Wall clock time and date at job start Tue Mar 31 2020 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47192 * 2 1 4 4 C 1.50699 * 109.47199 * 240.00046 * 2 1 3 5 5 C 1.34513 * 125.79048 * 83.89744 * 4 2 1 6 6 C 1.41390 * 106.84441 * 180.02562 * 5 4 2 7 7 C 1.34511 * 106.83684 * 359.97438 * 6 5 4 8 8 O 1.34306 * 108.42471 * 0.02562 * 7 6 5 9 9 N 1.46499 * 109.47553 * 120.00141 * 2 1 3 10 10 C 1.34772 * 120.00139 * 240.06202 * 9 2 1 11 11 O 1.21585 * 119.99994 * 5.31662 * 10 9 2 12 12 N 1.34776 * 120.00081 * 185.31727 * 10 9 2 13 13 C 1.46505 * 119.99986 * 185.23702 * 12 10 9 14 14 C 1.50700 * 109.46795 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00398 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99679 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99847 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99817 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47235 * 59.99756 * 18 16 14 20 20 H 1.48504 * 109.47028 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47091 * 299.99188 * 18 16 14 22 22 C 1.46502 * 119.99877 * 60.05874 * 9 2 1 23 23 C 1.53004 * 117.50007 * 2.80720 * 22 9 2 24 24 C 1.53003 * 117.49813 * 294.14979 * 22 9 2 25 25 H 1.09004 * 109.47169 * 181.47589 * 1 2 3 26 26 H 1.09002 * 109.46895 * 301.47489 * 1 2 3 27 27 H 1.09002 * 109.47259 * 61.48027 * 1 2 3 28 28 H 1.08000 * 126.58135 * 359.97438 * 5 4 2 29 29 H 1.07995 * 126.58319 * 179.97438 * 6 5 4 30 30 H 1.08001 * 125.78944 * 180.02562 * 7 6 5 31 31 H 0.96996 * 120.00030 * 5.22951 * 12 10 9 32 32 H 1.09000 * 109.47022 * 299.99332 * 13 12 10 33 33 H 1.08997 * 109.47501 * 60.00036 * 13 12 10 34 34 H 0.97000 * 119.99805 * 180.02562 * 17 16 14 35 35 H 1.08999 * 115.54960 * 148.48499 * 22 9 2 36 36 H 1.09001 * 117.49624 * 0.02562 * 23 22 9 37 37 H 1.09000 * 117.49948 * 145.01916 * 23 22 9 38 38 H 1.09000 * 117.50142 * 214.98242 * 24 22 9 39 39 H 1.08997 * 117.49691 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.1852 -0.1610 -2.4487 6 6 2.6764 -1.1787 -3.2984 7 6 2.7948 -2.2890 -2.5484 8 8 2.4031 -1.9996 -1.2968 9 7 2.0184 -0.6906 1.1961 10 6 2.7922 -0.0353 2.0839 11 8 3.0055 1.1534 1.9434 12 7 3.3296 -0.6976 3.1274 13 6 4.0749 0.0346 4.1544 14 6 4.5679 -0.9307 5.2014 15 1 4.3477 -1.9842 5.1111 16 6 5.2991 -0.4688 6.2752 17 7 5.5668 0.8140 6.3854 18 14 5.9096 -1.6653 7.5734 19 1 6.7990 -2.6717 6.9399 20 1 6.6651 -0.9231 8.6144 21 1 4.7505 -2.3521 8.1977 22 6 1.6656 -2.0936 1.4273 23 6 0.8394 -2.8009 0.3510 24 6 0.1928 -2.4185 1.6847 25 1 -0.3634 -1.0274 0.0265 26 1 -0.3633 0.5366 0.8765 27 1 -0.3634 0.4907 -0.9030 28 1 1.9726 0.8612 -2.7251 29 1 2.9114 -1.0830 -4.3481 30 1 3.1455 -3.2502 -2.8941 31 1 3.2229 -1.6591 3.1985 32 1 4.9258 0.5385 3.6960 33 1 3.4224 0.7735 4.6194 34 1 6.0815 1.1389 7.1406 35 1 2.4116 -2.6846 1.9585 36 1 0.5588 -2.2224 -0.5292 37 1 1.0418 -3.8573 0.1744 38 1 -0.0301 -3.2235 2.3851 39 1 -0.5137 -1.5884 1.6817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331468038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:49 Heat of formation + Delta-G solvation = 37.643631 kcal Electronic energy + Delta-G solvation = -22159.774173 eV Core-core repulsion = 18878.362271 eV Total energy + Delta-G solvation = -3281.411902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.68739 -39.92129 -37.47945 -34.63041 -33.74305 -32.82149 -32.45069 -31.05769 -28.53639 -26.99669 -23.80530 -22.70213 -22.52528 -22.10290 -21.56800 -20.36389 -19.11043 -18.41306 -17.56382 -16.18500 -16.01119 -15.59398 -15.04153 -14.85871 -14.71606 -14.12004 -13.79933 -13.54593 -13.20054 -13.01713 -12.79179 -12.71233 -12.49902 -11.91309 -11.85579 -11.76282 -11.36773 -10.99721 -10.95692 -10.89804 -10.80946 -10.51169 -10.23459 -9.85022 -9.38249 -9.33918 -8.70823 -8.45053 -8.37847 -7.72536 -6.13071 -4.19574 1.73739 2.58932 2.88995 3.11707 3.27463 3.32255 3.34054 3.70802 4.01205 4.32152 4.52059 4.68050 4.86943 4.91461 4.94761 5.03692 5.09234 5.21096 5.23233 5.25386 5.51413 5.65082 5.73479 5.78097 5.81980 5.93287 5.94056 6.10119 6.10603 6.16251 6.45065 6.68666 7.06797 7.21920 7.52030 7.54071 7.59247 7.85569 8.03642 8.76498 8.89901 9.29923 9.48501 10.97185 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.004241 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.231955 B = 6600.658389 C = 6717.765041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.235 3.765 3 H 0.129 0.871 4 C -0.012 4.012 5 C -0.210 4.210 6 C -0.214 4.214 7 C -0.053 4.053 8 O -0.154 6.154 9 N -0.605 5.605 10 C 0.702 3.298 11 O -0.596 6.596 12 N -0.723 5.723 13 C 0.266 3.734 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.083 3.917 23 C -0.176 4.176 24 C -0.204 4.204 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.198 0.802 31 H 0.387 0.613 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.721 -7.945 -16.678 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.130 3.870 3 H 0.146 0.854 4 C -0.063 4.063 5 C -0.230 4.230 6 C -0.234 4.234 7 C -0.121 4.121 8 O -0.049 6.049 9 N -0.341 5.341 10 C 0.403 3.597 11 O -0.475 6.475 12 N -0.375 5.375 13 C 0.145 3.855 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.022 4.022 23 C -0.214 4.214 24 C -0.243 4.243 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.214 0.786 31 H 0.221 0.779 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.416 -7.073 -16.318 20.610 hybrid contribution 0.470 -1.030 0.430 1.211 sum -9.946 -8.103 -15.887 20.420 Atomic orbital electron populations 1.22699 0.93746 1.04152 1.03106 1.19401 0.93802 0.96083 0.77705 0.85369 1.22931 1.03392 0.82554 0.97455 1.21520 1.07664 1.01069 0.92722 1.21764 1.07204 0.93333 1.01066 1.24076 1.04689 1.00779 0.82535 1.84392 1.63477 1.26693 1.30327 1.46658 1.54004 1.10429 1.23008 1.16012 0.78673 0.85021 0.79980 1.90862 1.66172 1.13754 1.76736 1.45805 1.56437 1.10811 1.24481 1.19006 0.90759 0.92007 0.83748 1.21173 1.35454 0.93968 1.07403 0.92061 1.24930 0.95687 0.95360 0.97943 1.69968 1.38593 1.13015 1.30717 0.86478 0.78906 0.80674 0.80854 1.20109 1.21074 1.20082 1.21483 0.93761 0.83462 1.03543 1.23510 1.03303 1.01160 0.93405 1.23733 0.97060 1.03991 0.99551 0.90150 0.90839 0.91235 0.83578 0.83801 0.78550 0.77896 0.95626 0.95747 0.92420 0.85832 0.87223 0.88362 0.88296 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 7.90 37.15 0.29 -1.70 16 2 C 0.24 3.36 3.00 -69.09 -0.21 3.16 16 3 H 0.13 2.06 6.91 -51.93 -0.36 1.70 16 4 C -0.01 -0.15 5.10 -35.63 -0.18 -0.34 16 5 C -0.21 -2.54 10.81 -39.70 -0.43 -2.97 16 6 C -0.21 -2.30 10.91 -39.70 -0.43 -2.73 16 7 C -0.05 -0.55 12.09 29.41 0.36 -0.20 16 8 O -0.15 -1.96 6.50 5.69 0.04 -1.93 16 9 N -0.60 -9.96 2.71 -165.55 -0.45 -10.41 16 10 C 0.70 15.15 8.27 -86.92 -0.72 14.43 16 11 O -0.60 -15.08 15.69 5.29 0.08 -15.00 16 12 N -0.72 -16.12 5.44 -66.41 -0.36 -16.49 16 13 C 0.27 7.24 5.43 -5.19 -0.03 7.22 16 14 C -0.54 -14.92 9.28 -34.44 -0.32 -15.23 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.08 1.12 5.42 -67.93 -0.37 0.75 16 23 C -0.18 -1.90 6.98 -26.69 -0.19 -2.09 16 24 C -0.20 -2.28 9.60 -26.69 -0.26 -2.53 16 25 H 0.08 0.83 3.49 -51.93 -0.18 0.65 16 26 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.39 7.57 6.14 -40.82 -0.25 7.32 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.12 1.66 6.58 -51.93 -0.34 1.31 16 36 H 0.11 1.22 3.65 -51.93 -0.19 1.03 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.15 6.07 -51.93 -0.32 0.83 16 LS Contribution 316.47 15.07 4.77 4.77 Total: -1.00 -33.06 316.47 -7.76 -40.81 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.97 Total: 8.37 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.58 Total: -0.53 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.07 Total: -52.49 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.12 Total: -16.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.06 -7.76 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331468038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.457 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds