Wall clock time and date at job start Tue Mar 31 2020 00:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46385 * 2 1 4 4 C 1.53113 * 109.46269 * 119.98420 * 2 1 3 5 5 C 1.53420 * 109.72687 * 189.85991 * 4 2 1 6 6 C 1.50607 * 108.31575 * 309.98918 * 5 4 2 7 7 O 1.33187 * 129.60215 * 196.78415 * 6 5 4 8 8 N 1.21432 * 111.56873 * 179.81591 * 7 6 5 9 9 C 1.31495 * 111.52586 * 0.03722 * 8 7 6 10 10 C 1.48331 * 127.15714 * 179.97438 * 9 8 7 11 11 O 1.21489 * 119.99968 * 185.88824 * 10 9 8 12 12 N 1.34775 * 119.99683 * 5.88527 * 10 9 8 13 13 C 1.46498 * 120.00074 * 355.84911 * 12 10 9 14 14 C 1.46501 * 120.00026 * 175.83981 * 12 10 9 15 15 C 1.50699 * 109.46879 * 90.00303 * 14 12 10 16 16 H 1.07997 * 120.00045 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99798 * 179.72840 * 15 14 12 18 18 N 1.31508 * 119.99797 * 180.27252 * 17 15 14 19 19 Si 1.86797 * 120.00123 * 0.27231 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00170 * 19 17 15 21 21 H 1.48496 * 109.47219 * 210.00300 * 19 17 15 22 22 H 1.48504 * 109.47208 * 330.00337 * 19 17 15 23 23 C 1.35378 * 123.76045 * 16.95170 * 6 5 4 24 24 C 1.50060 * 124.93817 * 359.70355 * 23 6 5 25 25 H 1.08996 * 109.46838 * 300.01951 * 1 2 3 26 26 H 1.09008 * 109.46797 * 60.01169 * 1 2 3 27 27 H 1.08991 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.42425 * 69.78318 * 4 2 1 29 29 H 1.09000 * 109.38106 * 309.91506 * 4 2 1 30 30 H 1.09006 * 109.69532 * 190.28734 * 5 4 2 31 31 H 1.09003 * 109.69929 * 69.69921 * 5 4 2 32 32 H 1.09003 * 109.46770 * 275.66054 * 13 12 10 33 33 H 1.08994 * 109.47670 * 35.66153 * 13 12 10 34 34 H 1.09005 * 109.47425 * 155.67095 * 13 12 10 35 35 H 1.09003 * 109.47002 * 330.00102 * 14 12 10 36 36 H 1.09003 * 109.47107 * 210.00521 * 14 12 10 37 37 H 0.97000 * 120.00313 * 179.97438 * 18 17 15 38 38 H 1.08995 * 109.92242 * 256.80858 * 24 23 6 39 39 H 1.08996 * 109.56061 * 136.13620 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7215 1.2504 5 6 3.5543 -0.5144 1.3863 6 6 4.1982 -0.8496 0.0667 7 8 5.4742 -1.1082 -0.2140 8 7 5.6328 -1.3433 -1.3947 9 6 4.4989 -1.2741 -2.0570 10 6 4.2944 -1.4970 -3.5091 11 8 3.2049 -1.2951 -4.0072 12 7 5.3174 -1.9234 -4.2760 13 6 6.6530 -2.0797 -3.6947 14 6 5.0937 -2.2309 -5.6908 15 6 5.3225 -0.9912 -6.5165 16 1 5.6058 -0.0667 -6.0355 17 6 5.1752 -1.0386 -7.8866 18 7 5.3801 0.0419 -8.6076 19 14 4.6846 -2.6375 -8.7185 20 1 3.2042 -2.7162 -8.8057 21 1 5.2640 -2.6826 -10.0850 22 1 5.1954 -3.7849 -7.9261 23 6 3.5189 -0.9375 -1.1010 24 6 2.0416 -0.7236 -1.2541 25 1 -0.3633 0.5141 0.8898 26 1 -0.3633 0.5137 -0.8902 27 1 -0.3634 -1.0276 0.0005 28 1 1.8261 -1.7870 1.1669 29 1 1.5387 -0.3187 2.1304 30 1 3.9465 -1.1703 2.1635 31 1 3.7615 0.5246 1.6427 32 1 7.1687 -1.1194 -3.7058 33 1 6.5632 -2.4320 -2.6672 34 1 7.2211 -2.8038 -4.2788 35 1 4.0693 -2.5763 -5.8300 36 1 5.7863 -3.0111 -6.0069 37 1 5.2768 0.0086 -9.5715 38 1 1.5359 -1.6837 -1.3565 39 1 1.8509 -0.1111 -2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335399497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:11 Heat of formation + Delta-G solvation = 24.135189 kcal Electronic energy + Delta-G solvation = -21961.015554 eV Core-core repulsion = 18679.017882 eV Total energy + Delta-G solvation = -3281.997672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.94000 -39.00996 -38.24240 -35.03805 -33.81232 -32.55471 -32.42621 -30.40485 -28.54853 -27.26736 -26.09398 -24.29624 -23.75680 -21.99058 -21.78962 -19.85785 -18.69777 -17.64856 -17.00051 -16.94456 -16.31918 -15.34065 -15.08999 -14.68687 -14.47632 -14.02828 -13.83173 -13.55111 -13.43131 -12.98983 -12.86837 -12.45507 -12.33896 -12.29967 -12.19935 -11.88039 -11.59899 -11.16952 -11.06572 -10.87661 -10.75486 -10.61151 -10.53280 -10.19131 -9.96462 -9.60266 -9.38359 -9.03813 -8.59612 -7.77011 -6.08916 -4.08166 1.32616 1.86124 2.93596 3.28683 3.34338 3.35860 3.55073 3.73770 4.22182 4.38721 4.44075 4.52350 4.56230 4.87970 4.92912 5.06985 5.17982 5.21909 5.24024 5.40909 5.50021 5.54538 5.61680 5.64121 5.72486 5.78313 5.83244 5.92742 6.07471 6.09638 6.21339 6.31762 6.34789 6.64788 6.85868 7.24874 7.57622 8.05253 8.20811 8.44286 8.78372 8.95066 9.50102 11.04547 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.004604 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.621521 B = 6080.192903 C = 6784.778016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.113 4.113 5 C -0.032 4.032 6 C -0.047 4.047 7 O 0.113 5.887 8 N -0.335 5.335 9 C -0.001 4.001 10 C 0.583 3.417 11 O -0.520 6.520 12 N -0.579 5.579 13 C 0.079 3.921 14 C 0.217 3.783 15 C -0.529 4.529 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.266 1.266 23 C -0.152 4.152 24 C -0.040 4.040 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 -3.015 22.233 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.070 4.070 6 C -0.112 4.112 7 O 0.044 5.956 8 N -0.041 5.041 9 C -0.159 4.159 10 C 0.367 3.633 11 O -0.395 6.395 12 N -0.310 5.310 13 C -0.065 4.065 14 C 0.097 3.903 15 C -0.568 4.568 16 H 0.093 0.907 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.157 4.157 24 C -0.078 4.078 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.476 -3.131 21.328 22.017 hybrid contribution -0.653 -0.526 -0.703 1.094 sum -5.129 -3.657 20.626 21.566 Atomic orbital electron populations 1.21801 0.94382 1.02113 1.02012 1.21322 0.96157 0.99905 0.94055 0.90618 1.21720 0.93018 1.01781 0.98560 1.20207 0.94392 1.02965 0.89449 1.24045 0.83820 1.04545 0.98742 1.84681 1.26753 1.63107 1.21047 1.74730 1.22343 1.17381 0.89689 1.23377 0.89728 1.05132 0.97677 1.16861 0.85061 0.79053 0.82303 1.90753 1.24954 1.51242 1.72530 1.47750 1.08239 1.63328 1.11678 1.21974 0.83898 1.01863 0.98744 1.19791 0.97526 0.97301 0.75732 1.21290 1.47685 0.96264 0.91553 0.90725 1.24847 0.94586 0.96415 0.97072 1.69893 1.49296 1.28000 1.06267 0.86845 0.79554 0.84146 0.79125 1.19807 1.20956 1.19057 1.20646 0.98674 1.05658 0.90699 1.20065 0.87315 1.01729 0.98681 0.92549 0.92128 0.92462 0.91074 0.90199 0.89091 0.88932 0.92733 0.90390 0.91222 0.94393 0.94758 0.92502 0.89984 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.16 37.16 0.34 -0.81 16 2 C -0.10 -0.89 2.71 -90.27 -0.24 -1.13 16 3 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 4 C -0.11 -0.81 5.18 -26.46 -0.14 -0.94 16 5 C -0.03 -0.24 6.31 -27.71 -0.17 -0.42 16 6 C -0.05 -0.58 7.38 -35.37 -0.26 -0.84 16 7 O 0.11 1.60 11.18 19.20 0.21 1.81 16 8 N -0.34 -5.66 8.74 33.29 0.29 -5.37 16 9 C 0.00 -0.02 6.86 -82.82 -0.57 -0.59 16 10 C 0.58 13.20 7.69 -12.11 -0.09 13.10 16 11 O -0.52 -13.14 15.66 5.38 0.08 -13.06 16 12 N -0.58 -13.18 2.86 -183.89 -0.53 -13.71 16 13 C 0.08 1.47 9.74 59.85 0.58 2.05 16 14 C 0.22 5.51 4.24 -5.19 -0.02 5.49 16 15 C -0.53 -15.72 9.94 -34.44 -0.34 -16.07 16 16 H 0.07 2.45 8.06 -52.49 -0.42 2.03 16 17 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 19 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 23 C -0.15 -2.31 6.04 -104.92 -0.63 -2.94 16 24 C -0.04 -0.54 5.01 -27.91 -0.14 -0.68 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 29 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.32 5.31 -51.93 -0.28 1.05 16 34 H 0.07 1.18 7.83 -51.93 -0.41 0.77 16 35 H 0.04 1.00 6.92 -51.93 -0.36 0.64 16 36 H 0.03 0.82 6.91 -51.93 -0.36 0.47 16 37 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 39 H 0.09 1.44 7.75 -51.93 -0.40 1.04 16 LS Contribution 318.75 15.07 4.80 4.80 Total: -1.00 -34.39 318.75 -6.43 -40.82 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.61 Total: -3.40 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.79 Total: -1.69 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.54 Total: -46.38 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.30 Total: -11.25 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.39 -6.43 -40.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335399497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.957 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds