Wall clock time and date at job start Tue Mar 31 2020 00:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46316 * 2 1 4 4 C 1.53115 * 109.46509 * 240.01858 * 2 1 3 5 5 C 1.53437 * 109.72659 * 170.13032 * 4 2 1 6 6 C 1.50598 * 108.31231 * 50.01371 * 5 4 2 7 7 O 1.33187 * 129.60406 * 163.19070 * 6 5 4 8 8 N 1.21425 * 111.57147 * 179.97438 * 7 6 5 9 9 C 1.31496 * 111.52831 * 0.43959 * 8 7 6 10 10 C 1.48327 * 127.16003 * 179.78650 * 9 8 7 11 11 O 1.21490 * 120.00478 * 185.39863 * 10 9 8 12 12 N 1.34784 * 119.99443 * 5.40516 * 10 9 8 13 13 C 1.46496 * 120.00220 * 5.30981 * 12 10 9 14 14 C 1.46498 * 119.99546 * 185.30819 * 12 10 9 15 15 C 1.50699 * 109.47260 * 270.00017 * 14 12 10 16 16 H 1.07997 * 120.00015 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99752 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00200 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46906 * 119.99814 * 19 17 15 22 22 H 1.48501 * 109.47029 * 239.99821 * 19 17 15 23 23 C 1.35378 * 123.76115 * 343.34598 * 6 5 4 24 24 C 1.50065 * 124.94203 * 359.68569 * 23 6 5 25 25 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47248 * 299.98092 * 1 2 3 27 27 H 1.09005 * 109.46702 * 59.97388 * 1 2 3 28 28 H 1.09000 * 109.42380 * 50.05945 * 4 2 1 29 29 H 1.08989 * 109.38795 * 290.18465 * 4 2 1 30 30 H 1.09001 * 109.69400 * 290.30717 * 5 4 2 31 31 H 1.09000 * 109.69337 * 169.72092 * 5 4 2 32 32 H 1.08998 * 109.46912 * 275.28153 * 13 12 10 33 33 H 1.08997 * 109.46915 * 155.28231 * 13 12 10 34 34 H 1.09002 * 109.47345 * 35.28255 * 13 12 10 35 35 H 1.09006 * 109.47580 * 30.00162 * 14 12 10 36 36 H 1.09003 * 109.46768 * 149.99681 * 14 12 10 37 37 H 0.97003 * 119.99690 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.71322 * 103.64074 * 24 23 6 39 39 H 1.09005 * 109.70712 * 224.27240 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2505 5 6 3.5544 -0.5140 -1.3864 6 6 4.1982 -0.8492 -0.0669 7 8 5.4742 -1.1081 0.2137 8 7 5.6335 -1.3390 1.3951 9 6 4.4986 -1.2762 2.0564 10 6 4.2938 -1.5016 3.5081 11 8 3.1700 -1.5068 3.9695 12 7 5.3547 -1.7006 4.3153 13 6 6.7138 -1.5791 3.7822 14 6 5.1486 -2.0383 5.7258 15 6 5.0845 -0.7727 6.5413 16 1 5.1875 0.1873 6.0573 17 6 4.8955 -0.8403 7.9054 18 7 4.7706 -2.0093 8.4948 19 14 4.8154 0.7287 8.9161 20 1 4.9818 1.9025 8.0220 21 1 3.5002 0.8098 9.6007 22 1 5.9012 0.7208 9.9292 23 6 3.5180 -0.9430 1.0998 24 6 2.0415 -0.7236 1.2540 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.5387 -0.3194 -2.1308 29 1 1.8263 -1.7868 -1.1661 30 1 3.7613 0.5250 -1.6427 31 1 3.9466 -1.1698 -2.1637 32 1 7.0108 -2.5232 3.3257 33 1 7.4012 -1.3349 4.5921 34 1 6.7406 -0.7886 3.0322 35 1 4.2139 -2.5885 5.8349 36 1 5.9762 -2.6550 6.0764 37 1 4.6372 -2.0568 9.4544 38 1 1.5359 -1.6837 1.3565 39 1 1.8510 -0.1110 2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335399496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:08 Heat of formation + Delta-G solvation = -3.204105 kcal Electronic energy + Delta-G solvation = -21940.888920 eV Core-core repulsion = 18657.705727 eV Total energy + Delta-G solvation = -3283.183193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.18699 -40.70607 -39.08664 -36.83336 -35.22944 -34.54176 -33.37589 -31.34281 -29.97226 -28.27806 -27.62147 -26.11749 -24.62982 -23.75909 -22.98190 -20.97371 -19.97341 -19.00246 -18.71996 -18.28635 -17.68095 -17.17427 -16.39311 -16.07509 -16.01847 -15.20162 -14.87519 -14.72181 -14.42380 -14.30280 -14.22958 -13.94976 -13.70895 -13.65671 -13.24298 -13.03808 -12.96213 -12.65684 -12.51700 -12.31982 -12.12111 -11.86843 -11.80307 -11.60222 -11.45846 -11.22405 -11.09273 -10.70756 -10.10136 -9.64832 -8.29380 -6.44687 0.05896 0.65247 1.33388 1.35578 1.47909 1.84139 2.04162 2.11317 2.35389 2.86225 3.00728 3.47549 3.59608 3.86031 3.95658 4.01678 4.21344 4.22969 4.30352 4.47617 4.53075 4.56195 4.73814 4.78715 4.79089 4.87845 4.91132 4.99013 5.03616 5.07174 5.15002 5.21627 5.34040 5.41256 5.42280 5.53024 5.68330 5.94818 6.41729 6.61635 6.92787 7.09853 7.27169 8.78728 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.004612 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.459135 B = 6069.750461 C = 6814.901581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.030 4.030 6 C -0.018 4.018 7 O 0.136 5.864 8 N -0.344 5.344 9 C -0.038 4.038 10 C 0.573 3.427 11 O -0.564 6.564 12 N -0.594 5.594 13 C 0.089 3.911 14 C 0.261 3.739 15 C -0.547 4.547 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.176 4.176 24 C -0.039 4.039 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.005 0.995 36 H 0.032 0.968 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 4.356 -24.484 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.147 4.147 5 C -0.068 4.068 6 C -0.083 4.083 7 O 0.062 5.938 8 N -0.046 5.046 9 C -0.193 4.193 10 C 0.359 3.641 11 O -0.443 6.443 12 N -0.325 5.325 13 C -0.053 4.053 14 C 0.140 3.860 15 C -0.585 4.585 16 H 0.067 0.933 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.795 3.205 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.182 4.182 24 C -0.077 4.077 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.365 3.966 -23.594 24.042 hybrid contribution -0.598 0.379 1.581 1.733 sum -2.963 4.345 -22.013 22.632 Atomic orbital electron populations 1.21797 0.93491 1.02342 1.02520 1.21315 0.96895 0.99618 0.92982 0.90295 1.21769 0.92959 1.01559 0.98388 1.20626 0.93931 1.05222 0.87009 1.24917 0.82282 1.01239 0.99863 1.84641 1.27858 1.61894 1.19450 1.74700 1.21767 1.17641 0.90504 1.22999 0.91756 1.08481 0.96113 1.17438 0.84807 0.77894 0.83915 1.90704 1.24545 1.53064 1.75952 1.48110 1.06872 1.66324 1.11165 1.21922 0.81667 1.02295 0.99423 1.18934 0.96064 0.95711 0.75276 1.21623 1.51013 0.92873 0.93040 0.93301 1.25854 0.94039 1.00172 0.98714 1.70046 1.49543 1.25668 1.11195 0.85312 0.78261 0.78625 0.78265 1.19529 1.20224 1.19034 1.20925 0.99245 1.06824 0.91158 1.20060 0.86827 1.01137 0.99633 0.92472 0.93640 0.89954 0.86512 0.91410 0.86168 0.85868 0.91586 0.90452 0.90401 0.97664 0.95028 0.92108 0.90989 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.16 71.98 0.66 -1.44 16 2 C -0.09 -1.52 2.71 -10.57 -0.03 -1.55 16 3 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 4 C -0.11 -1.14 5.18 30.78 0.16 -0.98 16 5 C -0.03 -0.32 6.31 29.96 0.19 -0.13 16 6 C -0.02 -0.41 7.38 24.99 0.18 -0.23 16 7 O 0.14 3.59 11.18 78.73 0.88 4.47 16 8 N -0.34 -11.57 9.00 -48.95 -0.44 -12.01 16 9 C -0.04 -1.47 6.79 42.55 0.29 -1.18 16 10 C 0.57 28.16 7.69 86.93 0.67 28.83 16 11 O -0.56 -31.63 15.82 -3.68 -0.06 -31.69 16 12 N -0.59 -29.23 2.86 -854.03 -2.44 -31.67 16 13 C 0.09 3.47 9.35 127.77 1.19 4.66 16 14 C 0.26 15.00 5.10 85.63 0.44 15.44 16 15 C -0.55 -33.14 9.39 25.60 0.24 -32.90 16 16 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 17 C 0.01 0.69 5.46 84.66 0.46 1.15 16 18 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 19 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.18 -5.46 6.04 -20.05 -0.12 -5.58 16 24 C -0.04 -1.09 4.95 29.83 0.15 -0.95 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.12 0.50 8.11 -2.39 -0.02 0.48 16 29 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.93 8.03 -2.39 -0.02 2.91 16 34 H 0.08 2.84 5.95 -2.39 -0.01 2.83 16 35 H 0.01 0.34 7.50 -2.38 -0.02 0.32 16 36 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 39 H 0.05 1.89 7.95 -2.38 -0.02 1.87 16 Total: -1.00 -77.22 323.45 5.78 -71.45 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.04 Total: 2.79 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.48 Total: 5.15 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -2.60 Total: -100.28 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: 0.82 Total: -27.22 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.22 5.78 -71.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335399496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.243 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds