Wall clock time and date at job start Tue Mar 31 2020 00:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46696 * 2 1 4 4 C 1.50694 * 109.47736 * 239.99826 * 2 1 3 5 5 H 1.08000 * 120.00226 * 245.41793 * 4 2 1 6 6 C 1.37878 * 120.00073 * 65.13690 * 4 2 1 7 7 N 1.31511 * 119.99813 * 355.41100 * 6 4 2 8 8 Si 1.86798 * 120.00148 * 175.41269 * 6 4 2 9 9 H 1.48500 * 109.47337 * 94.99856 * 8 6 4 10 10 H 1.48502 * 109.47348 * 215.00316 * 8 6 4 11 11 H 1.48504 * 109.46920 * 334.99739 * 8 6 4 12 12 N 1.46501 * 109.47295 * 119.99175 * 2 1 3 13 13 C 1.34776 * 120.00417 * 275.00957 * 12 2 1 14 14 O 1.21501 * 119.99917 * 359.97438 * 13 12 2 15 15 C 1.48330 * 120.00100 * 179.97438 * 13 12 2 16 16 N 1.31489 * 127.15329 * 0.02562 * 15 13 12 17 17 O 1.21432 * 111.52597 * 179.97438 * 16 15 13 18 18 C 1.33187 * 111.56991 * 0.03772 * 17 16 15 19 19 C 1.35386 * 106.63386 * 359.66860 * 18 17 16 20 20 C 1.50059 * 124.93338 * 179.83821 * 19 18 17 21 21 C 1.53545 * 108.17546 * 16.57580 * 20 19 18 22 22 H 1.09000 * 109.46258 * 70.59984 * 21 20 19 23 23 C 1.53002 * 109.45701 * 190.57640 * 21 20 19 24 24 C 1.53105 * 109.50583 * 310.58574 * 21 20 19 25 25 C 1.50602 * 129.60365 * 179.81098 * 18 17 16 26 26 H 1.09005 * 109.46927 * 174.95075 * 1 2 3 27 27 H 1.09000 * 109.47719 * 294.95298 * 1 2 3 28 28 H 1.09002 * 109.47157 * 54.95069 * 1 2 3 29 29 H 0.97001 * 120.00076 * 179.97438 * 7 6 4 30 30 H 0.97003 * 119.99783 * 94.99791 * 12 2 1 31 31 H 1.09004 * 109.92180 * 256.79633 * 20 19 18 32 32 H 1.09005 * 109.55458 * 136.14180 * 20 19 18 33 33 H 1.09002 * 109.46970 * 180.02562 * 23 21 20 34 34 H 1.08999 * 109.47394 * 300.03158 * 23 21 20 35 35 H 1.09000 * 109.47407 * 60.03762 * 23 21 20 36 36 H 1.09003 * 109.42901 * 309.77584 * 24 21 20 37 37 H 1.09006 * 109.38159 * 189.90823 * 24 21 20 38 38 H 1.08990 * 109.69641 * 316.48899 * 25 18 17 39 39 H 1.09004 * 109.69351 * 77.08211 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5793 -1.6367 -1.1336 6 6 1.7890 -0.1809 -2.4799 7 7 1.0421 0.8944 -2.6042 8 14 2.5200 -0.9908 -3.9961 9 1 1.5264 -1.9228 -4.5872 10 1 2.8743 0.0520 -4.9923 11 1 3.7406 -1.7455 -3.6143 12 7 2.0183 -0.6904 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8582 1.1609 2.4116 15 6 2.6409 -0.7173 3.5685 16 7 2.9918 -1.9805 3.6686 17 8 3.3547 -2.2543 4.7946 18 6 3.2909 -1.1958 5.6005 19 6 2.8380 -0.1640 4.8501 20 6 2.6087 1.2302 5.3552 21 6 3.3486 1.3831 6.6919 22 1 4.4236 1.3978 6.5123 23 6 2.9257 2.6921 7.3617 24 6 3.0000 0.2059 7.6067 25 6 3.6362 -1.0796 7.0618 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3634 0.4335 0.9317 28 1 -0.3633 0.5902 -0.8413 29 1 0.8711 1.2672 -3.4833 30 1 2.2490 -1.6316 1.1528 31 1 1.5424 1.4009 5.5035 32 1 2.9996 1.9484 4.6343 33 1 3.4512 2.8010 8.3105 34 1 3.1738 3.5302 6.7105 35 1 1.8508 2.6775 7.5416 36 1 1.9174 0.0860 7.6467 37 1 3.3804 0.4019 8.6093 38 1 3.2436 -1.9411 7.6017 39 1 4.7187 -1.0328 7.1809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336410563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:23 Heat of formation + Delta-G solvation = -0.278528 kcal Electronic energy + Delta-G solvation = -21651.403909 eV Core-core repulsion = 18368.347579 eV Total energy + Delta-G solvation = -3283.056330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.93995 -38.87218 -38.22242 -34.87703 -33.74643 -32.54815 -32.33709 -30.39937 -28.96223 -27.22963 -25.27767 -24.38105 -23.67190 -21.99271 -20.99936 -19.94249 -19.12598 -17.80516 -17.56406 -16.60074 -15.78959 -15.24885 -15.10649 -14.56615 -14.28651 -14.12080 -13.94704 -13.56735 -13.41729 -12.99200 -12.82050 -12.45463 -12.26697 -11.93906 -11.73150 -11.37004 -11.13324 -11.11646 -10.97561 -10.85282 -10.82266 -10.62897 -10.35894 -10.28173 -10.00485 -9.40021 -9.04933 -9.04226 -8.62524 -7.98650 -6.14544 -4.22519 1.33868 1.86650 2.94367 3.24956 3.31838 3.35375 3.73084 3.78081 4.24698 4.34706 4.47127 4.52338 4.64927 4.87429 4.96217 5.15671 5.17494 5.19101 5.24247 5.46011 5.52588 5.58277 5.62993 5.69227 5.75621 5.84569 5.91771 6.06131 6.19864 6.30944 6.78871 6.89908 7.09548 7.34570 7.49408 7.67345 7.83739 8.06964 8.16326 8.58943 8.73022 8.97895 9.44228 10.92678 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030521 B = 0.003935 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.170523 B = 7114.511098 C = 7673.980971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.263 3.737 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.688 5.688 13 C 0.581 3.419 14 O -0.535 6.535 15 C -0.006 4.006 16 N -0.339 5.339 17 O 0.120 5.880 18 C -0.050 4.050 19 C -0.152 4.152 20 C -0.039 4.039 21 C -0.096 4.096 22 H 0.075 0.925 23 C -0.146 4.146 24 C -0.114 4.114 25 C -0.032 4.032 26 H 0.030 0.970 27 H 0.015 0.985 28 H 0.086 0.914 29 H 0.265 0.735 30 H 0.395 0.605 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -1.726 21.008 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.336 5.336 13 C 0.363 3.637 14 O -0.412 6.412 15 C -0.165 4.165 16 N -0.043 5.043 17 O 0.049 5.951 18 C -0.115 4.115 19 C -0.157 4.157 20 C -0.076 4.076 21 C -0.115 4.115 22 H 0.093 0.907 23 C -0.203 4.203 24 C -0.151 4.151 25 C -0.070 4.070 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.228 0.772 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.219 -1.724 19.923 20.437 hybrid contribution 0.353 -0.338 -0.704 0.857 sum 4.572 -2.061 19.218 19.862 Atomic orbital electron populations 1.22068 0.98179 0.99928 1.00000 1.18882 0.91157 0.94162 0.79608 0.92813 1.21189 1.36712 1.09173 0.90336 0.91953 1.24878 0.94696 0.94995 0.99010 1.69929 1.36437 1.21542 1.24075 0.86415 0.79479 0.78991 0.82142 1.20569 1.20950 1.19746 1.46514 1.63249 1.13979 1.09859 1.16944 0.79121 0.86111 0.81527 1.90737 1.51473 1.14690 1.84286 1.23503 1.04718 0.90776 0.97469 1.74568 1.14550 1.16546 0.98634 1.84666 1.61646 1.34512 1.14298 1.24072 1.04575 0.86320 0.96504 1.20668 1.04890 0.98722 0.91434 1.20046 1.01354 0.90441 0.95773 1.21323 1.00620 0.95004 0.94510 0.90675 1.21801 1.01588 0.96652 1.00267 1.21723 1.01540 0.92810 0.99035 1.20200 1.02106 0.99824 0.84832 0.95109 0.96583 0.89547 0.92534 0.77179 0.89868 0.89114 0.92551 0.92175 0.92410 0.91022 0.90190 0.89064 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.25 37.16 0.34 -3.30 16 2 C 0.26 6.94 2.51 -69.09 -0.17 6.77 16 3 H 0.05 1.60 7.58 -51.93 -0.39 1.20 16 4 C -0.54 -14.68 8.67 -34.44 -0.30 -14.98 16 5 H 0.06 1.66 7.72 -52.49 -0.41 1.25 16 6 C 0.07 1.86 5.36 -17.82 -0.10 1.76 16 7 N -0.88 -25.15 11.58 55.43 0.64 -24.51 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.69 -15.84 5.07 -55.73 -0.28 -16.13 16 13 C 0.58 12.87 7.81 -12.11 -0.09 12.78 16 14 O -0.54 -13.04 15.75 5.36 0.08 -12.96 16 15 C -0.01 -0.11 7.18 -82.83 -0.60 -0.70 16 16 N -0.34 -5.92 11.89 33.29 0.40 -5.53 16 17 O 0.12 1.75 11.18 19.20 0.21 1.97 16 18 C -0.05 -0.63 7.38 -35.37 -0.26 -0.89 16 19 C -0.15 -2.30 6.04 -104.91 -0.63 -2.94 16 20 C -0.04 -0.50 4.97 -27.91 -0.14 -0.64 16 21 C -0.10 -0.86 2.70 -90.28 -0.24 -1.10 16 22 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 23 C -0.15 -1.11 9.16 37.16 0.34 -0.77 16 24 C -0.11 -0.81 5.18 -26.45 -0.14 -0.94 16 25 C -0.03 -0.24 6.31 -27.71 -0.17 -0.41 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.35 6.45 -51.93 -0.33 2.01 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.40 8.46 8.30 -40.82 -0.34 8.12 16 31 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.08 0.40 8.11 -51.93 -0.42 -0.03 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -30.99 324.52 -6.90 -37.89 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.66 Total: 3.70 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.16 Total: -5.37 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.76 Total: -46.16 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.30 Total: -10.99 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.99 -6.90 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336410563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.611 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds