6 1 3.8977 0.3721 -3.1761 7 6 3.3793 -1.4938 -2.2423 8 7 4.3504 -2.2553 -2.6821 9 14 1.8256 -2.2674 -1.5515 10 1 1.9862 -2.4806 -0.0907 11 1 1.5834 -3.5719 -2.2184 12 1 0.6722 -1.3647 -1.7962 13 6 3.2152 1.9937 -1.2811 14 8 3.7016 2.5286 -2.2576 15 6 2.7091 2.8223 -0.1533 16 8 2.3385 2.2895 0.8731 17 7 2.6621 4.1642 -0.2710 18 6 2.9585 4.8137 -1.5551 19 6 4.0448 5.8663 -1.3411 20 6 3.6079 6.8295 -0.2351 21 6 3.4182 6.0561 1.0717 22 1 4.3518 5.5620 1.3409 23 6 3.0133 7.0250 2.1844 24 6 2.3193 5.0054 0.8838 25 1 -1.0501 0.0001 0.0003 26 1 3.0098 -1.0262 0.0355 27 1 3.0091 0.5451 0.8716 28 1 5.1254 -1.8558 -3.1074 29 1 3.3092 4.0686 -2.2692 30 1 2.0582 5.2944 -1.9378 31 1 4.2022 6.4214 -2.2658 32 1 4.9725 5.3740 -1.0493 33 1 2.6673 7.3031 -0.5166 34 1 4.3721 7.5943 -0.0968 35 1 2.8755 6.4732 3.1144 36 1 3.7955 7.7724 2.3179 37 1 2.0805 7.5197 1.9139 38 1 1.3659 5.5020 0.7040 39 1 2.2460 4.3863 1.7779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281905791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:47 Heat of formation + Delta-G solvation = 7.568663 kcal Electronic energy + Delta-G solvation = -22595.821297 eV Core-core repulsion = 19313.105246 eV Total energy + Delta-G solvation = -3282.716051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91371 -39.92792 -38.59088 -37.51535 -34.91121 -34.53351 -33.46477 -32.79941 -28.59002 -28.41255 -27.50383 -26.39490 -23.61308 -23.19640 -21.24322 -20.49301 -20.26559 -19.15240 -18.06338 -17.85185 -17.32094 -16.79223 -16.25879 -15.95717 -15.90870 -15.59275 -15.19876 -15.03291 -14.65054 -14.37586 -14.23274 -14.03145 -13.79427 -13.52232 -13.05572 -12.79768 -12.67415 -12.53979 -12.23872 -12.02535 -11.85368 -11.72039 -11.51357 -11.34672 -11.18729 -11.08060 -10.57467 -10.33203 -9.70134 -9.61296 -9.33279 -6.10349 0.50905 1.29232 1.41805 1.54418 1.59621 1.84692 1.97906 2.12668 2.28268 2.70529 2.98798 3.43390 3.59481 3.78499 3.85262 3.97222 4.12809 4.22063 4.32561 4.43595 4.54656 4.64599 4.66706 4.80536 4.87142 4.89901 5.02089 5.06826 5.10089 5.18369 5.30684 5.31710 5.43537 5.47175 5.58522 5.58979 6.08126 6.19974 6.65714 6.74314 6.88382 7.09421 7.66883 8.00096 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028321 B = 0.005626 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.432990 B = 4975.462385 C = 5607.510920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.227 4.227 3 C 0.176 3.824 4 N -0.387 5.387 5 C -0.451 4.451 6 H 0.073 0.927 7 C 0.011 3.989 8 N -0.820 5.820 9 Si 1.067 2.933 10 H -0.253 1.253 11 H -0.280 1.280 12 H -0.249 1.249 13 C 0.379 3.621 14 O -0.594 6.594 15 C 0.514 3.486 16 O -0.550 6.550 17 N -0.583 5.583 18 C 0.043 3.957 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.103 4.103 22 H 0.055 0.945 23 C -0.136 4.136 24 C 0.111 3.889 25 H 0.259 0.741 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.279 0.721 29 H 0.134 0.866 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 13.820 8.311 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.228 4.228 3 C 0.054 3.946 4 N -0.102 5.102 5 C -0.577 4.577 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.448 5.448 9 Si 0.887 3.113 10 H -0.179 1.179 11 H -0.207 1.207 12 H -0.173 1.173 13 C 0.169 3.831 14 O -0.485 6.485 15 C 0.299 3.701 16 O -0.430 6.430 17 N -0.315 5.315 18 C -0.078 4.078 19 C -0.162 4.162 20 C -0.146 4.146 21 C -0.123 4.123 22 H 0.074 0.926 23 C -0.194 4.194 24 C -0.010 4.010 25 H 0.275 0.725 26 H 0.115 0.885 27 H 0.147 0.853 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.518 12.349 8.742 16.475 hybrid contribution 1.125 1.183 -0.938 1.883 sum -5.394 13.532 7.804 16.526 Atomic orbital electron populations 1.25660 0.96515 0.99032 0.97778 1.23233 0.95044 1.01968 1.02602 1.19271 0.85731 1.00260 0.89300 1.43641 1.49735 1.04570 1.12259 1.20250 1.48401 0.91018 0.98068 0.90923 1.27611 1.02516 0.92642 0.97465 1.70787 1.05086 1.40190 1.28780 0.84150 0.73666 0.76031 0.77459 1.17888 1.20707 1.17276 1.19663 0.90866 0.82942 0.89639 1.90097 1.52940 1.68694 1.36799 1.19900 0.79017 0.83812 0.87322 1.90576 1.49243 1.71641 1.31582 1.47921 1.66606 1.03912 1.13093 1.23138 0.99213 0.99305 0.86166 1.21729 0.97397 0.96592 1.00498 1.21605 1.02615 0.97241 0.93096 1.21487 0.97651 0.95972 0.97157 0.92629 1.21711 1.02439 0.98436 0.96779 1.21914 0.98663 0.92242 0.88195 0.72529 0.88484 0.85316 0.90934 0.84991 0.91342 0.89278 0.93796 0.90517 0.90039 0.92426 0.91064 0.91293 0.89967 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.02 17.64 74.32 1.31 -4.71 16 2 C -0.23 -9.59 8.40 31.13 0.26 -9.32 16 3 C 0.18 8.07 4.71 84.57 0.40 8.47 16 4 N -0.39 -20.43 2.56 -647.76 -1.66 -22.09 16 5 C -0.45 -25.96 9.56 84.35 0.81 -25.15 16 6 H 0.07 4.69 7.37 -2.91 -0.02 4.67 16 7 C 0.01 0.61 4.92 85.14 0.42 1.03 16 8 N -0.82 -45.44 13.67 21.76 0.30 -45.14 16 9 Si 1.07 46.87 23.41 68.60 1.61 48.47 16 10 H -0.25 -10.19 6.23 99.48 0.62 -9.57 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.25 -10.53 5.30 99.48 0.53 -10.00 16 13 C 0.38 19.50 7.48 87.08 0.65 20.15 16 14 O -0.59 -32.53 12.67 -3.73 -0.05 -32.57 16 15 C 0.51 22.58 7.52 87.08 0.66 23.23 16 16 O -0.55 -24.29 11.67 -3.52 -0.04 -24.33 16 17 N -0.58 -20.92 2.98 -822.03 -2.45 -23.37 16 18 C 0.04 1.43 6.23 86.22 0.54 1.96 16 19 C -0.12 -3.28 6.06 30.53 0.19 -3.09 16 20 C -0.11 -2.16 5.17 30.62 0.16 -2.00 16 21 C -0.10 -2.27 2.87 -10.72 -0.03 -2.30 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 C -0.14 -2.10 9.20 71.98 0.66 -1.44 16 24 C 0.11 3.05 5.70 86.36 0.49 3.55 16 25 H 0.26 6.08 7.80 -4.41 -0.03 6.04 16 26 H 0.10 4.43 4.34 -2.39 -0.01 4.42 16 27 H 0.13 5.73 5.69 -2.39 -0.01 5.72 16 28 H 0.28 15.56 8.73 -92.71 -0.81 14.75 16 29 H 0.13 5.63 3.78 -79.51 -0.30 5.33 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.33 7.06 -2.39 -0.02 2.31 16 Total: -1.00 -67.02 307.25 4.67 -62.36 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.45 Total: 26.31 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.51 Total: 10.36 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -3.81 Total: -90.60 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -0.09 Total: -56.90 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.61 Total: 48.47 kcal Total: -67.02 4.67 -62.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281905791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.926 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds