Wall clock time and date at job start Tue Mar 31 2020 00:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46385 * 2 1 4 4 C 1.53113 * 109.46269 * 119.98420 * 2 1 3 5 5 C 1.53420 * 109.72687 * 189.85991 * 4 2 1 6 6 C 1.50607 * 108.31575 * 309.98918 * 5 4 2 7 7 O 1.33187 * 129.60215 * 196.78415 * 6 5 4 8 8 N 1.21432 * 111.56873 * 179.81591 * 7 6 5 9 9 C 1.31495 * 111.52586 * 0.03722 * 8 7 6 10 10 C 1.48331 * 127.15714 * 179.97438 * 9 8 7 11 11 O 1.21489 * 119.99968 * 185.88824 * 10 9 8 12 12 N 1.34775 * 119.99683 * 5.88527 * 10 9 8 13 13 C 1.46498 * 120.00074 * 355.84911 * 12 10 9 14 14 C 1.46501 * 120.00026 * 175.83981 * 12 10 9 15 15 C 1.50699 * 109.46879 * 90.00303 * 14 12 10 16 16 H 1.07997 * 120.00045 * 359.97438 * 15 14 12 17 17 C 1.37880 * 119.99798 * 179.72840 * 15 14 12 18 18 N 1.31508 * 119.99797 * 180.27252 * 17 15 14 19 19 Si 1.86797 * 120.00123 * 0.27231 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00170 * 19 17 15 21 21 H 1.48496 * 109.47219 * 210.00300 * 19 17 15 22 22 H 1.48504 * 109.47208 * 330.00337 * 19 17 15 23 23 C 1.35378 * 123.76045 * 16.95170 * 6 5 4 24 24 C 1.50060 * 124.93817 * 359.70355 * 23 6 5 25 25 H 1.08996 * 109.46838 * 300.01951 * 1 2 3 26 26 H 1.09008 * 109.46797 * 60.01169 * 1 2 3 27 27 H 1.08991 * 109.47434 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.42425 * 69.78318 * 4 2 1 29 29 H 1.09000 * 109.38106 * 309.91506 * 4 2 1 30 30 H 1.09006 * 109.69532 * 190.28734 * 5 4 2 31 31 H 1.09003 * 109.69929 * 69.69921 * 5 4 2 32 32 H 1.09003 * 109.46770 * 275.66054 * 13 12 10 33 33 H 1.08994 * 109.47670 * 35.66153 * 13 12 10 34 34 H 1.09005 * 109.47425 * 155.67095 * 13 12 10 35 35 H 1.09003 * 109.47002 * 330.00102 * 14 12 10 36 36 H 1.09003 * 109.47107 * 210.00521 * 14 12 10 37 37 H 0.97000 * 120.00313 * 179.97438 * 18 17 15 38 38 H 1.08995 * 109.92242 * 256.80858 * 24 23 6 39 39 H 1.08996 * 109.56061 * 136.13620 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7215 1.2504 5 6 3.5543 -0.5144 1.3863 6 6 4.1982 -0.8496 0.0667 7 8 5.4742 -1.1082 -0.2140 8 7 5.6328 -1.3433 -1.3947 9 6 4.4989 -1.2741 -2.0570 10 6 4.2944 -1.4970 -3.5091 11 8 3.2049 -1.2951 -4.0072 12 7 5.3174 -1.9234 -4.2760 13 6 6.6530 -2.0797 -3.6947 14 6 5.0937 -2.2309 -5.6908 15 6 5.3225 -0.9912 -6.5165 16 1 5.6058 -0.0667 -6.0355 17 6 5.1752 -1.0386 -7.8866 18 7 5.3801 0.0419 -8.6076 19 14 4.6846 -2.6375 -8.7185 20 1 3.2042 -2.7162 -8.8057 21 1 5.2640 -2.6826 -10.0850 22 1 5.1954 -3.7849 -7.9261 23 6 3.5189 -0.9375 -1.1010 24 6 2.0416 -0.7236 -1.2541 25 1 -0.3633 0.5141 0.8898 26 1 -0.3633 0.5137 -0.8902 27 1 -0.3634 -1.0276 0.0005 28 1 1.8261 -1.7870 1.1669 29 1 1.5387 -0.3187 2.1304 30 1 3.9465 -1.1703 2.1635 31 1 3.7615 0.5246 1.6427 32 1 7.1687 -1.1194 -3.7058 33 1 6.5632 -2.4320 -2.6672 34 1 7.2211 -2.8038 -4.2788 35 1 4.0693 -2.5763 -5.8300 36 1 5.7863 -3.0111 -6.0069 37 1 5.2768 0.0086 -9.5715 38 1 1.5359 -1.6837 -1.3565 39 1 1.8509 -0.1111 -2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335399497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:10 Heat of formation + Delta-G solvation = 1.507202 kcal Electronic energy + Delta-G solvation = -21961.996777 eV Core-core repulsion = 18679.017882 eV Total energy + Delta-G solvation = -3282.978895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.20030 -40.77402 -39.09487 -36.89087 -35.22917 -34.56334 -33.38622 -31.44325 -30.50767 -28.29713 -27.66555 -25.98797 -24.60319 -23.55572 -23.00065 -20.96711 -20.04459 -19.25655 -18.86711 -18.30674 -17.77123 -17.19423 -16.51532 -16.05090 -15.83510 -15.19181 -15.03957 -14.81797 -14.53616 -14.31439 -14.23093 -14.10330 -13.85644 -13.67944 -13.38183 -13.06505 -12.96214 -12.56689 -12.48797 -12.13129 -12.04505 -11.88084 -11.81876 -11.60382 -11.51549 -11.22067 -11.14002 -10.88419 -10.11549 -9.64656 -8.39534 -6.46898 0.02927 0.63802 1.30147 1.34788 1.43597 1.79691 1.98504 2.10721 2.27147 2.83051 2.94398 3.45240 3.57933 3.84831 3.94360 3.99108 4.18736 4.22319 4.28505 4.45818 4.54359 4.56443 4.64433 4.73782 4.76822 4.78968 4.86352 4.90336 4.98588 5.03317 5.14811 5.20693 5.33179 5.34811 5.41132 5.42051 5.52675 6.13143 6.33176 6.53200 6.88530 7.06168 7.18668 8.77965 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.004604 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.621521 B = 6080.192903 C = 6784.778016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.108 4.108 5 C -0.031 4.031 6 C -0.017 4.017 7 O 0.134 5.866 8 N -0.345 5.345 9 C -0.037 4.037 10 C 0.575 3.425 11 O -0.561 6.561 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.225 3.775 15 C -0.544 4.544 16 H 0.021 0.979 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.953 3.047 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.237 1.237 23 C -0.175 4.175 24 C -0.040 4.040 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 -4.660 25.332 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.069 4.069 6 C -0.082 4.082 7 O 0.061 5.939 8 N -0.048 5.048 9 C -0.193 4.193 10 C 0.362 3.638 11 O -0.439 6.439 12 N -0.321 5.321 13 C -0.062 4.062 14 C 0.104 3.896 15 C -0.582 4.582 16 H 0.039 0.961 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.196 1.196 22 H -0.160 1.160 23 C -0.181 4.181 24 C -0.078 4.078 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.134 0.866 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.653 -4.785 24.432 25.327 hybrid contribution -0.565 0.127 -1.551 1.655 sum -5.218 -4.658 22.881 23.926 Atomic orbital electron populations 1.21794 0.93410 1.02446 1.02458 1.21321 0.96963 0.99536 0.93127 0.90656 1.21762 0.92817 1.01686 0.98308 1.20634 0.94052 1.05130 0.87064 1.24927 0.82206 1.01168 0.99878 1.84647 1.27841 1.61814 1.19639 1.74654 1.21810 1.17699 0.90634 1.22981 0.91864 1.08363 0.96047 1.17426 0.84413 0.77893 0.84103 1.90704 1.26469 1.52824 1.73948 1.47863 1.09907 1.63449 1.10893 1.22123 0.82032 1.01966 1.00045 1.19537 0.97413 0.95720 0.76979 1.21458 1.48149 0.96087 0.92549 0.96078 1.25902 0.94043 1.00959 0.97627 1.70049 1.50405 1.30941 1.06967 0.85639 0.79101 0.79365 0.78398 1.19676 1.19607 1.15970 1.20927 0.99329 1.06808 0.91031 1.20082 0.86709 1.01342 0.99641 0.90070 0.93718 0.92211 0.91083 0.86605 0.85732 0.86435 0.93763 0.88460 0.89198 0.95417 0.92249 0.92000 0.90487 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.16 71.98 0.66 -1.37 16 2 C -0.09 -1.52 2.71 -10.57 -0.03 -1.55 16 3 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 4 C -0.11 -1.08 5.18 30.77 0.16 -0.92 16 5 C -0.03 -0.32 6.31 29.96 0.19 -0.13 16 6 C -0.02 -0.38 7.38 25.00 0.18 -0.19 16 7 O 0.13 3.50 11.18 78.72 0.88 4.38 16 8 N -0.34 -11.48 8.74 -48.94 -0.43 -11.90 16 9 C -0.04 -1.41 6.86 42.55 0.29 -1.12 16 10 C 0.58 27.40 7.69 86.93 0.67 28.07 16 11 O -0.56 -30.36 15.66 -3.68 -0.06 -30.42 16 12 N -0.59 -27.77 2.86 -854.02 -2.44 -30.21 16 13 C 0.08 3.02 9.74 127.77 1.24 4.27 16 14 C 0.22 11.66 4.24 85.63 0.36 12.03 16 15 C -0.54 -33.78 9.94 25.60 0.25 -33.52 16 16 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 17 C 0.01 0.79 5.47 84.66 0.46 1.25 16 18 N -0.94 -61.24 13.96 21.45 0.30 -60.95 16 19 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 23 C -0.18 -5.33 6.04 -20.05 -0.12 -5.45 16 24 C -0.04 -1.09 5.01 29.83 0.15 -0.95 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.76 8.12 -2.38 -0.02 0.74 16 29 H 0.12 0.46 8.11 -2.39 -0.02 0.44 16 30 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 3.26 5.31 -2.39 -0.01 3.25 16 34 H 0.09 2.95 7.83 -2.38 -0.02 2.93 16 35 H 0.03 1.49 6.92 -2.39 -0.02 1.48 16 36 H 0.06 2.77 6.91 -2.39 -0.02 2.76 16 37 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 38 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 39 H 0.05 1.88 7.75 -2.39 -0.02 1.86 16 Total: -1.00 -81.22 318.75 5.61 -75.61 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.99 Total: 6.08 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.48 Total: 0.42 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -2.57 Total: -103.06 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: 0.82 Total: -26.04 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -81.22 5.61 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335399497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.120 kcal (2) G-P(sol) polarization free energy of solvation -81.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds