Wall clock time and date at job start Tue Mar 31 2020 00:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46810 * 2 1 4 4 O 1.42905 * 109.46679 * 119.99665 * 2 1 3 5 5 C 1.35425 * 116.99548 * 150.00310 * 4 2 1 6 6 N 1.32235 * 119.80354 * 359.97438 * 5 4 2 7 7 C 1.31882 * 121.80223 * 179.97438 * 6 5 4 8 8 C 1.38345 * 121.18596 * 0.02562 * 7 6 5 9 9 C 1.38335 * 119.46162 * 359.97438 * 8 7 6 10 10 C 1.39996 * 118.34477 * 359.74748 * 9 8 7 11 11 C 1.47524 * 120.59346 * 180.26610 * 10 9 8 12 12 O 1.21587 * 120.00123 * 131.37311 * 11 10 9 13 13 N 1.34779 * 120.00194 * 311.36334 * 11 10 9 14 14 C 1.46496 * 119.99851 * 4.44709 * 13 11 10 15 15 C 1.46495 * 120.00226 * 184.44113 * 13 11 10 16 16 C 1.50704 * 109.47025 * 90.00230 * 15 13 11 17 17 H 1.08000 * 119.99791 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99985 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47516 * 59.99720 * 20 18 16 22 22 H 1.48506 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47299 * 299.99510 * 20 18 16 24 24 H 1.09004 * 109.47693 * 300.00287 * 1 2 3 25 25 H 1.09000 * 109.47288 * 60.00124 * 1 2 3 26 26 H 1.09009 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47364 * 239.99644 * 2 1 3 28 28 H 1.09000 * 109.47330 * 60.00184 * 3 2 1 29 29 H 1.09007 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47300 * 299.99428 * 3 2 1 31 31 H 1.08003 * 119.40624 * 180.02562 * 7 6 5 32 32 H 1.08007 * 120.26975 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.82717 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47571 * 92.98165 * 14 13 11 35 35 H 1.09002 * 109.47093 * 212.98416 * 14 13 11 36 36 H 1.09004 * 109.47022 * 332.97758 * 14 13 11 37 37 H 1.08994 * 109.47363 * 210.00528 * 15 13 11 38 38 H 1.09006 * 109.47077 * 330.00850 * 15 13 11 39 39 H 0.96993 * 119.99529 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.1964 -1.3117 1.0656 6 7 3.8583 -1.2903 -0.0789 7 6 5.0203 -1.8976 -0.2213 8 6 5.6007 -2.5886 0.8274 9 6 4.9518 -2.6436 2.0478 10 6 3.7224 -1.9865 2.1772 11 6 2.9906 -2.0082 3.4580 12 8 2.5585 -0.9738 3.9288 13 7 2.8009 -3.1746 4.1061 14 6 3.4041 -4.4058 3.5901 15 6 1.9917 -3.2111 5.3267 16 6 0.5509 -3.4671 4.9667 17 1 0.2665 -3.5907 3.9322 18 6 -0.4043 -3.5436 5.9581 19 7 -0.0580 -3.3936 7.2180 20 14 -2.1901 -3.8616 5.5119 21 1 -2.2999 -5.1639 4.8067 22 1 -3.0105 -3.8985 6.7492 23 1 -2.6797 -2.7757 4.6251 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 5.5279 -1.8549 -1.1737 32 1 6.5527 -3.0810 0.6943 33 1 5.3850 -3.1764 2.8814 34 1 4.3725 -4.5629 4.0650 35 1 2.7506 -5.2502 3.8094 36 1 3.5378 -4.3206 2.5116 37 1 2.3509 -4.0086 5.9771 38 1 2.0724 -2.2555 5.8449 39 1 -0.7299 -3.4478 7.9153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284130605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:41 Heat of formation + Delta-G solvation = -32.830374 kcal Electronic energy + Delta-G solvation = -22108.499913 eV Core-core repulsion = 18824.032029 eV Total energy + Delta-G solvation = -3284.467884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78304 -38.64400 -37.96769 -34.79549 -33.16849 -32.95601 -32.13475 -30.22183 -27.74387 -27.19239 -26.00801 -24.35418 -23.72755 -22.36480 -21.07346 -19.20848 -18.23854 -16.81600 -16.62186 -16.45095 -15.65590 -15.25123 -15.14973 -14.45685 -14.29211 -14.11320 -13.86857 -13.42344 -13.09721 -12.95239 -12.34458 -12.24542 -12.20335 -12.15847 -12.02504 -11.89248 -11.72676 -11.18805 -10.90204 -10.86340 -10.69310 -10.56406 -10.13274 -9.83902 -9.74259 -9.58981 -8.90175 -8.41345 -8.36113 -7.61819 -6.01338 -4.05749 0.95131 1.29447 3.10929 3.33965 3.37232 3.38260 3.43815 3.76095 4.06213 4.29755 4.47821 4.79728 4.93156 4.99797 5.04923 5.06044 5.15769 5.28493 5.32893 5.53199 5.59511 5.67760 5.78731 5.83172 5.85682 5.89555 5.93545 6.08113 6.21701 6.22458 6.25723 6.43060 7.06529 7.42179 7.47045 7.56006 7.83009 7.95438 8.26325 8.41029 8.92456 9.10359 9.58976 11.06801 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.006076 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.516666 B = 4607.401836 C = 5777.761623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.079 3.921 3 C -0.166 4.166 4 O -0.274 6.274 5 C 0.365 3.635 6 N -0.546 5.546 7 C 0.149 3.851 8 C -0.223 4.223 9 C -0.015 4.015 10 C -0.189 4.189 11 C 0.558 3.442 12 O -0.522 6.522 13 N -0.596 5.596 14 C 0.080 3.920 15 C 0.246 3.754 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 1.392 -15.931 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 C -0.224 4.224 4 O -0.179 6.179 5 C 0.186 3.814 6 N -0.270 5.270 7 C -0.008 4.008 8 C -0.243 4.243 9 C -0.041 4.041 10 C -0.195 4.195 11 C 0.343 3.657 12 O -0.398 6.398 13 N -0.328 5.328 14 C -0.065 4.065 15 C 0.127 3.873 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.213 2.430 -15.916 18.550 hybrid contribution -0.541 -0.719 0.257 0.936 sum 8.672 1.710 -15.659 17.982 Atomic orbital electron populations 1.21905 0.92804 1.03262 1.02944 1.22380 0.94769 0.92786 0.87746 1.22199 1.01849 0.95757 1.02578 1.86520 1.30620 1.63004 1.37781 1.19734 0.85780 0.87628 0.88266 1.67333 1.10930 1.24542 1.24198 1.22501 0.89365 0.90211 0.98676 1.21848 1.02859 1.05441 0.94196 1.21718 0.91682 0.92819 0.97905 1.20264 0.98549 1.04994 0.95701 1.17681 0.80215 0.84511 0.83309 1.90772 1.50100 1.32178 1.66765 1.48059 1.50540 1.05959 1.28257 1.21802 0.97696 0.88699 0.98258 1.19315 0.89048 0.98772 0.80133 1.21403 0.92450 1.49218 0.93410 0.92496 1.24920 0.99079 0.95201 0.94824 1.69924 1.34264 1.49934 0.99312 0.86567 0.84439 0.78747 0.77728 1.20276 1.21149 1.20140 0.91194 0.90722 0.91732 0.89530 0.91639 0.92206 0.91331 0.82374 0.84273 0.83649 0.93584 0.90789 0.92301 0.94819 0.93587 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.56 37.16 0.36 -1.65 16 2 C 0.08 1.17 3.11 -26.73 -0.08 1.08 16 3 C -0.17 -2.15 9.53 37.16 0.35 -1.79 16 4 O -0.27 -5.29 8.82 -26.89 -0.24 -5.53 16 5 C 0.37 6.52 7.45 -16.61 -0.12 6.40 16 6 N -0.55 -7.99 8.64 -12.99 -0.11 -8.10 16 7 C 0.15 1.66 11.17 -17.49 -0.20 1.46 16 8 C -0.22 -2.32 10.09 -39.51 -0.40 -2.72 16 9 C -0.02 -0.21 7.73 -38.89 -0.30 -0.51 16 10 C -0.19 -3.42 4.93 -104.69 -0.52 -3.94 16 11 C 0.56 12.74 6.98 -12.47 -0.09 12.65 16 12 O -0.52 -14.22 16.10 -3.63 -0.06 -14.28 16 13 N -0.60 -13.31 2.86 -184.20 -0.53 -13.83 16 14 C 0.08 1.32 9.10 59.84 0.54 1.86 16 15 C 0.25 6.62 5.21 -5.19 -0.03 6.59 16 16 C -0.53 -15.31 9.39 -34.44 -0.32 -15.63 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 20 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 27 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.15 1.66 6.61 -52.49 -0.35 1.31 16 34 H 0.05 0.62 7.57 -51.93 -0.39 0.23 16 35 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 36 H 0.06 0.86 5.66 -51.93 -0.29 0.57 16 37 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -35.41 331.70 -6.66 -42.08 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.55 Total: -1.86 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.90 Total: 5.51 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.10 Total: -48.15 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.30 Total: -19.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.41 -6.66 -42.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284130605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.245 kcal (2) G-P(sol) polarization free energy of solvation -35.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds