Wall clock time and date at job start Tue Mar 31 2020 00:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46861 * 2 1 4 4 C 1.50702 * 109.46860 * 119.99587 * 2 1 3 5 5 C 1.34517 * 125.79234 * 270.77539 * 4 2 1 6 6 C 1.41379 * 106.83992 * 180.02562 * 5 4 2 7 7 C 1.34512 * 106.84308 * 359.97438 * 6 5 4 8 8 O 1.34305 * 108.42125 * 359.74656 * 7 6 5 9 9 N 1.46491 * 109.47456 * 239.99722 * 2 1 3 10 10 C 1.34781 * 119.99861 * 121.94303 * 9 2 1 11 11 O 1.21585 * 120.00113 * 4.35423 * 10 9 2 12 12 N 1.34782 * 119.99699 * 184.35657 * 10 9 2 13 13 C 1.46500 * 119.99897 * 174.96223 * 12 10 9 14 14 C 1.50692 * 109.47363 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00294 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00277 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47135 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47272 * 119.99604 * 18 16 14 21 21 H 1.48497 * 109.47437 * 239.99756 * 18 16 14 22 22 C 1.46503 * 120.00254 * 301.94238 * 9 2 1 23 23 C 1.52998 * 117.51710 * 356.60764 * 22 9 2 24 24 C 1.53000 * 60.00181 * 107.47849 * 23 22 9 25 25 H 1.09001 * 109.46887 * 67.11043 * 1 2 3 26 26 H 1.09002 * 109.46767 * 187.10091 * 1 2 3 27 27 H 1.08993 * 109.47320 * 307.10409 * 1 2 3 28 28 H 1.07998 * 126.57840 * 0.03207 * 5 4 2 29 29 H 1.08006 * 126.57660 * 179.97438 * 6 5 4 30 30 H 1.07994 * 125.79055 * 180.02562 * 7 6 5 31 31 H 0.96996 * 120.00092 * 354.95945 * 12 10 9 32 32 H 1.09001 * 109.47216 * 299.99991 * 13 12 10 33 33 H 1.09001 * 109.47255 * 59.99469 * 13 12 10 34 34 H 0.96994 * 119.99758 * 180.02562 * 17 16 14 35 35 H 1.09002 * 115.55052 * 210.90917 * 22 9 2 36 36 H 1.08999 * 117.50106 * 214.96765 * 23 22 9 37 37 H 1.08999 * 117.49678 * 359.97438 * 23 22 9 38 38 H 1.08998 * 117.50498 * 252.51186 * 24 23 22 39 39 H 1.09004 * 117.49898 * 107.48231 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.2806 -0.1387 2.4227 6 6 2.7327 -1.1655 3.2830 7 6 2.7331 -2.3032 2.5654 8 8 2.3023 -2.0226 1.3247 9 7 2.0184 -0.6906 -1.1960 10 6 2.8253 -0.0476 -2.0632 11 8 3.2120 1.0779 -1.8138 12 7 3.2036 -0.6522 -3.2069 13 6 3.9888 0.0849 -4.2000 14 6 4.2794 -0.8111 -5.3763 15 1 3.9159 -1.8281 -5.3833 16 6 5.0102 -0.3330 -6.4432 17 7 5.4533 0.9053 -6.4346 18 14 5.3710 -1.4438 -7.9010 19 1 4.7663 -2.7799 -7.6669 20 1 4.7937 -0.8477 -9.1325 21 1 6.8402 -1.5874 -8.0624 22 6 1.6298 -2.0802 -1.4496 23 6 0.7777 -2.7806 -0.3894 24 6 0.1506 -2.3618 -1.7206 25 1 -0.3633 0.3997 -0.9468 26 1 -0.3633 -1.0198 0.1270 27 1 -0.3633 0.6199 0.8195 28 1 2.1580 0.9044 2.6743 29 1 3.0222 -1.0571 4.3179 30 1 3.0255 -3.2779 2.9271 31 1 2.9559 -1.5753 -3.3724 32 1 3.4249 0.9550 -4.5362 33 1 4.9273 0.4113 -3.7518 34 1 5.9671 1.2418 -7.1853 35 1 2.3633 -2.6833 -1.9847 36 1 0.9504 -3.8445 -0.2270 37 1 0.5063 -2.2076 0.4973 38 1 -0.5335 -1.5133 -1.7100 39 1 -0.0891 -3.1502 -2.4342 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331468003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:46 Heat of formation + Delta-G solvation = 15.274301 kcal Electronic energy + Delta-G solvation = -22151.102684 eV Core-core repulsion = 18868.720775 eV Total energy + Delta-G solvation = -3282.381909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.59577 -41.36738 -38.87133 -36.35060 -35.09048 -34.43002 -33.75637 -32.44491 -29.48340 -29.00178 -25.23526 -24.15624 -23.62019 -23.35957 -22.47794 -21.57600 -20.50978 -19.85802 -18.61624 -18.07560 -17.20112 -16.92848 -16.61025 -16.52251 -15.92098 -15.44974 -15.16919 -14.81413 -14.44342 -14.25696 -14.16534 -13.92539 -13.66720 -13.65459 -13.32410 -12.94349 -12.79708 -12.74412 -12.23760 -12.17038 -12.05106 -11.80762 -11.61956 -11.45168 -10.97683 -10.81783 -10.73963 -10.01548 -9.38742 -9.35770 -8.28544 -6.45153 0.80956 1.43048 1.45223 1.54977 1.60155 1.78301 2.01365 2.20781 2.38339 2.98011 3.06558 3.09251 3.63304 3.80466 3.96610 4.00753 4.11572 4.20755 4.22457 4.33887 4.63065 4.66997 4.81648 4.87157 4.93155 5.01027 5.03142 5.07081 5.22994 5.25141 5.26353 5.28139 5.44269 5.48914 5.61764 5.71198 5.83715 6.07250 6.27145 6.65806 7.12512 7.24698 7.62419 8.84195 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.004232 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.524049 B = 6614.141005 C = 6836.516526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.230 3.770 3 H 0.100 0.900 4 C -0.036 4.036 5 C -0.214 4.214 6 C -0.226 4.226 7 C -0.047 4.047 8 O -0.164 6.164 9 N -0.592 5.592 10 C 0.696 3.304 11 O -0.644 6.644 12 N -0.718 5.718 13 C 0.285 3.715 14 C -0.553 4.553 15 H 0.082 0.918 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.987 3.013 19 H -0.253 1.253 20 H -0.277 1.277 21 H -0.279 1.279 22 C 0.042 3.958 23 C -0.152 4.152 24 C -0.190 4.190 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.167 0.833 30 H 0.236 0.764 31 H 0.403 0.597 32 H -0.013 1.013 33 H -0.016 1.016 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 -11.113 17.205 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.126 3.874 3 H 0.118 0.882 4 C -0.087 4.087 5 C -0.234 4.234 6 C -0.245 4.245 7 C -0.114 4.114 8 O -0.060 6.060 9 N -0.327 5.327 10 C 0.398 3.602 11 O -0.527 6.527 12 N -0.371 5.371 13 C 0.162 3.838 14 C -0.591 4.591 15 H 0.100 0.900 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.176 1.176 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.062 4.062 23 C -0.189 4.189 24 C -0.228 4.228 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.185 0.815 30 H 0.252 0.748 31 H 0.239 0.761 32 H 0.005 0.995 33 H 0.002 0.998 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.815 -10.361 17.001 23.151 hybrid contribution 0.695 0.052 -0.625 0.936 sum -11.120 -10.309 16.376 22.319 Atomic orbital electron populations 1.22647 0.91067 1.05196 1.03641 1.19505 0.95689 0.94786 0.77420 0.88202 1.22665 1.06253 0.82384 0.97429 1.21837 1.06627 1.01679 0.93280 1.22097 1.07629 0.92420 1.02357 1.24880 1.02415 1.02040 0.82109 1.84361 1.64520 1.24749 1.32367 1.46605 1.50435 1.12865 1.22784 1.16211 0.79247 0.83923 0.80863 1.90820 1.62458 1.21174 1.78271 1.45393 1.57333 1.16520 1.17904 1.18439 0.88385 0.91514 0.85458 1.21590 1.35659 0.99346 1.02539 0.89990 1.26062 0.94670 0.96783 1.01932 1.70153 1.36655 1.17227 1.32887 0.85084 0.77913 0.78730 0.77304 1.17640 1.20287 1.20460 1.21785 0.95049 0.82371 1.06983 1.23590 1.00464 1.01749 0.93094 1.23781 0.94628 1.04285 1.00131 0.91527 0.88879 0.89203 0.82923 0.81544 0.74832 0.76074 0.99487 0.99846 0.92211 0.86045 0.86313 0.86941 0.88021 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 7.73 71.98 0.56 -2.99 16 2 C 0.23 6.69 3.00 44.25 0.13 6.82 16 3 H 0.10 3.44 6.91 -2.39 -0.02 3.42 16 4 C -0.04 -0.95 5.28 24.83 0.13 -0.82 16 5 C -0.21 -5.12 10.81 22.19 0.24 -4.88 16 6 C -0.23 -4.41 10.91 22.19 0.24 -4.17 16 7 C -0.05 -0.86 12.09 66.97 0.81 -0.05 16 8 O -0.16 -3.88 6.46 -2.54 -0.02 -3.89 16 9 N -0.59 -19.83 2.71 -795.93 -2.16 -21.99 16 10 C 0.70 31.56 8.27 179.05 1.48 33.04 16 11 O -0.64 -35.02 15.69 -3.98 -0.06 -35.08 16 12 N -0.72 -33.25 5.45 -482.30 -2.63 -35.88 16 13 C 0.29 16.40 5.43 85.63 0.47 16.87 16 14 C -0.55 -30.91 9.28 25.60 0.24 -30.67 16 15 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.01 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 18 Si 0.99 42.80 29.54 68.60 2.03 44.83 16 19 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.04 1.09 5.30 44.99 0.24 1.33 16 23 C -0.15 -2.83 7.02 30.59 0.21 -2.61 16 24 C -0.19 -3.70 9.62 30.60 0.29 -3.41 16 25 H 0.07 1.50 7.65 -2.39 -0.02 1.48 16 26 H 0.09 1.69 3.90 -2.39 -0.01 1.68 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.24 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.40 15.90 6.24 -92.71 -0.58 15.32 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.12 3.15 6.89 -2.39 -0.02 3.13 16 36 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 2.16 3.38 -2.39 -0.01 2.15 16 38 H 0.10 2.02 5.88 -2.39 -0.01 2.01 16 39 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -75.77 316.30 3.45 -72.32 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.50 Total: 27.17 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.50 Total: 9.21 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.50 Total: -114.55 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.08 Total: -38.98 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.77 3.45 -72.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331468003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.598 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds