Wall clock time and date at job start Tue Mar 31 2020 00:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 N 1.46907 * 109.46840 * 119.99939 * 2 1 3 5 5 C 1.46892 * 110.99724 * 276.31570 * 4 2 1 6 6 H 1.09004 * 109.47384 * 348.27570 * 5 4 2 7 7 C 1.53007 * 109.46875 * 108.27633 * 5 4 2 8 8 C 1.53000 * 109.47074 * 228.27457 * 5 4 2 9 9 C 1.50694 * 109.47378 * 65.00308 * 8 5 4 10 10 H 1.08001 * 119.99853 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00393 * 179.97438 * 9 8 5 12 12 N 1.31512 * 119.99954 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00203 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46939 * 59.99856 * 13 11 9 15 15 H 1.48502 * 109.46913 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46865 * 300.00320 * 13 11 9 17 17 C 1.50704 * 109.47347 * 239.99657 * 2 1 3 18 18 C 1.38252 * 120.00123 * 280.00508 * 17 2 1 19 19 C 1.38209 * 119.99679 * 180.02562 * 18 17 2 20 20 C 1.38256 * 120.00327 * 359.95099 * 19 18 17 21 21 C 1.38207 * 120.00204 * 0.02562 * 20 19 18 22 22 N 1.48012 * 120.00406 * 180.02562 * 21 20 19 23 23 O 1.21802 * 119.99941 * 0.02562 * 22 21 20 24 24 O 1.21799 * 120.00113 * 179.97438 * 22 21 20 25 25 C 1.38214 * 119.99681 * 99.72892 * 17 2 1 26 26 H 1.08997 * 109.47449 * 303.47195 * 1 2 3 27 27 H 1.09009 * 109.47025 * 63.47093 * 1 2 3 28 28 H 1.08999 * 109.47282 * 183.46256 * 1 2 3 29 29 H 1.00900 * 110.99213 * 152.36420 * 4 2 1 30 30 H 1.09001 * 109.46967 * 65.37157 * 7 5 4 31 31 H 1.08998 * 109.47046 * 305.37016 * 7 5 4 32 32 H 1.08999 * 109.46684 * 185.37153 * 7 5 4 33 33 H 1.08999 * 109.47036 * 185.00491 * 8 5 4 34 34 H 1.09000 * 109.47224 * 305.00156 * 8 5 4 35 35 H 0.97004 * 120.00234 * 180.02562 * 12 11 9 36 36 H 1.07996 * 120.00377 * 359.97438 * 18 17 2 37 37 H 1.08010 * 119.99932 * 179.97438 * 19 18 17 38 38 H 1.08008 * 119.99764 * 180.02562 * 20 19 18 39 39 H 1.08003 * 120.00289 * 359.97438 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0528 0.2147 2.3543 6 1 1.9062 1.2402 2.0152 7 6 0.9382 -0.1634 3.3321 8 6 3.4076 0.0982 3.0556 9 6 4.4944 0.5871 2.1333 10 1 4.2439 0.9448 1.1455 11 6 5.8085 0.5779 2.5504 12 7 6.1137 0.1419 3.7530 13 14 7.1558 1.1834 1.4067 14 1 6.9022 2.6027 1.0510 15 1 8.4707 1.0704 2.0875 16 1 7.1653 0.3578 0.1724 17 6 2.0324 -0.7105 -1.2304 18 6 2.0667 -2.0921 -1.2653 19 6 2.5280 -2.7436 -2.3936 20 6 2.9541 -2.0137 -3.4877 21 6 2.9194 -0.6325 -3.4531 22 7 3.3750 0.1489 -4.6246 23 8 3.7802 -0.4253 -5.6194 24 8 3.3439 1.3661 -4.5942 25 6 2.4535 0.0192 -2.3262 26 1 -0.3634 0.5668 0.8572 27 1 -0.3633 0.4590 -0.9195 28 1 -0.3634 -1.0258 0.0621 29 1 2.9269 -1.1023 1.0353 30 1 1.1366 -1.1529 3.7441 31 1 -0.0173 -0.1730 2.8077 32 1 0.9015 0.5663 4.1409 33 1 3.4008 0.7034 3.9621 34 1 3.5936 -0.9438 3.3160 35 1 7.0382 0.1358 4.0466 36 1 1.7339 -2.6624 -0.4107 37 1 2.5552 -3.8230 -2.4207 38 1 3.3142 -2.5229 -4.3695 39 1 2.4221 1.0984 -2.3008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299697181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:42 Heat of formation + Delta-G solvation = 5.311267 kcal Electronic energy + Delta-G solvation = -21627.543993 eV Core-core repulsion = 18344.730054 eV Total energy + Delta-G solvation = -3282.813939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15355 -39.83273 -37.11886 -36.53777 -33.90798 -32.30668 -31.90513 -29.96534 -28.23926 -27.36679 -26.53522 -23.70976 -23.03685 -22.69914 -20.83953 -19.69689 -18.70512 -18.52702 -17.50503 -16.62716 -16.45397 -15.78566 -15.37919 -14.64111 -14.49972 -14.31973 -13.95352 -13.28697 -12.91294 -12.44561 -12.27945 -12.21193 -12.04733 -11.84986 -11.69490 -11.55269 -11.42276 -11.21185 -11.12822 -11.09997 -10.82870 -10.66004 -10.55218 -10.33110 -9.61351 -9.40989 -9.25849 -9.15269 -8.50694 -7.90299 -6.13575 -4.17956 -0.14143 0.87202 1.37621 1.42573 3.23717 3.24213 3.29373 3.32309 4.20045 4.34125 4.38836 4.61857 4.73426 4.88107 4.92873 5.10281 5.23865 5.37889 5.48286 5.54408 5.64745 5.79498 5.86317 5.91941 5.95932 6.10499 6.15194 6.18760 6.29966 6.34155 6.47739 6.49650 6.76920 6.85175 7.31597 7.50177 7.65917 7.82469 7.87433 8.02810 8.23361 8.88420 9.47845 10.96865 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.006103 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.548989 B = 4586.842774 C = 5973.758620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 H 0.058 0.942 4 N -0.676 5.676 5 C 0.085 3.915 6 H 0.044 0.956 7 C -0.133 4.133 8 C 0.012 3.988 9 C -0.528 4.528 10 H 0.050 0.950 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.886 3.114 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.278 1.278 17 C -0.073 4.073 18 C -0.046 4.046 19 C -0.119 4.119 20 C -0.063 4.063 21 C -0.047 4.047 22 N 0.032 4.968 23 O -0.168 6.168 24 O -0.163 6.163 25 C -0.050 4.050 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.355 0.645 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 -5.078 -9.954 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.076 0.924 4 N -0.309 5.309 5 C -0.024 4.024 6 H 0.062 0.938 7 C -0.192 4.192 8 C -0.026 4.026 9 C -0.567 4.567 10 H 0.068 0.932 11 C -0.138 4.138 12 N -0.527 5.527 13 Si 0.713 3.287 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.204 1.204 17 C -0.074 4.074 18 C -0.064 4.064 19 C -0.138 4.138 20 C -0.082 4.082 21 C -0.130 4.130 22 N 0.550 4.450 23 O -0.383 6.383 24 O -0.379 6.379 25 C -0.070 4.070 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.339 -5.740 -9.095 15.628 hybrid contribution 1.909 1.162 -1.134 2.506 sum -9.430 -4.577 -10.229 14.646 Atomic orbital electron populations 1.21845 0.93764 1.02437 1.01190 1.20571 0.95636 0.95847 0.86729 0.92376 1.60851 1.33803 1.33752 1.02533 1.21729 0.97196 0.93124 0.90326 0.93788 1.21829 0.97868 1.01057 0.98401 1.19471 0.89241 0.97854 0.95987 1.21102 0.91805 1.43276 1.00477 0.93213 1.24958 0.98734 0.95110 0.94996 1.69937 1.18850 1.46238 1.17686 0.86761 0.81394 0.79570 0.80946 1.20143 1.21083 1.20363 1.20148 0.98063 0.94003 0.95170 1.21644 0.92731 0.94148 0.97881 1.21241 0.99379 1.00904 0.92271 1.21025 0.96157 0.90702 1.00329 1.21051 1.11527 0.92082 0.88294 1.43653 0.97950 1.01353 1.02031 1.94505 1.48350 1.72764 1.22693 1.94544 1.59034 0.95700 1.88643 1.20973 0.93736 1.02100 0.90160 0.91832 0.93140 0.91938 0.82387 0.92963 0.93864 0.93531 0.95908 0.95819 0.92770 0.82956 0.83600 0.83324 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.24 37.16 0.34 -1.24 16 2 C 0.12 1.72 2.72 -68.86 -0.19 1.53 16 3 H 0.06 0.91 7.29 -51.93 -0.38 0.53 16 4 N -0.68 -11.02 5.52 -100.95 -0.56 -11.58 16 5 C 0.09 1.59 2.53 -67.71 -0.17 1.42 16 6 H 0.04 0.85 7.19 -51.93 -0.37 0.47 16 7 C -0.13 -2.15 9.52 37.16 0.35 -1.79 16 8 C 0.01 0.28 4.37 -27.89 -0.12 0.16 16 9 C -0.53 -13.85 8.27 -34.44 -0.28 -14.13 16 10 H 0.05 1.28 7.74 -52.49 -0.41 0.87 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 C -0.07 -0.95 4.71 -104.62 -0.49 -1.44 16 18 C -0.05 -0.51 9.04 -39.59 -0.36 -0.87 16 19 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 20 C -0.06 -0.71 9.55 -39.59 -0.38 -1.09 16 21 C -0.05 -0.65 6.85 -79.95 -0.55 -1.19 16 22 N 0.03 0.50 4.45 33.96 0.15 0.65 16 23 O -0.17 -2.65 18.45 -29.46 -0.54 -3.19 16 24 O -0.16 -2.72 18.45 -29.46 -0.54 -3.26 16 25 C -0.05 -0.68 9.18 -39.58 -0.36 -1.05 16 26 H 0.06 0.76 7.05 -51.93 -0.37 0.40 16 27 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.36 6.52 6.78 -39.29 -0.27 6.25 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.61 6.97 -51.93 -0.36 0.25 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.15 1.57 7.72 -52.49 -0.41 1.17 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.15 1.43 7.61 -52.48 -0.40 1.03 16 39 H 0.15 2.00 7.59 -52.48 -0.40 1.60 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -29.09 333.67 -8.90 -38.00 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.45 Total: 2.60 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -2.70 Total: -19.59 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.33 Total: -35.85 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -1.09 Total: -6.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.09 -8.90 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299697181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.307 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds