Wall clock time and date at job start Tue Mar 31 2020 00:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53115 * 109.46509 * 240.01858 * 2 1 3 5 5 C 1.53437 * 109.72659 * 170.13032 * 4 2 1 6 6 C 1.50598 * 108.31231 * 50.01371 * 5 4 2 7 7 O 1.33187 * 129.60406 * 163.19070 * 6 5 4 8 8 N 1.21425 * 111.57147 * 179.97438 * 7 6 5 9 9 C 1.31496 * 111.52831 * 0.43959 * 8 7 6 10 10 C 1.48327 * 127.16003 * 179.78650 * 9 8 7 11 11 O 1.21490 * 120.00478 * 185.39863 * 10 9 8 12 12 N 1.34784 * 119.99443 * 5.40516 * 10 9 8 13 13 C 1.46496 * 120.00220 * 5.30981 * 12 10 9 14 14 C 1.46498 * 119.99546 * 185.30819 * 12 10 9 15 15 C 1.50699 * 109.47260 * 270.00017 * 14 12 10 16 16 H 1.07997 * 120.00015 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99752 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00200 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46906 * 119.99814 * 19 17 15 22 22 H 1.48501 * 109.47029 * 239.99821 * 19 17 15 23 23 C 1.35378 * 123.76115 * 343.34598 * 6 5 4 24 24 C 1.50065 * 124.94203 * 359.68569 * 23 6 5 25 25 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47248 * 299.98092 * 1 2 3 27 27 H 1.09005 * 109.46702 * 59.97388 * 1 2 3 28 28 H 1.09000 * 109.42380 * 50.05945 * 4 2 1 29 29 H 1.08989 * 109.38795 * 290.18465 * 4 2 1 30 30 H 1.09001 * 109.69400 * 290.30717 * 5 4 2 31 31 H 1.09000 * 109.69337 * 169.72092 * 5 4 2 32 32 H 1.08998 * 109.46912 * 275.28153 * 13 12 10 33 33 H 1.08997 * 109.46915 * 155.28231 * 13 12 10 34 34 H 1.09002 * 109.47345 * 35.28255 * 13 12 10 35 35 H 1.09006 * 109.47580 * 30.00162 * 14 12 10 36 36 H 1.09003 * 109.46768 * 149.99681 * 14 12 10 37 37 H 0.97003 * 119.99690 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.71322 * 103.64074 * 24 23 6 39 39 H 1.09005 * 109.70712 * 224.27240 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2505 5 6 3.5544 -0.5140 -1.3864 6 6 4.1982 -0.8492 -0.0669 7 8 5.4742 -1.1081 0.2137 8 7 5.6335 -1.3390 1.3951 9 6 4.4986 -1.2762 2.0564 10 6 4.2938 -1.5016 3.5081 11 8 3.1700 -1.5068 3.9695 12 7 5.3547 -1.7006 4.3153 13 6 6.7138 -1.5791 3.7822 14 6 5.1486 -2.0383 5.7258 15 6 5.0845 -0.7727 6.5413 16 1 5.1875 0.1873 6.0573 17 6 4.8955 -0.8403 7.9054 18 7 4.7706 -2.0093 8.4948 19 14 4.8154 0.7287 8.9161 20 1 4.9818 1.9025 8.0220 21 1 3.5002 0.8098 9.6007 22 1 5.9012 0.7208 9.9292 23 6 3.5180 -0.9430 1.0998 24 6 2.0415 -0.7236 1.2540 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.5387 -0.3194 -2.1308 29 1 1.8263 -1.7868 -1.1661 30 1 3.7613 0.5250 -1.6427 31 1 3.9466 -1.1698 -2.1637 32 1 7.0108 -2.5232 3.3257 33 1 7.4012 -1.3349 4.5921 34 1 6.7406 -0.7886 3.0322 35 1 4.2139 -2.5885 5.8349 36 1 5.9762 -2.6550 6.0764 37 1 4.6372 -2.0568 9.4544 38 1 1.5359 -1.6837 1.3565 39 1 1.8510 -0.1110 2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335399496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:08 Heat of formation + Delta-G solvation = 17.442400 kcal Electronic energy + Delta-G solvation = -21939.993620 eV Core-core repulsion = 18657.705727 eV Total energy + Delta-G solvation = -3282.287893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.89917 -38.88551 -38.20759 -34.90764 -33.75496 -32.57003 -32.43667 -30.32963 -27.94301 -27.21192 -25.97754 -24.30557 -23.75567 -22.03788 -21.94391 -19.83444 -18.60887 -17.66656 -16.94729 -16.51378 -16.17427 -15.26733 -15.05664 -14.55993 -14.39349 -14.12288 -13.98653 -13.49802 -13.37840 -12.84106 -12.74389 -12.40420 -12.23981 -12.16241 -12.06856 -11.79441 -11.27904 -11.13407 -11.02775 -10.88707 -10.77306 -10.59720 -10.57938 -10.17429 -9.96749 -9.61818 -9.28954 -9.00159 -8.45082 -7.70200 -6.05652 -4.10369 1.37477 1.91221 2.97967 3.29960 3.37051 3.41634 3.67352 3.81868 4.27727 4.42674 4.48622 4.55418 4.60206 4.90898 4.96650 5.11527 5.20196 5.26162 5.28695 5.45560 5.54866 5.57460 5.64894 5.66507 5.75727 5.85243 5.89698 5.95368 6.07940 6.10006 6.23445 6.34683 6.38133 7.00602 7.36387 7.47170 7.89981 8.17391 8.19705 8.32780 8.82049 8.98340 9.54487 11.02593 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.004612 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.459135 B = 6069.750461 C = 6814.901581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.031 4.031 6 C -0.050 4.050 7 O 0.113 5.887 8 N -0.336 5.336 9 C -0.002 4.002 10 C 0.580 3.420 11 O -0.521 6.521 12 N -0.583 5.583 13 C 0.085 3.915 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.152 4.152 24 C -0.039 4.039 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 2.800 -21.412 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.070 4.070 6 C -0.114 4.114 7 O 0.044 5.956 8 N -0.042 5.042 9 C -0.161 4.161 10 C 0.363 3.637 11 O -0.396 6.396 12 N -0.315 5.315 13 C -0.059 4.059 14 C 0.127 3.873 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.157 4.157 24 C -0.076 4.076 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.697 2.424 -20.531 20.849 hybrid contribution -0.504 0.904 0.727 1.265 sum -3.201 3.327 -19.804 20.335 Atomic orbital electron populations 1.21800 0.94390 1.02167 1.01952 1.21319 0.96154 0.99822 0.94126 0.90714 1.21721 0.93024 1.01835 0.98512 1.20195 0.94396 1.02880 0.89482 1.24032 0.83901 1.04730 0.98763 1.84671 1.26785 1.63280 1.20881 1.74757 1.22380 1.17502 0.89550 1.23482 0.89505 1.05083 0.97984 1.16899 0.85606 0.79102 0.82046 1.90753 1.23011 1.51340 1.74499 1.48094 1.04893 1.66138 1.12345 1.21795 0.83951 1.00893 0.99214 1.19411 0.98385 0.96643 0.72878 1.21441 1.50014 0.92842 0.92152 0.92337 1.24931 0.94973 0.96477 0.97663 1.69942 1.49470 1.23457 1.10496 0.86416 0.77698 0.83226 0.79944 1.19801 1.20792 1.20908 1.20660 0.98639 1.05585 0.90799 1.20043 0.87426 1.01757 0.98411 0.92404 0.92163 0.92577 0.90228 0.91040 0.89014 0.89122 0.93415 0.90648 0.91528 0.93685 0.94485 0.92710 0.89837 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.16 37.15 0.34 -0.85 16 2 C -0.10 -0.90 2.71 -90.28 -0.24 -1.15 16 3 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 4 C -0.11 -0.84 5.18 -26.45 -0.14 -0.98 16 5 C -0.03 -0.25 6.31 -27.71 -0.17 -0.42 16 6 C -0.05 -0.63 7.38 -35.38 -0.26 -0.89 16 7 O 0.11 1.64 11.18 19.20 0.21 1.85 16 8 N -0.34 -5.78 9.00 33.29 0.30 -5.48 16 9 C 0.00 -0.04 6.79 -82.82 -0.56 -0.60 16 10 C 0.58 13.42 7.69 -12.11 -0.09 13.33 16 11 O -0.52 -13.51 15.82 5.37 0.09 -13.42 16 12 N -0.58 -13.66 2.86 -183.90 -0.53 -14.19 16 13 C 0.09 1.63 9.35 59.84 0.56 2.19 16 14 C 0.25 6.67 5.10 -5.20 -0.03 6.64 16 15 C -0.53 -15.32 9.39 -34.44 -0.32 -15.65 16 16 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.15 -2.36 6.04 -104.91 -0.63 -3.00 16 24 C -0.04 -0.53 4.95 -27.90 -0.14 -0.67 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 29 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 34 H 0.07 1.21 5.95 -51.93 -0.31 0.90 16 35 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 36 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 1.15 8.12 -51.93 -0.42 0.72 16 39 H 0.09 1.41 7.95 -51.93 -0.41 1.00 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -33.26 323.45 -6.84 -40.10 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -5.71 Total: -4.45 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.79 Total: -0.35 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.51 Total: -45.78 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.30 Total: -11.57 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.26 -6.84 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335399496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.541 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds