Wall clock time and date at job start Tue Mar 31 2020 00:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46810 * 2 1 4 4 O 1.42905 * 109.46679 * 119.99665 * 2 1 3 5 5 C 1.35425 * 116.99548 * 150.00310 * 4 2 1 6 6 N 1.32235 * 119.80354 * 359.97438 * 5 4 2 7 7 C 1.31882 * 121.80223 * 179.97438 * 6 5 4 8 8 C 1.38345 * 121.18596 * 0.02562 * 7 6 5 9 9 C 1.38335 * 119.46162 * 359.97438 * 8 7 6 10 10 C 1.39996 * 118.34477 * 359.74748 * 9 8 7 11 11 C 1.47524 * 120.59346 * 180.26610 * 10 9 8 12 12 O 1.21587 * 120.00123 * 131.37311 * 11 10 9 13 13 N 1.34779 * 120.00194 * 311.36334 * 11 10 9 14 14 C 1.46496 * 119.99851 * 4.44709 * 13 11 10 15 15 C 1.46495 * 120.00226 * 184.44113 * 13 11 10 16 16 C 1.50704 * 109.47025 * 90.00230 * 15 13 11 17 17 H 1.08000 * 119.99791 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99985 * 180.02562 * 16 15 13 19 19 N 1.31520 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47516 * 59.99720 * 20 18 16 22 22 H 1.48506 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47299 * 299.99510 * 20 18 16 24 24 H 1.09004 * 109.47693 * 300.00287 * 1 2 3 25 25 H 1.09000 * 109.47288 * 60.00124 * 1 2 3 26 26 H 1.09009 * 109.47138 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47364 * 239.99644 * 2 1 3 28 28 H 1.09000 * 109.47330 * 60.00184 * 3 2 1 29 29 H 1.09007 * 109.46716 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47300 * 299.99428 * 3 2 1 31 31 H 1.08003 * 119.40624 * 180.02562 * 7 6 5 32 32 H 1.08007 * 120.26975 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.82717 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.47571 * 92.98165 * 14 13 11 35 35 H 1.09002 * 109.47093 * 212.98416 * 14 13 11 36 36 H 1.09004 * 109.47022 * 332.97758 * 14 13 11 37 37 H 1.08994 * 109.47363 * 210.00528 * 15 13 11 38 38 H 1.09006 * 109.47077 * 330.00850 * 15 13 11 39 39 H 0.96993 * 119.99529 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.1964 -1.3117 1.0656 6 7 3.8583 -1.2903 -0.0789 7 6 5.0203 -1.8976 -0.2213 8 6 5.6007 -2.5886 0.8274 9 6 4.9518 -2.6436 2.0478 10 6 3.7224 -1.9865 2.1772 11 6 2.9906 -2.0082 3.4580 12 8 2.5585 -0.9738 3.9288 13 7 2.8009 -3.1746 4.1061 14 6 3.4041 -4.4058 3.5901 15 6 1.9917 -3.2111 5.3267 16 6 0.5509 -3.4671 4.9667 17 1 0.2665 -3.5907 3.9322 18 6 -0.4043 -3.5436 5.9581 19 7 -0.0580 -3.3936 7.2180 20 14 -2.1901 -3.8616 5.5119 21 1 -2.2999 -5.1639 4.8067 22 1 -3.0105 -3.8985 6.7492 23 1 -2.6797 -2.7757 4.6251 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 5.5279 -1.8549 -1.1737 32 1 6.5527 -3.0810 0.6943 33 1 5.3850 -3.1764 2.8814 34 1 4.3725 -4.5629 4.0650 35 1 2.7506 -5.2502 3.8094 36 1 3.5378 -4.3206 2.5116 37 1 2.3509 -4.0086 5.9771 38 1 2.0724 -2.2555 5.8449 39 1 -0.7299 -3.4478 7.9153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284130605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:40 Heat of formation + Delta-G solvation = -58.409935 kcal Electronic energy + Delta-G solvation = -22109.609126 eV Core-core repulsion = 18824.032029 eV Total energy + Delta-G solvation = -3285.577097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.98289 -40.24123 -39.17610 -36.64531 -34.88706 -34.27211 -33.55515 -31.37953 -29.69273 -28.24106 -27.55668 -25.92208 -24.94451 -23.99360 -22.18158 -20.77334 -19.41158 -18.72194 -18.15474 -17.96388 -17.17830 -16.70702 -16.33235 -16.15614 -15.84616 -15.38296 -15.09036 -14.72302 -14.37074 -14.24716 -14.10403 -13.68807 -13.45836 -13.38755 -13.28717 -13.23059 -13.10609 -12.91342 -12.83182 -12.59012 -12.22724 -11.95089 -11.79066 -11.77475 -11.11423 -10.84628 -10.66060 -10.44122 -9.56906 -9.40601 -8.25011 -6.39875 -0.14894 0.26719 1.32987 1.37936 1.45260 1.77877 2.03760 2.28290 2.40174 2.78090 3.04080 3.25322 3.68477 3.81742 3.92218 3.98233 4.01380 4.20659 4.24780 4.32996 4.54018 4.62244 4.63204 4.76167 4.77899 4.82557 4.87839 4.93877 4.98905 5.12451 5.15851 5.19432 5.20580 5.50882 5.53110 5.79966 6.03205 6.31061 6.63114 6.69278 6.80463 7.23457 7.40172 8.82085 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.006076 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.516666 B = 4607.401836 C = 5777.761623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 C -0.158 4.158 4 O -0.318 6.318 5 C 0.343 3.657 6 N -0.551 5.551 7 C 0.157 3.843 8 C -0.198 4.198 9 C -0.011 4.011 10 C -0.227 4.227 11 C 0.552 3.448 12 O -0.587 6.587 13 N -0.603 5.603 14 C 0.076 3.924 15 C 0.261 3.739 16 C -0.546 4.546 17 H 0.047 0.953 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.280 1.280 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.208 0.792 32 H 0.191 0.809 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.032 0.968 38 H -0.001 1.001 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.808 -0.040 -19.016 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.216 4.216 4 O -0.225 6.225 5 C 0.165 3.835 6 N -0.275 5.275 7 C 0.000 4.000 8 C -0.217 4.217 9 C -0.036 4.036 10 C -0.233 4.233 11 C 0.340 3.660 12 O -0.468 6.468 13 N -0.334 5.334 14 C -0.066 4.066 15 C 0.140 3.860 16 C -0.585 4.585 17 H 0.065 0.935 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.206 1.206 24 H 0.067 0.933 25 H 0.130 0.870 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.225 0.775 32 H 0.208 0.792 33 H 0.182 0.818 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.017 0.983 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.920 0.951 -19.028 21.960 hybrid contribution -0.903 -0.287 1.127 1.473 sum 10.017 0.664 -17.901 20.524 Atomic orbital electron populations 1.21947 0.92256 1.02720 1.03714 1.22666 0.95312 0.93422 0.87000 1.22148 1.01268 0.94904 1.03234 1.86473 1.31988 1.63899 1.40146 1.19877 0.86003 0.88309 0.89324 1.67434 1.12289 1.25276 1.22526 1.23489 0.87830 0.87871 1.00813 1.22377 1.03763 1.03546 0.92029 1.22021 0.89747 0.91830 1.00016 1.19998 1.00756 1.09118 0.93406 1.18481 0.79541 0.83440 0.84508 1.90708 1.53071 1.34368 1.68687 1.48061 1.50093 1.08140 1.27069 1.22095 0.98763 0.85736 0.99963 1.18793 0.89343 0.95893 0.82016 1.21630 0.93920 1.49820 0.93082 0.93475 1.25831 1.03798 0.94597 0.94655 1.70036 1.35942 1.50258 1.00288 0.85503 0.78611 0.79045 0.77882 1.18357 1.19786 1.20604 0.93291 0.86958 0.92903 0.88471 0.93534 0.92956 0.87978 0.77544 0.79156 0.81766 0.89847 0.91442 0.89905 0.95049 0.98314 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.56 71.98 0.69 -3.34 16 2 C 0.07 2.13 3.11 30.59 0.10 2.22 16 3 C -0.16 -4.08 9.53 71.98 0.69 -3.39 16 4 O -0.32 -12.94 8.82 -78.67 -0.69 -13.64 16 5 C 0.34 12.32 7.45 85.13 0.63 12.96 16 6 N -0.55 -14.93 8.64 -308.01 -2.66 -17.59 16 7 C 0.16 2.71 11.17 84.71 0.95 3.66 16 8 C -0.20 -3.03 10.09 22.32 0.23 -2.81 16 9 C -0.01 -0.25 7.73 22.72 0.18 -0.07 16 10 C -0.23 -8.24 4.93 -19.91 -0.10 -8.34 16 11 C 0.55 26.59 6.98 86.69 0.60 27.19 16 12 O -0.59 -34.75 16.10 4.54 0.07 -34.68 16 13 N -0.60 -27.97 2.86 -854.95 -2.44 -30.41 16 14 C 0.08 2.46 9.10 127.77 1.16 3.62 16 15 C 0.26 14.86 5.21 85.64 0.45 15.30 16 16 C -0.55 -33.20 9.39 25.60 0.24 -32.96 16 17 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.01 0.62 5.46 84.65 0.46 1.09 16 19 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 20 Si 0.97 46.50 29.54 68.60 2.03 48.53 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.10 2.61 6.98 -2.39 -0.02 2.59 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.16 3.16 6.61 -2.91 -0.02 3.14 16 34 H 0.08 2.05 7.57 -2.39 -0.02 2.04 16 35 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 36 H 0.08 2.27 5.66 -2.39 -0.01 2.25 16 37 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 38 H 0.00 -0.08 7.36 -2.38 -0.02 -0.10 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -85.67 331.70 3.90 -81.77 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.04 Total: 8.05 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.27 Total: 15.13 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -4.82 Total: -105.16 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.62 Total: -48.32 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -85.67 3.90 -81.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284130605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.358 kcal (2) G-P(sol) polarization free energy of solvation -85.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds